Rh2AG342500

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001050
Physical Location & Seq
Forward (+)
50142755 .. 50146150
3396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG342500.1

Sequence Viewer

Length: 258 bp
ATGATGGCTTCGATGCCATTGAATTTCACTAACCACCTTAACAATGAATCAGCCTTCAATGACCTCAATGAACCACATTTGATATACGATTTCCCAGCGAGTCAGTATCATTCACCCTATGAAGATTGCACTTATGAAGAGACACCTACTAGTGAAGTTTACACTAATGAAGAGACGCCATGTGCACCTAACAGCAAGAAAGCACAAAGACAAGCCAACTTCACAATCGAAGAAGACAAACTTCTTATATCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

85

Amino Acids

9.75

Weight (kDa)

4.35

Isoelectric Point (pI)

53.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 176
AgsI TTSAA 2 cut(s) 22, 58
AhlI ACTAGT 1 cut(s) 149
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 2 cut(s) 134, 167
Alw44I GTGCAC 1 cut(s) 183
ApaLI GTGCAC 1 cut(s) 183
ApoI RAATTY 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 105
BaeGI GKGCMC 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 134, 167
BcuI ACTAGT 1 cut(s) 149
BfaI CTAG 1 cut(s) 150
BmsI GCATC 1 cut(s) 3
BpiI GAAGAC 1 cut(s) 240
BsaHI GRCGYC 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 187
BseYI CCCAGC 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 187
BsmAI GTCTC 2 cut(s) 134, 167
BsmBI CGTCTC 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 187
BssNI GRCGYC 1 cut(s) 176
Bst6I CTCTTC 2 cut(s) 132, 165
BstACI GRCGYC 1 cut(s) 176
BstMAI GTCTC 2 cut(s) 134, 167
BstSLI GKGCMC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 240
CseI GACGC 1 cut(s) 184
CviAII CATG 1 cut(s) 180
CviJI RGCY 3 cut(s) 8, 53, 215
CviKI_1 RGCY 3 cut(s) 8, 53, 215
Eam1104I CTCTTC 2 cut(s) 132, 165
EarI CTCTTC 2 cut(s) 132, 165
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 1 cut(s) 183
FaiI YATR 6 cut(s) 85, 120, 135, 181, 248, 256
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FatI CATG 1 cut(s) 179
FspBI CTAG 1 cut(s) 150
GsaI CCCAGC 1 cut(s) 98
HgaI GACGC 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 176
Hin1II CATG 1 cut(s) 183
HinfI GANTC 2 cut(s) 47, 100
HphI GGTGA 1 cut(s) 105
Hpy166II GTNNAC 2 cut(s) 160, 185
Hpy8I GTNNAC 2 cut(s) 160, 185
HpyAV CCTTC 1 cut(s) 64
HpyCH4V TGCA 3 cut(s) 129, 185, 254
Hsp92I GRCGYC 1 cut(s) 176
Hsp92II CATG 1 cut(s) 183
LpnPI CCDG 1 cut(s) 108
LweI GCATC 1 cut(s) 3
MaeI CTAG 1 cut(s) 150
MboII GAAGA 5 cut(s) 134, 149, 182, 242, 245
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 1 cut(s) 22
MlyI GAGTC 1 cut(s) 109
MnlI CCTC 1 cut(s) 74
MseI TTAA 1 cut(s) 39
NlaIII CATG 1 cut(s) 183
PfeI GAWTC 1 cut(s) 47
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 39
SchI GAGTC 1 cut(s) 109
SduI GDGCHC 1 cut(s) 187
SetI ASST 4 cut(s) 39, 66, 148, 190
SfaNI GCATC 1 cut(s) 3
SgeI CNNG 6 cut(s) 107, 111, 162, 192, 208, 224
SpeI ACTAGT 1 cut(s) 149
Sse9I AATT 1 cut(s) 22
SspMI CTAG 1 cut(s) 150
TaqI TCGA 2 cut(s) 11, 228
TasI AATT 1 cut(s) 22
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TspDTI ATGAA 5 cut(s) 60, 84, 135, 150, 183
VneI GTGCAC 1 cut(s) 183
XapI RAATTY 1 cut(s) 22
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.