Rmu_ssc0000007.1_g000036

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000007.1
OG0001050
Physical Location & Seq
Reverse (-)
163181 .. 164704
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000007.1_g000036.1.cds

Sequence Viewer

Length: 1071 bp
atggcttcgatgccattgaatttcactaacctcctcaacaacgaatcagccctcagtgacctcaatgaaccacacgatttcccagcgagtcagcatcagtccaatggttctgcttatgctcattcaccatatgaagattgcacttatgaagagactcctacaaatgaagtttacacatacgaagagacaccacgtgcacctagcagcaagaaagcacaaagacaagcccaaagacaagccaacttcacaatcgaagaagacaaacttcttgtatctgcatggctcaatattggcttagacccggtgaaaggagctgatcaaaagaagaaacaattctggaaaaggattactgattactttgaaaaacacaagaagtggtctgctgaaaggagtgaaaaatcattaacaaaccgttggtcaacaattagcagcacagtgagtaagttttgtggacattatgctcaaattcaacacttacggcaaagtggttatacggaacaagataagatagtggaagcaaaagagaatttcaagcaagagggaggtcatgcatttgtacttgaccattgttgggttattttgaggtttcagcaaaaatggatggatgaacatcaaaaaattgaaagtaagagaaagttgaaggctccttctagtaaagctgcagattctatcaatttagatgacgatgatacggaagctcctgaacctgcaagcttgaagaggccaattgggagaaaggctgcaaaggaagctatcaaaaaggcaaaatccaaagaacaagttggtgaaagtgagaatgaatcttcaaaaatccattctgagttggaagagttgagggcaaggagattagaaagtgaccgcataaaggcagaacagtttaagttgctacttgctactgagcaaaagcaagttgctctaagagaaaaggaaattgaacttcaggctcgaagtgaggatgctaaaataatgtctatggatactagtgtcatgcctccatttcaagcagagtactttatcagtcttcagaaggaaatcttggcaaaaagagctagcaggaatgaaaatcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

356

Amino Acids

40.99

Weight (kDa)

6.82

Isoelectric Point (pI)

62.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 715
AciI CCGC 1 cut(s) 859
AcsI RAATTY 3 cut(s) 19, 465, 526
AcuI CTGAAG 2 cut(s) 923, 1007
AcvI CACGTG 1 cut(s) 194
AdeI CACNNNGTG 1 cut(s) 194
AfaI GTAC 2 cut(s) 558, 1010
AfiI CCNNNNNNNGG 3 cut(s) 308, 571, 865
AhlI ACTAGT 1 cut(s) 980
AjuI GAANNNNNNNTTGG 2 cut(s) 1019, 1051
AluBI AGCT 6 cut(s) 314, 659, 698, 714, 752, 1049
AluI AGCT 6 cut(s) 314, 659, 698, 714, 752, 1049
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 2 cut(s) 146, 179
Alw44I GTGCAC 1 cut(s) 195
AoxI GGCC 1 cut(s) 722
ApaLI GTGCAC 1 cut(s) 195
ApeKI GCWGC 4 cut(s) 204, 429, 659, 740
ApoI RAATTY 3 cut(s) 19, 465, 526
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
Asp700I GAANNNNTTC 1 cut(s) 332
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 3 cut(s) 117, 316, 797
AsuNHI GCTAGC 1 cut(s) 1049
BaeGI GKGCMC 1 cut(s) 199
BaeI ACNNNNGTAYC 2 cut(s) 969, 1002
BbrPI CACGTG 1 cut(s) 194
BbsI GAAGAC 2 cut(s) 264, 1013
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 4 cut(s) 216, 441, 646, 727
BccI CCATC 1 cut(s) 595
BceAI ACGGC 1 cut(s) 494
BciVI GTATCC 1 cut(s) 970
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 302
BcoDI GTCTC 2 cut(s) 146, 179
BcuI ACTAGT 1 cut(s) 980
BfaI CTAG 4 cut(s) 201, 651, 981, 1050
BfmI CTRYAG 1 cut(s) 660
BfuAI ACCTGC 1 cut(s) 715
BfuI GTATCC 1 cut(s) 970
BisI GCNGC 4 cut(s) 205, 430, 660, 741
BlsI GCNGC 4 cut(s) 206, 431, 661, 742
BmcAI AGTACT 1 cut(s) 1010
Bme1390I CCNGG 1 cut(s) 302
BmiI GGNNCC 1 cut(s) 645
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 2 cut(s) 103, 946
BmtI GCTAGC 1 cut(s) 1053
BpiI GAAGAC 2 cut(s) 264, 1013
BpuMI CCSGG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 194
BsaBI GATNNNNATC 1 cut(s) 609
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bsc4I CCNNNNNNNGG 3 cut(s) 308, 571, 865
Bse8I GATNNNNATC 1 cut(s) 609
BseGI GGATG 3 cut(s) 606, 610, 961
BseJI GATNNNNATC 1 cut(s) 609
BseLI CCNNNNNNNGG 3 cut(s) 308, 571, 865
BseMII CTCAG 3 cut(s) 67, 810, 888
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 4 cut(s) 216, 441, 646, 727
BseYI CCCAGC 1 cut(s) 82
BshFI GGCC 1 cut(s) 724
BsiHKAI GWGCWC 1 cut(s) 199
BsiSI CCGG 1 cut(s) 302
BslI CCNNNNNNNGG 3 cut(s) 308, 571, 865
BsmAI GTCTC 2 cut(s) 146, 179
BsnI GGCC 1 cut(s) 724
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 1 cut(s) 316
BspACI CCGC 1 cut(s) 859
BspANI GGCC 1 cut(s) 724
BspCNI CTCAG 3 cut(s) 66, 811, 889
BspLI GGNNCC 1 cut(s) 645
BspMAI CTGCAG 1 cut(s) 664
BspMI ACCTGC 1 cut(s) 715
BspOI GCTAGC 1 cut(s) 1053
BssMI GATC 1 cut(s) 316
Bst4CI ACNGT 3 cut(s) 413, 436, 876
Bst6I CTCTTC 4 cut(s) 144, 177, 713, 822
BstBAI YACGTR 1 cut(s) 194
BstC8I GCNNGC 2 cut(s) 712, 1051
BstDEI CTNAG 5 cut(s) 53, 295, 819, 897, 917
BstF5I GGATG 3 cut(s) 606, 610, 961
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 2 cut(s) 146, 179
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 2 cut(s) 749, 1046
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 660
BstSLI GKGCMC 1 cut(s) 199
BstV1I GCAGC 4 cut(s) 216, 441, 646, 727
BstV2I GAAGAC 2 cut(s) 264, 1013
BsuI GTATCC 1 cut(s) 970
BsuRI GGCC 1 cut(s) 724
BtsCI GGATG 3 cut(s) 606, 610, 961
BtsIMutI CAGTG 2 cut(s) 61, 441
BveI ACCTGC 1 cut(s) 715
Cac8I GCNNGC 2 cut(s) 712, 1051
Csp6I GTAC 2 cut(s) 557, 1009
CviAII CATG 3 cut(s) 279, 548, 988
CviQI GTAC 2 cut(s) 557, 1009
DdeI CTNAG 5 cut(s) 53, 295, 819, 897, 917
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
DraIII CACNNNGTG 1 cut(s) 194
Eam1104I CTCTTC 4 cut(s) 144, 177, 713, 822
EarI CTCTTC 4 cut(s) 144, 177, 713, 822
Eco57I CTGAAG 2 cut(s) 923, 1007
Eco72I CACGTG 1 cut(s) 194
EcoT22I ATGCAT 1 cut(s) 553
FaeI CATG 3 cut(s) 282, 551, 991
FalI AAGNNNNNCTT 4 cut(s) 249, 281, 1019, 1051
FatI CATG 3 cut(s) 278, 547, 987
FauNDI CATATG 1 cut(s) 130
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 4 cut(s) 205, 430, 660, 741
FokI GGATG 3 cut(s) 613, 617, 968
Fsp4HI GCNGC 4 cut(s) 205, 430, 660, 741
FspBI CTAG 4 cut(s) 201, 651, 981, 1050
GluI GCNGC 4 cut(s) 205, 430, 660, 741
GsaI CCCAGC 1 cut(s) 86
HaeIII GGCC 1 cut(s) 724
HapII CCGG 1 cut(s) 302
Hin1II CATG 3 cut(s) 282, 551, 991
HincII GTYRAC 1 cut(s) 420
HindII GTYRAC 1 cut(s) 420
HindIII AAGCTT 1 cut(s) 712
HinfI GANTC 5 cut(s) 44, 88, 154, 665, 800
HpaII CCGG 1 cut(s) 302
HphI GGTGA 3 cut(s) 117, 316, 797
Hpy166II GTNNAC 4 cut(s) 172, 197, 420, 452
Hpy188I TCNGA 2 cut(s) 820, 1026
Hpy188III TCNNGA 2 cut(s) 337, 701
Hpy8I GTNNAC 4 cut(s) 172, 197, 420, 452
HpyAV CCTTC 3 cut(s) 634, 657, 1021
HpyCH4III ACNGT 3 cut(s) 413, 436, 876
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 7 cut(s) 141, 197, 278, 551, 662, 710, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 749, 1046
HpyF3I CTNAG 5 cut(s) 53, 295, 819, 897, 917
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 3 cut(s) 282, 551, 991
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 3 cut(s) 311, 649, 703
LpnPI CCDG 7 cut(s) 96, 315, 322, 714, 720, 926, 1039
Lsp1109I GCAGC 4 cut(s) 216, 441, 646, 727
LweI GCATC 2 cut(s) 103, 946
MaeI CTAG 4 cut(s) 201, 651, 981, 1050
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 2 cut(s) 56, 854
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MfeI CAATTG 1 cut(s) 726
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 9 cut(s) 19, 332, 423, 465, 526, 618, 673, 726, 930
MlyI GAGTC 2 cut(s) 97, 148
MmeI TCCRAC 1 cut(s) 804
Mph1103I ATGCAT 1 cut(s) 553
MroXI GAANNNNTTC 1 cut(s) 332
MseI TTAA 2 cut(s) 404, 879
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 302
MunI CAATTG 1 cut(s) 726
MwoI GCNNNNNNNGC 2 cut(s) 749, 1046
NciI CCSGG 1 cut(s) 302
NdeI CATATG 1 cut(s) 130
NdeII GATC 1 cut(s) 316
NheI GCTAGC 1 cut(s) 1049
NlaIII CATG 3 cut(s) 282, 551, 991
NlaIV GGNNCC 1 cut(s) 645
NmuCI GTSAC 2 cut(s) 56, 854
NsiI ATGCAT 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 332
PfeI GAWTC 3 cut(s) 44, 665, 800
PkrI GCNGC 4 cut(s) 206, 431, 661, 742
PleI GAGTC 2 cut(s) 96, 148
PmaCI CACGTG 1 cut(s) 194
PmlI CACGTG 1 cut(s) 194
PpsI GAGTC 2 cut(s) 96, 148
Ppu21I YACGTR 1 cut(s) 194
PspCI CACGTG 1 cut(s) 194
PspFI CCCAGC 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 645
PstI CTGCAG 1 cut(s) 664
RsaI GTAC 2 cut(s) 558, 1010
RsaNI GTAC 2 cut(s) 557, 1009
SaqAI TTAA 2 cut(s) 404, 879
SatI GCNGC 4 cut(s) 205, 430, 660, 741
Sau3AI GATC 1 cut(s) 316
ScaI AGTACT 1 cut(s) 1010
SchI GAGTC 2 cut(s) 97, 148
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 1 cut(s) 199
SfaNI GCATC 2 cut(s) 103, 946
SfcI CTRYAG 1 cut(s) 660
SpeI ACTAGT 1 cut(s) 980
Sse9I AATT 9 cut(s) 19, 332, 423, 465, 526, 618, 673, 726, 930
SsiI CCGC 1 cut(s) 859
SspI AATATT 1 cut(s) 289
SspMI CTAG 4 cut(s) 201, 651, 981, 1050
StyD4I CCNGG 1 cut(s) 300
TaaI ACNGT 3 cut(s) 413, 436, 876
TaiI ACGT 1 cut(s) 196
TaqI TCGA 3 cut(s) 8, 252, 946
TasI AATT 9 cut(s) 19, 332, 423, 465, 526, 618, 673, 726, 930
TatI WGTACW 2 cut(s) 556, 1008
TfiI GAWTC 3 cut(s) 44, 665, 800
Tru1I TTAA 2 cut(s) 404, 879
Tru9I TTAA 2 cut(s) 404, 879
TscAI CASTG 2 cut(s) 61, 441
TseFI GTSAC 2 cut(s) 56, 854
TseI GCWGC 4 cut(s) 204, 429, 659, 740
Tsp45I GTSAC 2 cut(s) 56, 854
TspDTI ATGAA 6 cut(s) 81, 147, 162, 180, 621, 813
TspGWI ACGGA 2 cut(s) 509, 707
TspRI CASTG 2 cut(s) 61, 441
VneI GTGCAC 1 cut(s) 195
XapI RAATTY 3 cut(s) 19, 465, 526
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 4 cut(s) 201, 651, 981, 1050
ZrmI AGTACT 1 cut(s) 1010
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.