Rmu_sc0022529.1_g000001

No apical meristem-associated C-terminal domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022529.1
Physical Location & Seq
Reverse (-)
1 .. 645
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022529.1_g000001.1.cds

Sequence Viewer

Length: 465 bp
atggcttcgacgccattgaatttcactaacctcctcaaaaatgaatcagccttcaatgacctcaatgaaccacatttgacatacgatttcccagcgagtcaatatcgttcaccctatgaagagacacctacaagtgaagtttacactaatgaagagatgccatgtgcacctaacagcaagaaagcacaaagacaagccaacttcacaatcgaagaagacaaacttcttgtatctgcatggttgaatattggcttagacccagtgaaaggagccgatcaaaagaagaaacaattctggaaaagaattactgattactttgaaaaacacaagaagtggtatgttgaacggagtgaaaaatcattaacaaaccgttggacaacaatcagcagcactgtgagtaagttttgtggacattatgctcaaattgaacacttacggagaagtggttatacggaacaagagaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

18.19

Weight (kDa)

7.74

Isoelectric Point (pI)

63.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 6 cut(s) 19, 55, 244, 320, 344, 428
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 1 cut(s) 116
Alw44I GTGCAC 1 cut(s) 165
ApaLI GTGCAC 1 cut(s) 165
ApeKI GCWGC 1 cut(s) 387
ApoI RAATTY 1 cut(s) 19
Asp700I GAANNNNTTC 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 169
BarI GAAGNNNNNNTAC 2 cut(s) 433, 465
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 116
BisI GCNGC 1 cut(s) 388
BlsI GCNGC 1 cut(s) 389
BmiI GGNNCC 1 cut(s) 271
BmrI ACTGGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 254
BpiI GAAGAC 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 260
BseLI CCNNNNNNNGG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 260
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 1 cut(s) 399
BseYI CCCAGC 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 271
BsrI ACTGG 1 cut(s) 260
BssMI GATC 1 cut(s) 274
BssNI GRCGYC 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 371, 394
Bst6I CTCTTC 2 cut(s) 114, 147
BstACI GRCGYC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 253
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 1 cut(s) 274
BstSLI GKGCMC 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 399
BstV2I GAAGAC 1 cut(s) 222
BtsIMutI CAGTG 2 cut(s) 267, 390
CseI GACGC 1 cut(s) 19
CviAII CATG 2 cut(s) 162, 237
CviJI RGCY 5 cut(s) 5, 50, 197, 252, 272
CviKI_1 RGCY 5 cut(s) 5, 50, 197, 252, 272
DdeI CTNAG 1 cut(s) 253
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eam1104I CTCTTC 2 cut(s) 114, 147
EarI CTCTTC 2 cut(s) 114, 147
FaeI CATG 2 cut(s) 165, 240
FaiI YATR 7 cut(s) 82, 117, 163, 238, 339, 417, 450
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 2 cut(s) 161, 236
Fnu4HI GCNGC 1 cut(s) 388
Fsp4HI GCNGC 1 cut(s) 388
GluI GCNGC 1 cut(s) 388
GsaI CCCAGC 1 cut(s) 95
HgaI GACGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 2 cut(s) 165, 240
HinfI GANTC 2 cut(s) 44, 97
HphI GGTGA 1 cut(s) 102
Hpy166II GTNNAC 4 cut(s) 110, 142, 167, 410
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 4 cut(s) 110, 142, 167, 410
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 2 cut(s) 371, 394
HpyCH4V TGCA 2 cut(s) 167, 236
HpyF3I CTNAG 1 cut(s) 253
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 165, 240
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 3 cut(s) 105, 273, 280
Lsp1109I GCAGC 1 cut(s) 399
LweI GCATC 1 cut(s) 147
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 5 cut(s) 131, 164, 224, 227, 295
MhlI GDGCHC 1 cut(s) 169
MluCI AATT 4 cut(s) 19, 290, 303, 423
MlyI GAGTC 1 cut(s) 106
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 3 cut(s) 41, 44, 71
MroXI GAANNNNTTC 1 cut(s) 290
MseI TTAA 1 cut(s) 362
NdeII GATC 1 cut(s) 274
NlaIII CATG 2 cut(s) 165, 240
NlaIV GGNNCC 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 389
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PspFI CCCAGC 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 271
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 1 cut(s) 388
Sau3AI GATC 1 cut(s) 274
SchI GAGTC 1 cut(s) 106
SduI GDGCHC 1 cut(s) 169
SetI ASST 4 cut(s) 33, 63, 130, 172
SfaNI GCATC 1 cut(s) 147
Sse9I AATT 4 cut(s) 19, 290, 303, 423
SspI AATATT 1 cut(s) 247
TaaI ACNGT 2 cut(s) 371, 394
TaqI TCGA 2 cut(s) 8, 210
TasI AATT 4 cut(s) 19, 290, 303, 423
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TscAI CASTG 2 cut(s) 267, 397
TseI GCWGC 1 cut(s) 387
TspDTI ATGAA 4 cut(s) 57, 81, 132, 165
TspGWI ACGGA 2 cut(s) 361, 451
TspRI CASTG 2 cut(s) 267, 397
VneI GTGCAC 1 cut(s) 165
XapI RAATTY 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.