Rmu_sc0000453.1_g000002

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000453.1
OG0001050
Physical Location & Seq
Forward (+)
2445 .. 2999
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000453.1_g000002.1.cds

Sequence Viewer

Length: 555 bp
atgttcaagacaaaggaaggtcatacatttgtacttgaccattgttgggctattatgaggttccagcaaaaatggatggatgaacatcaaaaaatcaatgtcaagagaaagttcaaggctcctgattcaatcaatttagaagatgatgatgtagaaggtcctgaacctgcacccttgaagaggccaattgagagaaaggctgcaaaggaagtgatcaaaaaggcaaaatccaaagaacaggttagtaaaaatgagtcaccttcgaaaagtgcttctgagttggaagagtttatggcaaaaaaattagaaagtgaacgcataagggcggaacaatttaagttgctactagcaactgagcaaaagcaagttgctcttagagaaaaggaaattgaaattcagcttcgaagtgaggatgctaaaataatggccatggatactagtgtcatgcctccaattcaagcagaatattttatcggtcttcagaaggaaatcttggcaaaaagagctagcggcggtggaaatcaagtgtttctttctgattgtgcaataagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

184

Amino Acids

21.16

Weight (kDa)

8.74

Isoelectric Point (pI)

54.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 175
AciI CCGC 3 cut(s) 326, 510, 513
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 464
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 2 cut(s) 46, 180
AgsI TTSAA 6 cut(s) 7, 115, 129, 178, 392, 458
AhlI ACTAGT 1 cut(s) 437
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AluBI AGCT 2 cut(s) 400, 506
AluI AGCT 2 cut(s) 400, 506
AoxI GGCC 2 cut(s) 182, 426
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 249
AsuII TTCGAA 2 cut(s) 263, 403
AsuNHI GCTAGC 1 cut(s) 506
AvaII GGWCC 1 cut(s) 158
BaeI ACNNNNGTAYC 2 cut(s) 426, 459
BalI TGGCCA 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 470
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 70
BciVI GTATCC 1 cut(s) 427
BclI TGATCA 1 cut(s) 213
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 3 cut(s) 347, 438, 507
BfuAI ACCTGC 1 cut(s) 175
BfuI GTATCC 1 cut(s) 427
BisI GCNGC 2 cut(s) 201, 511
BlsI GCNGC 2 cut(s) 202, 512
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 2 cut(s) 62, 120
BmsI GCATC 1 cut(s) 403
BmtI GCTAGC 1 cut(s) 510
BpiI GAAGAC 1 cut(s) 470
Bpu14I TTCGAA 2 cut(s) 263, 403
BsaBI GATNNNNATC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 429
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 180
Bse8I GATNNNNATC 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 429
BseGI GGATG 3 cut(s) 81, 85, 418
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 2 cut(s) 46, 180
BseMII CTCAG 2 cut(s) 267, 345
BseXI GCAGC 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 2 cut(s) 184, 428
BslI CCNNNNNNNGG 2 cut(s) 46, 180
BsnI GGCC 2 cut(s) 184, 428
Bsp119I TTCGAA 2 cut(s) 263, 403
Bsp143I GATC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 429
BspACI CCGC 3 cut(s) 326, 510, 513
BspANI GGCC 2 cut(s) 184, 428
BspCNI CTCAG 2 cut(s) 268, 346
BspLI GGNNCC 2 cut(s) 62, 120
BspMI ACCTGC 1 cut(s) 175
BspOI GCTAGC 1 cut(s) 510
BspT104I TTCGAA 2 cut(s) 263, 403
BssECI CCNNGG 1 cut(s) 429
BssMI GATC 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 429
Bst6I CTCTTC 2 cut(s) 173, 279
BstBI TTCGAA 2 cut(s) 263, 403
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 3 cut(s) 276, 354, 374
BstDSI CCRYGG 1 cut(s) 429
BstENI CCTNNNNNAGG 1 cut(s) 178
BstF5I GGATG 3 cut(s) 81, 85, 418
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 1 cut(s) 503
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 470
BsuI GTATCC 1 cut(s) 427
BsuRI GGCC 2 cut(s) 184, 428
BtgI CCRYGG 1 cut(s) 429
BtsCI GGATG 3 cut(s) 81, 85, 418
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 32
CviAII CATG 2 cut(s) 430, 445
CviJI RGCY 7 cut(s) 50, 119, 184, 200, 400, 428, 506
CviKI_1 RGCY 7 cut(s) 50, 119, 184, 200, 400, 428, 506
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 3 cut(s) 276, 354, 374
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 426
Eam1104I CTCTTC 2 cut(s) 173, 279
EarI CTCTTC 2 cut(s) 173, 279
EciI GGCGGA 1 cut(s) 341
Eco130I CCWWGG 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 464
EcoNI CCTNNNNNAGG 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 2 cut(s) 433, 448
FaiI YATR 6 cut(s) 24, 56, 293, 320, 431, 446
FalI AAGNNNNNCTT 6 cut(s) 357, 389, 476, 508, 516, 548
FatI CATG 2 cut(s) 429, 444
FbaI TGATCA 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 201, 511
FokI GGATG 3 cut(s) 88, 92, 425
Fsp4HI GCNGC 2 cut(s) 201, 511
FspBI CTAG 3 cut(s) 347, 438, 507
GluI GCNGC 2 cut(s) 201, 511
HaeIII GGCC 2 cut(s) 184, 428
Hin1II CATG 2 cut(s) 433, 448
HinfI GANTC 2 cut(s) 125, 254
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 3 cut(s) 277, 483, 538
Hpy188III TCNNGA 4 cut(s) 7, 103, 122, 161
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 4 cut(s) 11, 149, 270, 478
HpyCH4V TGCA 3 cut(s) 170, 203, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 503
HpyF3I CTNAG 3 cut(s) 276, 354, 374
Hsp92II CATG 2 cut(s) 433, 448
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 5 cut(s) 77, 135, 174, 180, 224
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 403
MaeI CTAG 3 cut(s) 347, 438, 507
MaeIII GTNAC 1 cut(s) 255
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 4 cut(s) 152, 190, 296, 470
MfeI CAATTG 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 428
MluCI AATT 7 cut(s) 133, 186, 302, 332, 387, 393, 453
MluNI TGGCCA 1 cut(s) 428
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 4 cut(s) 51, 174, 403, 459
Mox20I TGGCCA 1 cut(s) 428
MscI TGGCCA 1 cut(s) 428
MseI TTAA 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 428
MunI CAATTG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 503
NcoI CCATGG 1 cut(s) 429
NdeII GATC 1 cut(s) 213
NheI GCTAGC 1 cut(s) 506
NlaIII CATG 2 cut(s) 433, 448
NlaIV GGNNCC 2 cut(s) 62, 120
NmuCI GTSAC 1 cut(s) 255
NspV TTCGAA 2 cut(s) 263, 403
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 2 cut(s) 202, 512
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
PpuMI RGGWCCY 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 158
PspN4I GGNNCC 2 cut(s) 62, 120
PspPI GGNCC 1 cut(s) 158
PspPPI RGGWCCY 1 cut(s) 158
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 201, 511
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 1 cut(s) 263
SetI ASST 8 cut(s) 22, 62, 160, 169, 243, 262, 402, 508
SfaNI GCATC 1 cut(s) 403
SfuI TTCGAA 2 cut(s) 263, 403
SinI GGWCC 1 cut(s) 158
SpeI ACTAGT 1 cut(s) 437
Sse9I AATT 7 cut(s) 133, 186, 302, 332, 387, 393, 453
SsiI CCGC 3 cut(s) 326, 510, 513
SspI AATATT 1 cut(s) 467
SspMI CTAG 3 cut(s) 347, 438, 507
StyI CCWWGG 1 cut(s) 429
TaqI TCGA 2 cut(s) 263, 403
TaqII GACCGA 1 cut(s) 464
TasI AATT 7 cut(s) 133, 186, 302, 332, 387, 393, 453
TatI WGTACW 1 cut(s) 31
TauI GCSGC 1 cut(s) 513
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseFI GTSAC 1 cut(s) 255
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 255
TspDTI ATGAA 1 cut(s) 96
VpaK11BI GGWCC 1 cut(s) 158
XagI CCTNNNNNAGG 1 cut(s) 178
XapI RAATTY 1 cut(s) 393
XspI CTAG 3 cut(s) 347, 438, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.