Rh1CG094400

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001050
Physical Location & Seq
Reverse (-)
20195745 .. 20198888
3144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG094400.1

Sequence Viewer

Length: 1068 bp
ATGGACTCGACGTCATTGAATTTCACTGACCTCATCAACAGCGAAACAAACCGCAATGAACCTCCTCTGACATATGATTTCCCGTCGAGTCAATATCACACCAATGGTTCTACTTGTGCTCCTACACCATTAGAAGATTGCACTTATGAAGAGACACTTACTAATGAAGATTGCACTAATAAAGAGACAACTTTTGCACCTGGCAGCAAGAAAGCACAAAGACAAGCTAACTTCACGGTCGAAGAAGACAAACTTCTTATATCTGCATGGCTCAATGTTAGCATAGATCAAGTGAAAGGAGCTGATCAAAAGAAAAAACAATTTTGGAAAAGAATTACCAAATACTTTGAAGATAACAAGAAGTGGTCTGGTGAACGGAGTGAAAAGTCATTAACGAACCGTTGGTCAAAAATCAATACCACTGTGAGTAAGTTTTATGGGCATCATTCTCAAATTGAACACTTACAGAAAAGTGATTACACGGAACAAGATAAGATAGTGGAGGCAAAAGAGATGTTCAAGAAAAAGGAAGGTCATACATTTGTACTTGACCATTGTTGGGCTATTATGAGGTTCCAGCAAAAATGGATGGATGAACATCAAAAAATCAATGCCAAGAGAAAGTTCAAGGCTCCTGATTCAATCAATTTAGAAGATGATGATGTAGAAGGTCCTGAACCTGCACCCTTGAAGAGGCCAATTGGGAGAAAGGCTGCAAAGGAAGTGCTCAAAAAGGCAAAATCCAAAGAACAGGTTAGTAAAAATGAGACACCTTCGGAAAGTACTTCTGAGTTGGAAGAGTTTATGGCAAAAAAATTAGAAAGTGAACGCATAAGGGCGGAACAATTTAAGTTGCTACTTGCTACTGAGCAAAAGCAAGTTGCTCTTAGAGAAAAGGAAATTGAAATTCAGCTTCGAAGTGAGGATGCTAAAATAATGGCCATGGATACTAGTGTCATGCCTCCAATTCAAGCAGAATATTTTATCGGTCTTCAGAAGGAAATCTCGGCAAAAAGAGCTAGCGGCGGTGGAAATCAAGTGTTTCTTTCTGAATGTACAATAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

355

Amino Acids

40.93

Weight (kDa)

6.7

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 180 - 335 1.6e-14 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 688
AciI CCGC 4 cut(s) 52, 839, 1023, 1026
AcoI YGGCCR 1 cut(s) 939
AcsI RAATTY 2 cut(s) 19, 906
AcuI CTGAAG 1 cut(s) 977
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 3 cut(s) 546, 784, 1057
AfiI CCNNNNNNNGG 2 cut(s) 559, 693
AgsI TTSAA 9 cut(s) 19, 350, 458, 520, 628, 642, 691, 905, 971
AhdI GACNNNNNGTC 1 cut(s) 10
AhlI ACTAGT 1 cut(s) 950
AjnI CCWGG 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 608, 640
AluBI AGCT 4 cut(s) 227, 302, 913, 1019
AluI AGCT 4 cut(s) 227, 302, 913, 1019
Alw21I GWGCWC 2 cut(s) 121, 729
Alw26I GTCTC 3 cut(s) 146, 179, 761
AoxI GGCC 2 cut(s) 695, 939
ApeKI GCWGC 2 cut(s) 204, 713
ApoI RAATTY 2 cut(s) 19, 906
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AspS9I GGNCC 1 cut(s) 671
AsuHPI GGTGA 1 cut(s) 383
AsuII TTCGAA 1 cut(s) 916
AsuNHI GCTAGC 1 cut(s) 1019
AvaII GGWCC 1 cut(s) 671
BaeI ACNNNNGTAYC 2 cut(s) 939, 972
BalI TGGCCA 1 cut(s) 941
BbsI GAAGAC 2 cut(s) 252, 983
Bbv12I GWGCWC 2 cut(s) 121, 729
BbvI GCAGC 2 cut(s) 216, 700
BccI CCATC 1 cut(s) 583
BciT130I CCWGG 1 cut(s) 201
BciVI GTATCC 1 cut(s) 940
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 3 cut(s) 146, 179, 761
BcuI ACTAGT 1 cut(s) 950
BfaI CTAG 2 cut(s) 951, 1020
BfuAI ACCTGC 1 cut(s) 688
BfuI GTATCC 1 cut(s) 940
BisI GCNGC 3 cut(s) 205, 714, 1024
BlsI GCNGC 3 cut(s) 206, 715, 1025
BmcAI AGTACT 1 cut(s) 784
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 671
BmeRI GACNNNNNGTC 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 671
BmiI GGNNCC 2 cut(s) 575, 633
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 2 cut(s) 451, 916
BmtI GCTAGC 1 cut(s) 1023
BpiI GAAGAC 2 cut(s) 252, 983
Bpu14I TTCGAA 1 cut(s) 916
BsaBI GATNNNNATC 1 cut(s) 597
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 942
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 2 cut(s) 559, 693
Bse3DI GCAATG 1 cut(s) 61
Bse8I GATNNNNATC 1 cut(s) 597
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 942
BseGI GGATG 3 cut(s) 594, 598, 931
BseJI GATNNNNATC 1 cut(s) 597
BseLI CCNNNNNNNGG 2 cut(s) 559, 693
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 2 cut(s) 780, 858
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 2 cut(s) 216, 700
BsgI GTGCAG 1 cut(s) 666
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 2 cut(s) 697, 941
BsiEI CGRYCG 1 cut(s) 240
BsiHKAI GWGCWC 2 cut(s) 121, 729
BslI CCNNNNNNNGG 2 cut(s) 559, 693
BsmAI GTCTC 3 cut(s) 146, 179, 761
BsnI GGCC 2 cut(s) 697, 941
Bsp119I TTCGAA 1 cut(s) 916
Bsp1286I GDGCHC 2 cut(s) 121, 729
Bsp1407I TGTACA 1 cut(s) 1055
Bsp143I GATC 2 cut(s) 286, 304
Bsp19I CCATGG 1 cut(s) 942
BspACI CCGC 4 cut(s) 52, 839, 1023, 1026
BspANI GGCC 2 cut(s) 697, 941
BspCNI CTCAG 2 cut(s) 781, 859
BspLI GGNNCC 2 cut(s) 575, 633
BspMI ACCTGC 1 cut(s) 688
BspOI GCTAGC 1 cut(s) 1023
BspT104I TTCGAA 1 cut(s) 916
BsrDI GCAATG 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 1055
BssECI CCNNGG 1 cut(s) 942
BssMI GATC 2 cut(s) 286, 304
BssNI GRCGYC 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 942
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 3 cut(s) 238, 401, 424
Bst6I CTCTTC 3 cut(s) 144, 686, 792
BstACI GRCGYC 1 cut(s) 11
BstAUI TGTACA 1 cut(s) 1055
BstBI TTCGAA 1 cut(s) 916
BstC8I GCNNGC 1 cut(s) 1021
BstDEI CTNAG 3 cut(s) 789, 867, 887
BstDSI CCRYGG 1 cut(s) 942
BstENI CCTNNNNNAGG 1 cut(s) 691
BstF5I GGATG 3 cut(s) 594, 598, 931
BstKTI GATC 2 cut(s) 289, 307
BstMAI GTCTC 3 cut(s) 146, 179, 761
BstMBI GATC 2 cut(s) 286, 304
BstMCI CGRYCG 1 cut(s) 240
BstMWI GCNNNNNNNGC 1 cut(s) 1016
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BstV1I GCAGC 2 cut(s) 216, 700
BstV2I GAAGAC 2 cut(s) 252, 983
BsuI GTATCC 1 cut(s) 940
BsuRI GGCC 2 cut(s) 697, 941
BtgI CCRYGG 1 cut(s) 942
BtsCI GGATG 3 cut(s) 594, 598, 931
BtsIMutI CAGTG 2 cut(s) 24, 420
BveI ACCTGC 1 cut(s) 688
Cac8I GCNNGC 1 cut(s) 1021
Cfr13I GGNCC 1 cut(s) 671
Csp6I GTAC 3 cut(s) 545, 783, 1056
CviAII CATG 3 cut(s) 267, 943, 958
CviQI GTAC 3 cut(s) 545, 783, 1056
DdeI CTNAG 3 cut(s) 789, 867, 887
DpnI GATC 2 cut(s) 288, 306
DpnII GATC 2 cut(s) 286, 304
DriI GACNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 939
Eam1104I CTCTTC 3 cut(s) 144, 686, 792
Eam1105I GACNNNNNGTC 1 cut(s) 10
EarI CTCTTC 3 cut(s) 144, 686, 792
EciI GGCGGA 1 cut(s) 854
Eco130I CCWWGG 1 cut(s) 942
Eco47I GGWCC 1 cut(s) 671
Eco57I CTGAAG 1 cut(s) 977
EcoNI CCTNNNNNAGG 1 cut(s) 691
EcoO109I RGGNCCY 1 cut(s) 671
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 942
ErhI CCWWGG 1 cut(s) 942
FaeI CATG 3 cut(s) 270, 946, 961
FalI AAGNNNNNCTT 8 cut(s) 141, 173, 237, 269, 870, 902, 1029, 1061
FatI CATG 3 cut(s) 266, 942, 957
FauNDI CATATG 1 cut(s) 73
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 3 cut(s) 205, 714, 1024
FokI GGATG 3 cut(s) 601, 605, 938
Fsp4HI GCNGC 3 cut(s) 205, 714, 1024
FspBI CTAG 2 cut(s) 951, 1020
GluI GCNGC 3 cut(s) 205, 714, 1024
HaeIII GGCC 2 cut(s) 697, 941
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 3 cut(s) 270, 946, 961
HinfI GANTC 3 cut(s) 5, 88, 638
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 2 cut(s) 374, 827
Hpy188I TCNGA 5 cut(s) 69, 778, 790, 996, 1051
Hpy188III TCNNGA 3 cut(s) 520, 635, 674
Hpy8I GTNNAC 2 cut(s) 374, 827
Hpy99I CGWCG 2 cut(s) 13, 88
HpyAV CCTTC 4 cut(s) 524, 662, 783, 991
HpyCH4III ACNGT 3 cut(s) 238, 401, 424
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 6 cut(s) 141, 174, 197, 266, 683, 716
HpyF10VI GCNNNNNNNGC 1 cut(s) 1016
HpyF3I CTNAG 3 cut(s) 789, 867, 887
HpySE526I ACGT 1 cut(s) 11
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 3 cut(s) 270, 946, 961
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 2 cut(s) 286, 304
LmnI GCTCC 3 cut(s) 124, 299, 637
LpnPI CCDG 8 cut(s) 186, 213, 354, 590, 648, 687, 693, 737
Lsp1109I GCAGC 2 cut(s) 216, 700
LweI GCATC 2 cut(s) 451, 916
MaeI CTAG 2 cut(s) 951, 1020
MaeII ACGT 1 cut(s) 11
MalI GATC 2 cut(s) 288, 306
MboI GATC 2 cut(s) 286, 304
MfeI CAATTG 1 cut(s) 699
MhlI GDGCHC 2 cut(s) 121, 729
MlsI TGGCCA 1 cut(s) 941
MluNI TGGCCA 1 cut(s) 941
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 774
MnlI CCTC 8 cut(s) 41, 72, 75, 496, 564, 687, 916, 972
Mox20I TGGCCA 1 cut(s) 941
MscI TGGCCA 1 cut(s) 941
MseI TTAA 2 cut(s) 392, 849
MslI CAYNNNNRTG 1 cut(s) 102
Msp20I TGGCCA 1 cut(s) 941
MspR9I CCNGG 1 cut(s) 201
MunI CAATTG 1 cut(s) 699
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 1016
NcoI CCATGG 1 cut(s) 942
NdeI CATATG 1 cut(s) 73
NdeII GATC 2 cut(s) 286, 304
NheI GCTAGC 1 cut(s) 1019
NlaIII CATG 3 cut(s) 270, 946, 961
NlaIV GGNNCC 2 cut(s) 575, 633
NmeAIII GCCGAG 1 cut(s) 986
NspV TTCGAA 1 cut(s) 916
PfeI GAWTC 1 cut(s) 638
PkrI GCNGC 3 cut(s) 206, 715, 1025
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PpuMI RGGWCCY 1 cut(s) 671
Psp5II RGGWCCY 1 cut(s) 671
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 2 cut(s) 575, 633
PspPI GGNCC 1 cut(s) 671
PspPPI RGGWCCY 1 cut(s) 671
RsaI GTAC 3 cut(s) 546, 784, 1057
RsaNI GTAC 3 cut(s) 545, 783, 1056
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 2 cut(s) 392, 849
SatI GCNGC 3 cut(s) 205, 714, 1024
Sau3AI GATC 2 cut(s) 286, 304
Sau96I GGNCC 1 cut(s) 671
ScaI AGTACT 1 cut(s) 784
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 201
SduI GDGCHC 2 cut(s) 121, 729
SfaNI GCATC 2 cut(s) 451, 916
SfuI TTCGAA 1 cut(s) 916
SinI GGWCC 1 cut(s) 671
SmiMI CAYNNNNRTG 1 cut(s) 102
SpeI ACTAGT 1 cut(s) 950
SsiI CCGC 4 cut(s) 52, 839, 1023, 1026
SspI AATATT 1 cut(s) 980
SspMI CTAG 2 cut(s) 951, 1020
StyD4I CCNGG 1 cut(s) 199
StyI CCWWGG 1 cut(s) 942
TaaI ACNGT 3 cut(s) 238, 401, 424
TaiI ACGT 1 cut(s) 14
TaqI TCGA 4 cut(s) 8, 86, 240, 916
TaqII GACCGA 1 cut(s) 977
TatI WGTACW 3 cut(s) 544, 782, 1055
TauI GCSGC 1 cut(s) 1026
TfiI GAWTC 1 cut(s) 638
Tru1I TTAA 2 cut(s) 392, 849
Tru9I TTAA 2 cut(s) 392, 849
TscAI CASTG 2 cut(s) 31, 427
TseI GCWGC 2 cut(s) 204, 713
TspDTI ATGAA 4 cut(s) 72, 162, 180, 609
TspGWI ACGGA 2 cut(s) 391, 497
TspRI CASTG 2 cut(s) 31, 427
VpaK11BI GGWCC 1 cut(s) 671
XagI CCTNNNNNAGG 1 cut(s) 691
XapI RAATTY 2 cut(s) 19, 906
XspI CTAG 2 cut(s) 951, 1020
ZraI GACGTC 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.