RLG00000018236

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001050
Physical Location & Seq
Reverse (-)
27418257 .. 27420041
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018236

Sequence Viewer

Length: 738 bp
ATGGCTTTGACGCCATTGAATTTCACTAACCTTCTCAACAATAAATCAGCCTTCAATGACCTTAATGAACCACATTTGACATATGATTTCCCGGTGAGTCAATATCATTCACCCTATGAAGATTGCACTTATGAAGAGACATCTACTAGTGAAGTTTACACTAATGAAGAGACGCCACTGGAAGCAAAAGAGAATTTCAAGCTAGAGGAAGGTCATGCATTTGTACTTGACCATTGTTGGGTTGTTTTGAGGTTTCAGCAAAAATGGATGGATGAACATCAAAAAATCGAAAGTAAGAGAAAGTGGAAGGCTCCTTCTAGTAAGGCTGCAGATTCTATCAATTTAGAAGACGATGTTACGGAAGCTCCTGAACCTGCAAGCTTGAAGAGACCAATTGGGAGAAAGGCTGCAAAGGAAGCTATCAAAAAGGCAAAATCCAAAGAACAGCTTGGTGAAAATGAGAATGAATCTTCAAAAACCCATTATGAGTTGGAAGAGTTGAGGGCAAGGAGATTAGAAAGTGACCGTATAAAGGCAGAACAATTTAAGTTGCTGCTTGCTACTGAGCAAAAGCAAGTTGCTTTTAGAGAAAAGGAAATTGAACTTCAGACCCGAAGTGAGGATGCAAAAATAATGTCTATGGATACTAGTGTCATGCCTCCATTTCAAGCAGAATATTTTATCAGTCTTCAGAAGGAAATCTTGGCAAAAAGAGCTAGTAGGAATAAAAATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

246

Amino Acids

28.5

Weight (kDa)

5.56

Isoelectric Point (pI)

61.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 73 - 234 1.5e-17 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 382
AcsI RAATTY 2 cut(s) 19, 193
AcuI CTGAAG 2 cut(s) 590, 674
AcyI GRCGYC 2 cut(s) 11, 173
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 3 cut(s) 238, 532, 619
AgsI TTSAA 7 cut(s) 19, 55, 199, 385, 474, 602, 668
AhlI ACTAGT 2 cut(s) 146, 647
AjuI GAANNNNNNNTTGG 2 cut(s) 686, 718
AluBI AGCT 6 cut(s) 202, 365, 381, 419, 448, 716
AluI AGCT 6 cut(s) 202, 365, 381, 419, 448, 716
Alw26I GTCTC 3 cut(s) 131, 164, 382
ApeKI GCWGC 3 cut(s) 326, 407, 553
ApoI RAATTY 2 cut(s) 19, 193
ArsI GACNNNNNNTTYG 2 cut(s) 620, 652
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 3 cut(s) 102, 106, 464
BaeI ACNNNNGTAYC 2 cut(s) 636, 669
BbsI GAAGAC 2 cut(s) 354, 680
BbvI GCAGC 3 cut(s) 313, 394, 540
BccI CCATC 1 cut(s) 262
BciVI GTATCC 1 cut(s) 637
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 3 cut(s) 131, 164, 382
BcuI ACTAGT 2 cut(s) 146, 647
BfaI CTAG 5 cut(s) 147, 203, 318, 648, 717
BfmI CTRYAG 1 cut(s) 327
BfuAI ACCTGC 1 cut(s) 382
BfuI GTATCC 1 cut(s) 637
BisI GCNGC 3 cut(s) 327, 408, 554
BlsI GCNGC 3 cut(s) 328, 409, 555
Bme1390I CCNGG 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 613
BpiI GAAGAC 2 cut(s) 354, 680
BpuMI CCSGG 1 cut(s) 92
BsaBI GATNNNNATC 1 cut(s) 276
BsaHI GRCGYC 2 cut(s) 11, 173
BsaI GGTCTC 1 cut(s) 382
BsaXI ACNNNNNCTCC 2 cut(s) 349, 379
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 532, 619
Bse1I ACTGG 1 cut(s) 183
Bse8I GATNNNNATC 1 cut(s) 276
BseGI GGATG 3 cut(s) 273, 277, 628
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 3 cut(s) 238, 532, 619
BseMII CTCAG 1 cut(s) 555
BseNI ACTGG 1 cut(s) 183
BseXI GCAGC 3 cut(s) 313, 394, 540
BsiSI CCGG 1 cut(s) 92
BslI CCNNNNNNNGG 3 cut(s) 238, 532, 619
BsmAI GTCTC 3 cut(s) 131, 164, 382
BsmBI CGTCTC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 382
BspCNI CTCAG 1 cut(s) 556
BspLI GGNNCC 1 cut(s) 312
BspMAI CTGCAG 1 cut(s) 331
BspMI ACCTGC 1 cut(s) 382
BspTNI GGTCTC 1 cut(s) 382
BsrI ACTGG 1 cut(s) 183
BssNI GRCGYC 2 cut(s) 11, 173
Bst4CI ACNGT 1 cut(s) 527
Bst6I CTCTTC 4 cut(s) 129, 162, 380, 489
BstACI GRCGYC 2 cut(s) 11, 173
BstC8I GCNNGC 2 cut(s) 379, 558
BstDEI CTNAG 1 cut(s) 564
BstF5I GGATG 3 cut(s) 273, 277, 628
BstMAI GTCTC 3 cut(s) 131, 164, 382
BstMWI GCNNNNNNNGC 2 cut(s) 416, 713
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 327
BstV1I GCAGC 3 cut(s) 313, 394, 540
BstV2I GAAGAC 2 cut(s) 354, 680
BsuI GTATCC 1 cut(s) 637
BtsCI GGATG 3 cut(s) 273, 277, 628
BtsIMutI CAGTG 1 cut(s) 176
BveI ACCTGC 1 cut(s) 382
Cac8I GCNNGC 2 cut(s) 379, 558
CseI GACGC 2 cut(s) 19, 181
Csp6I GTAC 1 cut(s) 224
CviAII CATG 2 cut(s) 215, 655
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 1 cut(s) 564
Eam1104I CTCTTC 4 cut(s) 129, 162, 380, 489
EarI CTCTTC 4 cut(s) 129, 162, 380, 489
Eco31I GGTCTC 1 cut(s) 382
Eco57I CTGAAG 2 cut(s) 590, 674
EcoT22I ATGCAT 1 cut(s) 220
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 2 cut(s) 218, 658
FaiI YATR 9 cut(s) 82, 84, 117, 132, 216, 486, 530, 641, 656
FalI AAGNNNNNCTT 4 cut(s) 432, 464, 686, 718
FatI CATG 2 cut(s) 214, 654
FauNDI CATATG 1 cut(s) 82
Fnu4HI GCNGC 3 cut(s) 327, 408, 554
FokI GGATG 3 cut(s) 280, 284, 635
Fsp4HI GCNGC 3 cut(s) 327, 408, 554
FspBI CTAG 5 cut(s) 147, 203, 318, 648, 717
GluI GCNGC 3 cut(s) 327, 408, 554
HapII CCGG 1 cut(s) 92
HgaI GACGC 2 cut(s) 19, 181
Hin1I GRCGYC 2 cut(s) 11, 173
Hin1II CATG 2 cut(s) 218, 658
HindIII AAGCTT 1 cut(s) 379
HinfI GANTC 3 cut(s) 97, 332, 467
HpaII CCGG 1 cut(s) 92
HphI GGTGA 3 cut(s) 102, 106, 464
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 609, 693
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 6 cut(s) 41, 61, 203, 301, 324, 688
HpyCH4III ACNGT 1 cut(s) 527
HpyCH4V TGCA 6 cut(s) 126, 218, 329, 377, 410, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 416, 713
HpyF3I CTNAG 1 cut(s) 564
Hsp92I GRCGYC 2 cut(s) 11, 173
Hsp92II CATG 2 cut(s) 218, 658
LmnI GCTCC 2 cut(s) 316, 370
LpnPI CCDG 4 cut(s) 105, 164, 381, 387
Lsp1109I GCAGC 3 cut(s) 313, 394, 540
LweI GCATC 1 cut(s) 613
MaeI CTAG 5 cut(s) 147, 203, 318, 648, 717
MaeIII GTNAC 2 cut(s) 355, 521
MboII GAAGA 8 cut(s) 131, 146, 179, 359, 397, 462, 506, 680
MfeI CAATTG 1 cut(s) 393
MluCI AATT 6 cut(s) 19, 193, 340, 393, 542, 597
MlyI GAGTC 1 cut(s) 106
MmeI TCCRAC 1 cut(s) 471
MnlI CCTC 5 cut(s) 199, 243, 495, 613, 669
Mph1103I ATGCAT 1 cut(s) 220
MseI TTAA 2 cut(s) 63, 546
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 92
MunI CAATTG 1 cut(s) 393
MwoI GCNNNNNNNGC 2 cut(s) 416, 713
NciI CCSGG 1 cut(s) 92
NdeI CATATG 1 cut(s) 82
NlaIII CATG 2 cut(s) 218, 658
NlaIV GGNNCC 1 cut(s) 312
NmuCI GTSAC 1 cut(s) 521
NsiI ATGCAT 1 cut(s) 220
PfeI GAWTC 2 cut(s) 332, 467
PkrI GCNGC 3 cut(s) 328, 409, 555
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 312
PstI CTGCAG 1 cut(s) 331
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SaqAI TTAA 2 cut(s) 63, 546
SatI GCNGC 3 cut(s) 327, 408, 554
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 92
SfaNI GCATC 1 cut(s) 613
SfcI CTRYAG 1 cut(s) 327
SpeI ACTAGT 2 cut(s) 146, 647
Sse9I AATT 6 cut(s) 19, 193, 340, 393, 542, 597
SspI AATATT 1 cut(s) 677
SspMI CTAG 5 cut(s) 147, 203, 318, 648, 717
StyD4I CCNGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 527
TaqI TCGA 1 cut(s) 288
TasI AATT 6 cut(s) 19, 193, 340, 393, 542, 597
TatI WGTACW 1 cut(s) 223
TfiI GAWTC 2 cut(s) 332, 467
Tru1I TTAA 2 cut(s) 63, 546
Tru9I TTAA 2 cut(s) 63, 546
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 1 cut(s) 521
TseI GCWGC 3 cut(s) 326, 407, 553
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 6 cut(s) 81, 132, 147, 180, 288, 480
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 1 cut(s) 183
XapI RAATTY 2 cut(s) 19, 193
XspI CTAG 5 cut(s) 147, 203, 318, 648, 717
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.