Prupe.4G287300_v2.0.a1

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001050
Physical Location & Seq
Forward (+)
25181002 .. 25181915
914 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G287300.1

Sequence Viewer

Length: 732 bp
ATGGCCGAAAGTTCAAAGCAAAAAGGTGCAAATTACTCCATCGATGAAGATGTTGCTCTATGCCGAGCTTGGATAATCATTAGTGAAGATCCAATTATCAGAAATTGTCAATCAATCATACAATTTCATCTCGATGCCCAAGAAGTTAGATCATCAAAGAGCTTGAAATCGCTTTGGATTAACATCTCCCAAATGTGCAACAAATTCTCCGAGTGTCTTACTCAAGTGGAAAGGTTGAACAAGAGTGGCCAAAATGAAAATGACAATAGGACCAAGAAAGTATTCCTCATTGACCACTGTTGGAATGTTGTTCAACATGCTCATAAGTGGCAACCCTTTGAAGGGTTTCAATCCTCCCCTTTTATGATGATTCACCGTATGAATCCATTCCAGAAACTCAAGCACCCCCACAAACCTCAAACCCATGGCGAAGGCCTATGGGACACAAAAAAAGCTAAGGAGCTAAAAAGAAAGGCTATTGTGGAAGAGTCATCTCAAGATGATAAAGAGATGAAGGAAATTATGAGGTCTTACAAAGATTGTATGATTGAGAACAAAGAGTTGAAGGTTATGTTTAAGGAAACCGCCACAATCCAAACTCCGGCAATAAGGCGATGGGTCCAACAGAAACAAGCTGATATTATCGCAAAGAGTTCTTCCCGTTCGTTAACTTTGAGGATGAAGTCTATCGTCCCCAACCCCCAGAAGATGATGATTTCTAGAATAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

244

Amino Acids

28.43

Weight (kDa)

9.46

Isoelectric Point (pI)

61.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 585
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 2 cut(s) 3, 247
AcsI RAATTY 1 cut(s) 203
AfiI CCNNNNNNNGG 3 cut(s) 341, 342, 601
AgsI TTSAA 7 cut(s) 15, 166, 238, 314, 341, 350, 565
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 5 cut(s) 68, 162, 455, 463, 635
AluI AGCT 5 cut(s) 68, 162, 455, 463, 635
AlwI GGATC 1 cut(s) 83
AoxI GGCC 3 cut(s) 3, 247, 433
ApoI RAATTY 1 cut(s) 203
Asp700I GAANNNNTTC 3 cut(s) 281, 345, 386
AspS9I GGNCC 2 cut(s) 270, 619
AsuHPI GGTGA 1 cut(s) 365
AvaII GGWCC 2 cut(s) 270, 619
BalI TGGCCA 1 cut(s) 249
BccI CCATC 2 cut(s) 47, 609
BfaI CTAG 1 cut(s) 720
Bme18I GGWCC 2 cut(s) 270, 619
BmgT120I GGNCC 2 cut(s) 270, 619
BmiI GGNNCC 1 cut(s) 620
BmsI GCATC 1 cut(s) 124
Bpu10I CCTNAGC 1 cut(s) 456
BpuEI CTTGAG 3 cut(s) 207, 383, 480
Bsa29I ATCGAT 1 cut(s) 42
BsaBI GATNNNNATC 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 424
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 342, 601
Bse8I GATNNNNATC 1 cut(s) 182
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 424
BseGI GGATG 1 cut(s) 684
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 3 cut(s) 341, 342, 601
BshFI GGCC 3 cut(s) 5, 249, 435
BshVI ATCGAT 1 cut(s) 42
BsiSI CCGG 1 cut(s) 602
BslFI GGGAC 2 cut(s) 455, 677
BslI CCNNNNNNNGG 3 cut(s) 341, 342, 601
BsmFI GGGAC 2 cut(s) 455, 677
BsnI GGCC 3 cut(s) 5, 249, 435
Bsp143I GATC 2 cut(s) 88, 149
Bsp19I CCATGG 1 cut(s) 424
BspACI CCGC 1 cut(s) 585
BspANI GGCC 3 cut(s) 5, 249, 435
BspDI ATCGAT 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 620
BspPI GGATC 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 424
BssMI GATC 2 cut(s) 88, 149
BssT1I CCWWGG 1 cut(s) 424
Bst4CI ACNGT 2 cut(s) 299, 377
Bst6I CTCTTC 1 cut(s) 480
BstDEI CTNAG 1 cut(s) 456
BstDSI CCRYGG 1 cut(s) 424
BstF5I GGATG 1 cut(s) 684
BstKTI GATC 2 cut(s) 91, 152
BstMBI GATC 2 cut(s) 88, 149
BstNSI RCATGY 1 cut(s) 320
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 3 cut(s) 5, 249, 435
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 424
BtgZI GCGATG 1 cut(s) 628
BtsCI GGATG 1 cut(s) 684
BtsIMutI CAGTG 1 cut(s) 295
Cfr13I GGNCC 2 cut(s) 270, 619
ClaI ATCGAT 1 cut(s) 42
CviAII CATG 2 cut(s) 317, 425
CviJI RGCY 9 cut(s) 5, 68, 162, 249, 435, 455, 463, 476, 635
CviKI_1 RGCY 9 cut(s) 5, 68, 162, 249, 435, 455, 463, 476, 635
DdeI CTNAG 1 cut(s) 456
DpnI GATC 2 cut(s) 90, 151
DpnII GATC 2 cut(s) 88, 149
EaeI YGGCCR 2 cut(s) 3, 247
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 424
Eco147I AGGCCT 1 cut(s) 435
Eco47I GGWCC 2 cut(s) 270, 619
EcoT14I CCWWGG 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 424
FaeI CATG 2 cut(s) 320, 428
FaqI GGGAC 2 cut(s) 455, 677
FatI CATG 2 cut(s) 316, 424
FokI GGATG 1 cut(s) 691
FspBI CTAG 1 cut(s) 720
HaeIII GGCC 3 cut(s) 5, 249, 435
HapII CCGG 1 cut(s) 602
Hin1II CATG 2 cut(s) 320, 428
HincII GTYRAC 1 cut(s) 669
HindII GTYRAC 1 cut(s) 669
HinfI GANTC 3 cut(s) 370, 382, 488
HpaI GTTAAC 1 cut(s) 669
HpaII CCGG 1 cut(s) 602
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 1 cut(s) 669
Hpy188I TCNGA 2 cut(s) 101, 211
Hpy188III TCNNGA 4 cut(s) 131, 391, 497, 720
Hpy8I GTNNAC 1 cut(s) 669
HpyAV CCTTC 4 cut(s) 335, 425, 508, 559
HpyCH4III ACNGT 2 cut(s) 299, 377
HpyCH4V TGCA 2 cut(s) 29, 198
HpyF3I CTNAG 1 cut(s) 456
Hsp92II CATG 2 cut(s) 320, 428
KspAI GTTAAC 1 cut(s) 669
Kzo9I GATC 2 cut(s) 88, 149
LmnI GCTCC 1 cut(s) 460
LpnPI CCDG 3 cut(s) 404, 615, 716
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 720
MalI GATC 2 cut(s) 90, 151
MboI GATC 2 cut(s) 88, 149
MboII GAAGA 5 cut(s) 59, 98, 497, 648, 718
MflI RGATCY 1 cut(s) 88
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 6 cut(s) 31, 93, 103, 122, 203, 519
MluNI TGGCCA 1 cut(s) 249
MlyI GAGTC 1 cut(s) 497
MmeI TCCRAC 2 cut(s) 281, 646
MnlI CCTC 5 cut(s) 296, 364, 426, 519, 669
Mox20I TGGCCA 1 cut(s) 249
MroXI GAANNNNTTC 3 cut(s) 281, 345, 386
MscI TGGCCA 1 cut(s) 249
MseI TTAA 4 cut(s) 180, 576, 668, 730
MslI CAYNNNNRTG 1 cut(s) 132
Msp20I TGGCCA 1 cut(s) 249
MspI CCGG 1 cut(s) 602
NcoI CCATGG 1 cut(s) 424
NdeII GATC 2 cut(s) 88, 149
NlaIII CATG 2 cut(s) 320, 428
NlaIV GGNNCC 1 cut(s) 620
NmeAIII GCCGAG 1 cut(s) 89
NspI RCATGY 1 cut(s) 320
PceI AGGCCT 1 cut(s) 435
PdmI GAANNNNTTC 3 cut(s) 281, 345, 386
PfeI GAWTC 2 cut(s) 370, 382
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
PspN4I GGNNCC 1 cut(s) 620
PspPI GGNCC 2 cut(s) 270, 619
PsuI RGATCY 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 4 cut(s) 180, 576, 668, 730
Sau3AI GATC 2 cut(s) 88, 149
Sau96I GGNCC 2 cut(s) 270, 619
SchI GAGTC 1 cut(s) 497
SfaNI GCATC 1 cut(s) 124
SinI GGWCC 2 cut(s) 270, 619
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 3 cut(s) 222, 398, 495
SmoI CTYRAG 3 cut(s) 222, 398, 495
Sse9I AATT 6 cut(s) 31, 93, 103, 122, 203, 519
SseBI AGGCCT 1 cut(s) 435
SsiI CCGC 1 cut(s) 585
SspMI CTAG 1 cut(s) 720
StuI AGGCCT 1 cut(s) 435
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 2 cut(s) 299, 377
TaqI TCGA 2 cut(s) 42, 132
TasI AATT 6 cut(s) 31, 93, 103, 122, 203, 519
TfiI GAWTC 2 cut(s) 370, 382
Tru1I TTAA 4 cut(s) 180, 576, 668, 730
Tru9I TTAA 4 cut(s) 180, 576, 668, 730
TscAI CASTG 1 cut(s) 302
TspDTI ATGAA 6 cut(s) 60, 116, 270, 395, 527, 695
TspRI CASTG 1 cut(s) 302
VpaK11BI GGWCC 2 cut(s) 270, 619
XapI RAATTY 1 cut(s) 203
XbaI TCTAGA 1 cut(s) 719
XceI RCATGY 1 cut(s) 320
XmnI GAANNNNTTC 3 cut(s) 281, 345, 386
XspI CTAG 1 cut(s) 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.