Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001050

Physical Location & Seq

Genomic Coordinates Forward (+)

4603626 .. 4610954

Gene Structure 7329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00390120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTACAGGCTTTCTTATTCAAAGAAGTATGGCGGGTGTGTTTCTTTGAAACCTCCGAAGGATGGGTTCATTATTGAGGATCTTGTCACCAATTTCAGTCCCTCATGGAGAAGATTACATTCCCTAATTAAATCTACAGCAAACGCTAAAAATATAGCGATAGCTTCTGTCATTAATTTTTCACGTGCTCCACTCTCCCACAACGACCCAAAGCGTTTCAACTCCGACCGAAGCTCAACCAAGAAAGAAGACGGTAGTGCAGACACTTCTTTCATGAAAACATTCCCAGTTCCTAAAGTGTTGAAGGGTATACCAAAACAGAAATATACTCTTTTAGAGTCAGCTAAAACTCATTATCATTCACCCCATGAAGATTGCACTTATGAAGAGACACCTACTAGTGAAGTTTACACTAATGAAGAGACGCCACGTGCATCTAATAGCAAGAAAGCACAAAGACAAGCCAACTTCACAATCGAAGAAGACAAACTTCTTGTATCTGCATGGCTGAATATTGGCTTAGACCCGTTGAAAGGAGCCGATCAAAAGAAGTGGTCTGCTGAACGGAGTGAAAAATCATTAACAAACCGTTGGTCAACAATCAGCAGCACCCTAAAGGCTCTTTGTATATTGACTTTGTCGATAGTGGAAGCAAAAGAGAATTTCAAGCTAGAGGAAGGTCATGCATTTGTACTTGACCATTGTTGGGTTGTTTTGAGGTTTCAGCAAAAATGGATGGATGAACATCAAAAAATCGAAAGTAAGAGAAAGCGGAAGGCTCCTTCTAGTAAGGCTGCAGATTCTATCAATTTAGAAGACGATGATACGAAAGCTCCCGAACCCGCAAGCTTGAAGAGACTAATTGGGAGAAAGGCTGCAAAGGAAGCTATCAAAAGGCAAAATCCAAAGAACAAAGTTGGTGAAAATGAGAATGAATCTTCAAAAACCCGTTCGAGTTGGAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

322

Amino Acids

36.54

Weight (kDa)

9.53

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	229 - 305	2.8e-09	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001050)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29014 FvH4_5g31251 FvH4_6g30412 FvH4_7g13271
prunus_persica	Prupe.4G287300_v2.0.a1
pyrus_communis	pycom02g25100
rosa_laevigata	RLG00000014831 RLG00000016178 RLG00000018236 RLG00000023938 RLG00000029894 RLG00000033609
rosa_multiflora	Rmu_sc0000353.1_g000032 Rmu_sc0000453.1_g000001 Rmu_sc0000453.1_g000002 Rmu_sc0006593.1_g000011 Rmu_sc0008708.1_g000004 Rmu_sc0016357.1_g000001 Rmu_sc0020646.1_g000003 Rmu_sc0021515.1_g000001 Rmu_sc0022529.1_g000001 Rmu_ssc0000007.1_g000036
rosa_roxburghii	Rroxscaffold_2G00136660 Rroxscaffold_3G00259610 Rroxscaffold_4G00321120 Rroxscaffold_5G00360960 Rroxscaffold_6G00390120 Rroxscaffold_7G00185660 Rroxscaffold_7G00210600
rosa_rugosa	Rorug01G0079400 Rorug01G0079500 Rorug05G0091700
rosa_samantha	Rh1AG035100 Rh1AG206900 Rh1AG407300 Rh1AG407400 Rh1BG078000 Rh1CG021000 Rh1CG022600 Rh1CG094400 Rh1CG106900 Rh1CG191800 Rh1DG101300 Rh1DG115800 Rh2AG342500 Rh2AG565100 Rh2CG424000 Rh2CG463100 Rh2DG368700 Rh3CG298500 Rh3DG294400 Rh4CG123400 Rh5CG341800 Rh6AG163100 Rh6AG163200 Rh6DG128500 Rh7BG334100 Rh7DG175800 Rh7DG284000
rosa_wichuraiana	Rw5G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	310
AciI	CCGC	3 cut(s)	33, 772, 843
AclWI	GGATC	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	661
AcvI	CACGTG	2 cut(s)	185, 431
AcyI	GRCGYC	1 cut(s)	425
AfaI	GTAC	2 cut(s)	5, 693
AfiI	CCNNNNNNNGG	3 cut(s)	62, 533, 706
AgsI	TTSAA	8 cut(s)	21, 49, 220, 304, 532, 667, 853, 942
AhlI	ACTAGT	1 cut(s)	398
AluBI	AGCT	7 cut(s)	164, 234, 344, 670, 833, 849, 887
AluI	AGCT	7 cut(s)	164, 234, 344, 670, 833, 849, 887
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	3 cut(s)	383, 416, 850
AlwI	GGATC	1 cut(s)	87
ApeKI	GCWGC	3 cut(s)	606, 794, 875
ApoI	RAATTY	1 cut(s)	661
ArsI	GACNNNNNNTTYG	2 cut(s)	578, 610
AseI	ATTAAT	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	281
AsuHPI	GGTGA	3 cut(s)	79, 354, 932
BbrPI	CACGTG	2 cut(s)	185, 431
BbsI	GAAGAC	3 cut(s)	255, 489, 822
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	3 cut(s)	618, 781, 862
BccI	CCATC	2 cut(s)	56, 730
BcoDI	GTCTC	3 cut(s)	383, 416, 850
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	3 cut(s)	399, 671, 786
BfmI	CTRYAG	2 cut(s)	135, 795
BisI	GCNGC	3 cut(s)	607, 795, 876
BlsI	GCNGC	3 cut(s)	608, 796, 877
BmiI	GGNNCC	2 cut(s)	538, 780
BmrI	ACTGGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	443
BmuI	ACTGGG	1 cut(s)	281
BpiI	GAAGAC	3 cut(s)	255, 489, 822
BsaAI	YACGTR	2 cut(s)	185, 431
BsaBI	GATNNNNATC	1 cut(s)	744
BsaHI	GRCGYC	1 cut(s)	425
BsaXI	ACNNNNNCTCC	2 cut(s)	817, 847
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 533, 706
Bse1I	ACTGG	1 cut(s)	287
Bse8I	GATNNNNATC	1 cut(s)	744
BseGI	GGATG	3 cut(s)	67, 741, 745
BseJI	GATNNNNATC	1 cut(s)	744
BseLI	CCNNNNNNNGG	3 cut(s)	62, 533, 706
BseNI	ACTGG	1 cut(s)	287
BseXI	GCAGC	3 cut(s)	618, 781, 862
BsgI	GTGCAG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	3 cut(s)	62, 533, 706
BsmAI	GTCTC	3 cut(s)	383, 416, 850
BsmBI	CGTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	79, 541
BspACI	CCGC	3 cut(s)	33, 772, 843
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	538, 780
BspMAI	CTGCAG	1 cut(s)	799
BspPI	GGATC	1 cut(s)	87
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	287
BssMI	GATC	2 cut(s)	79, 541
BssNAI	GTATAC	1 cut(s)	311
BssNI	GRCGYC	1 cut(s)	425
Bst1107I	GTATAC	1 cut(s)	311
Bst4CI	ACNGT	2 cut(s)	254, 590
Bst6I	CTCTTC	4 cut(s)	381, 414, 848, 956
BstACI	GRCGYC	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	2 cut(s)	185, 431
BstC8I	GCNNGC	1 cut(s)	847
BstDEI	CTNAG	1 cut(s)	520
BstF5I	GGATG	3 cut(s)	67, 741, 745
BstKTI	GATC	2 cut(s)	82, 544
BstMAI	GTCTC	3 cut(s)	383, 416, 850
BstMBI	GATC	2 cut(s)	79, 541
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	884
BstSFI	CTRYAG	2 cut(s)	135, 795
BstV1I	GCAGC	3 cut(s)	618, 781, 862
BstV2I	GAAGAC	3 cut(s)	255, 489, 822
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BstZ17I	GTATAC	1 cut(s)	311
BtsCI	GGATG	3 cut(s)	67, 741, 745
Cac8I	GCNNGC	1 cut(s)	847
CciI	TCATGA	1 cut(s)	273
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	2 cut(s)	4, 692
CspCI	CAANNNNNGTGG	2 cut(s)	533, 568
CviAII	CATG	5 cut(s)	105, 274, 368, 504, 683
CviQI	GTAC	2 cut(s)	4, 692
DdeI	CTNAG	1 cut(s)	520
DpnI	GATC	2 cut(s)	81, 543
DpnII	GATC	2 cut(s)	79, 541
Eam1104I	CTCTTC	4 cut(s)	381, 414, 848, 956
EarI	CTCTTC	4 cut(s)	381, 414, 848, 956
Eco72I	CACGTG	2 cut(s)	185, 431
EcoT22I	ATGCAT	1 cut(s)	688
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	5 cut(s)	108, 277, 371, 507, 686
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	5 cut(s)	104, 273, 367, 503, 682
FauI	CCCGC	2 cut(s)	26, 850
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	3 cut(s)	607, 795, 876
FokI	GGATG	3 cut(s)	74, 748, 752
Fsp4HI	GCNGC	3 cut(s)	607, 795, 876
FspBI	CTAG	3 cut(s)	399, 671, 786
GluI	GCNGC	3 cut(s)	607, 795, 876
HgaI	GACGC	1 cut(s)	433
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	5 cut(s)	108, 277, 371, 507, 686
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HindIII	AAGCTT	1 cut(s)	847
HinfI	GANTC	3 cut(s)	338, 800, 935
HphI	GGTGA	3 cut(s)	79, 354, 932
Hpy166II	GTNNAC	3 cut(s)	311, 409, 597
Hpy188I	TCNGA	2 cut(s)	57, 226
Hpy188III	TCNNGA	2 cut(s)	274, 836
Hpy8I	GTNNAC	3 cut(s)	311, 409, 597
HpyAV	CCTTC	5 cut(s)	52, 298, 671, 769, 792
HpyCH4III	ACNGT	2 cut(s)	254, 590
HpyCH4IV	ACGT	2 cut(s)	184, 430
HpyCH4V	TGCA	7 cut(s)	260, 378, 434, 503, 686, 797, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	884
HpyF3I	CTNAG	1 cut(s)	520
HpySE526I	ACGT	2 cut(s)	184, 430
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	5 cut(s)	108, 277, 371, 507, 686
Kzo9I	GATC	2 cut(s)	79, 541
LmnI	GCTCC	4 cut(s)	193, 536, 784, 838
LpnPI	CCDG	1 cut(s)	300
Lsp1109I	GCAGC	3 cut(s)	618, 781, 862
LweI	GCATC	1 cut(s)	443
MaeI	CTAG	3 cut(s)	399, 671, 786
MaeII	ACGT	2 cut(s)	184, 430
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	2 cut(s)	81, 543
MboI	GATC	2 cut(s)	79, 541
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	6 cut(s)	91, 126, 175, 661, 808, 861
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	2 cut(s)	249, 938
MnlI	CCTC	5 cut(s)	63, 70, 112, 667, 711
Mph1103I	ATGCAT	1 cut(s)	688
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	3 cut(s)	129, 174, 581
MwoI	GCNNNNNNNGC	1 cut(s)	884
NdeII	GATC	2 cut(s)	79, 541
NlaIII	CATG	5 cut(s)	108, 277, 371, 507, 686
NlaIV	GGNNCC	2 cut(s)	538, 780
NmuCI	GTSAC	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	688
PagI	TCATGA	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	800, 935
PflFI	GACNNNGTC	1 cut(s)	637
PkrI	GCNGC	3 cut(s)	608, 796, 877
PleI	GAGTC	1 cut(s)	346
PmaCI	CACGTG	2 cut(s)	185, 431
PmlI	CACGTG	2 cut(s)	185, 431
PpsI	GAGTC	1 cut(s)	346
Ppu21I	YACGTR	2 cut(s)	185, 431
PshBI	ATTAAT	1 cut(s)	174
PspCI	CACGTG	2 cut(s)	185, 431
PspN4I	GGNNCC	2 cut(s)	538, 780
PstI	CTGCAG	1 cut(s)	799
PsuI	RGATCY	1 cut(s)	79
PsyI	GACNNNGTC	1 cut(s)	637
RsaI	GTAC	2 cut(s)	5, 693
RsaNI	GTAC	2 cut(s)	4, 692
SaqAI	TTAA	3 cut(s)	129, 174, 581
SatI	GCNGC	3 cut(s)	607, 795, 876
Sau3AI	GATC	2 cut(s)	79, 541
SchI	GAGTC	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	1 cut(s)	443
SfcI	CTRYAG	2 cut(s)	135, 795
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	6 cut(s)	91, 126, 175, 661, 808, 861
SsiI	CCGC	3 cut(s)	33, 772, 843
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	3 cut(s)	399, 671, 786
TaaI	ACNGT	2 cut(s)	254, 590
TaiI	ACGT	2 cut(s)	187, 433
TaqI	TCGA	4 cut(s)	477, 641, 756, 953
TaqII	GACCGA	1 cut(s)	243
TasI	AATT	6 cut(s)	91, 126, 175, 661, 808, 861
TatI	WGTACW	2 cut(s)	3, 691
TfiI	GAWTC	2 cut(s)	800, 935
Tru1I	TTAA	3 cut(s)	129, 174, 581
Tru9I	TTAA	3 cut(s)	129, 174, 581
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	3 cut(s)	606, 794, 875
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	8 cut(s)	58, 262, 290, 384, 399, 432, 756, 948
TspGWI	ACGGA	1 cut(s)	580
Tth111I	GACNNNGTC	1 cut(s)	637
VspI	ATTAAT	1 cut(s)	174
XapI	RAATTY	1 cut(s)	661
XmiI	GTMKAC	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	3 cut(s)	399, 671, 786
Zsp2I	ATGCAT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.