Rh3DG294400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001050
Physical Location & Seq
Forward (+)
30584194 .. 30586368
2175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG294400.1

Sequence Viewer

Length: 267 bp
ATGTTTCACGTGATCTCCTCTCCCAACGACTCAACGGCGTCACCGATGGCTTCAATGCCATTGAATTTCACTAACCTCCTTAACAACGAATCAGTCCTCAATGACCTTAATGAACCACACGATTTCCCGACGAGTCAATATCAGTGCAATGGTTCTACTTATGCTCATTCACCATATGAAGATTTCATTTATGAAGAGACTCCTACAAATGAAGTTTACAATTACGAAGAGATACCACGTGCACCTAGCAGCACAAAGACAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.94

Weight (kDa)

4.19

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 64
AcvI CACGTG 2 cut(s) 10, 239
AcyI GRCGYC 1 cut(s) 38
AgsI TTSAA 2 cut(s) 54, 64
AluBI AGCT 1 cut(s) 264
AluI AGCT 1 cut(s) 264
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 191
Alw44I GTGCAC 1 cut(s) 240
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 249
ApoI RAATTY 1 cut(s) 64
AsuHPI GGTGA 2 cut(s) 33, 162
BaeGI GKGCMC 1 cut(s) 244
BbrPI CACGTG 2 cut(s) 10, 239
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 261
BccI CCATC 1 cut(s) 40
BceAI ACGGC 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 246
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
BsaAI YACGTR 2 cut(s) 10, 239
BsaHI GRCGYC 1 cut(s) 38
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bse3DI GCAATG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 154
BseRI GAGGAG 1 cut(s) 7
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 154
BssMI GATC 1 cut(s) 12
BssNI GRCGYC 1 cut(s) 38
Bst6I CTCTTC 2 cut(s) 189, 222
BstACI GRCGYC 1 cut(s) 38
BstBAI YACGTR 2 cut(s) 10, 239
BstKTI GATC 1 cut(s) 15
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 1 cut(s) 12
BstSLI GKGCMC 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 149
CseI GACGC 1 cut(s) 27
CviJI RGCY 2 cut(s) 50, 264
CviKI_1 RGCY 2 cut(s) 50, 264
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 189, 222
EarI CTCTTC 2 cut(s) 189, 222
Eco72I CACGTG 2 cut(s) 10, 239
FaiI YATR 4 cut(s) 162, 175, 177, 192
FauNDI CATATG 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 250
FspBI CTAG 1 cut(s) 246
GluI GCNGC 1 cut(s) 250
HgaI GACGC 1 cut(s) 27
Hin1I GRCGYC 1 cut(s) 38
HinfI GANTC 4 cut(s) 29, 89, 133, 199
HphI GGTGA 2 cut(s) 33, 162
Hpy166II GTNNAC 2 cut(s) 217, 242
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 2 cut(s) 217, 242
Hpy99I CGWCG 1 cut(s) 133
HpyCH4IV ACGT 2 cut(s) 9, 238
HpyCH4V TGCA 2 cut(s) 147, 242
HpySE526I ACGT 2 cut(s) 9, 238
Hsp92I GRCGYC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 12
Lsp1109I GCAGC 1 cut(s) 261
MaeI CTAG 1 cut(s) 246
MaeII ACGT 2 cut(s) 9, 238
MaeIII GTNAC 1 cut(s) 39
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MboII GAAGA 3 cut(s) 191, 206, 239
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 2 cut(s) 64, 220
MlyI GAGTC 3 cut(s) 23, 142, 193
MnlI CCTC 3 cut(s) 28, 86, 107
MseI TTAA 2 cut(s) 81, 108
NdeI CATATG 1 cut(s) 175
NdeII GATC 1 cut(s) 12
NmuCI GTSAC 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 1 cut(s) 251
PleI GAGTC 3 cut(s) 23, 141, 193
PmaCI CACGTG 2 cut(s) 10, 239
PmlI CACGTG 2 cut(s) 10, 239
PpsI GAGTC 3 cut(s) 23, 141, 193
Ppu21I YACGTR 2 cut(s) 10, 239
PspCI CACGTG 2 cut(s) 10, 239
SaqAI TTAA 2 cut(s) 81, 108
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 1 cut(s) 12
SchI GAGTC 3 cut(s) 23, 142, 193
SduI GDGCHC 1 cut(s) 244
SetI ASST 6 cut(s) 12, 78, 108, 241, 247, 266
SgeI CNNG 8 cut(s) 20, 22, 131, 139, 144, 249, 251, 258
Sse9I AATT 2 cut(s) 64, 220
SspMI CTAG 1 cut(s) 246
TaiI ACGT 2 cut(s) 12, 241
TasI AATT 2 cut(s) 64, 220
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 2 cut(s) 81, 108
Tru9I TTAA 2 cut(s) 81, 108
TscAI CASTG 1 cut(s) 149
TseFI GTSAC 1 cut(s) 39
TseI GCWGC 1 cut(s) 249
Tsp45I GTSAC 1 cut(s) 39
TspDTI ATGAA 5 cut(s) 126, 175, 192, 207, 225
TspRI CASTG 1 cut(s) 149
VneI GTGCAC 1 cut(s) 240
XapI RAATTY 1 cut(s) 64
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.