Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001050

Physical Location & Seq

Genomic Coordinates Reverse (-)

62645379 .. 62648985

Gene Structure 3607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG463100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTACCAATCCCAAAAGGGAGATGCCAATTGTGCTGATCCAGTATATATCGATTGCACTTATGAAGAGACTCCTACAAATGAAGTTTACACTTATGAAGAGACACCACGTGCACCTAGCAGCAAGAAAGCACAAAGACAAGCCAACTTCACAATCGAAGAAGACAAACTTCTTGTATCTGCATGGCTCAATATTGGTTTAGACCCGGTGAAAGGAGCCGTTAGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

76

Amino Acids

8.59

Weight (kDa)

4.79

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001050)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29014 FvH4_5g31251 FvH4_6g30412 FvH4_7g13271
prunus_persica	Prupe.4G287300_v2.0.a1
pyrus_communis	pycom02g25100
rosa_laevigata	RLG00000014831 RLG00000016178 RLG00000018236 RLG00000023938 RLG00000029894 RLG00000033609
rosa_multiflora	Rmu_sc0000353.1_g000032 Rmu_sc0000453.1_g000001 Rmu_sc0000453.1_g000002 Rmu_sc0006593.1_g000011 Rmu_sc0008708.1_g000004 Rmu_sc0016357.1_g000001 Rmu_sc0020646.1_g000003 Rmu_sc0021515.1_g000001 Rmu_sc0022529.1_g000001 Rmu_ssc0000007.1_g000036
rosa_roxburghii	Rroxscaffold_2G00136660 Rroxscaffold_3G00259610 Rroxscaffold_4G00321120 Rroxscaffold_5G00360960 Rroxscaffold_6G00390120 Rroxscaffold_7G00185660 Rroxscaffold_7G00210600
rosa_rugosa	Rorug01G0079400 Rorug01G0079500 Rorug05G0091700
rosa_samantha	Rh1AG035100 Rh1AG206900 Rh1AG407300 Rh1AG407400 Rh1BG078000 Rh1CG021000 Rh1CG022600 Rh1CG094400 Rh1CG106900 Rh1CG191800 Rh1DG101300 Rh1DG115800 Rh2AG342500 Rh2AG565100 Rh2CG424000 Rh2CG463100 Rh2DG368700 Rh3CG298500 Rh3DG294400 Rh4CG123400 Rh5CG341800 Rh6AG163100 Rh6AG163200 Rh6DG128500 Rh7BG334100 Rh7DG175800 Rh7DG284000
rosa_wichuraiana	Rw5G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	32
AcvI	CACGTG	1 cut(s)	110
AdeI	CACNNNGTG	1 cut(s)	110
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	212
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	2 cut(s)	62, 95
Alw44I	GTGCAC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	32
ApaLI	GTGCAC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	120
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	220
BaeGI	GKGCMC	1 cut(s)	115
BbrPI	CACGTG	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	132
BceAI	ACGGC	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	62, 95
BfaI	CTAG	1 cut(s)	117
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	206
Bsa29I	ATCGAT	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	41
BseCI	ATCGAT	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	132
BshVI	ATCGAT	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	2 cut(s)	62, 95
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	37
BspDI	ATCGAT	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	217
BspPI	GGATC	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	41
BssMI	GATC	1 cut(s)	37
Bst6I	CTCTTC	2 cut(s)	60, 93
BstBAI	YACGTR	1 cut(s)	110
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	2 cut(s)	62, 95
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	132
BstV2I	GAAGAC	1 cut(s)	168
Bsu15I	ATCGAT	1 cut(s)	51
BsuTUI	ATCGAT	1 cut(s)	51
ClaI	ATCGAT	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	183
CviJI	RGCY	3 cut(s)	143, 187, 218
CviKI_1	RGCY	3 cut(s)	143, 187, 218
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
DraIII	CACNNNGTG	1 cut(s)	110
Eam1104I	CTCTTC	2 cut(s)	60, 93
EarI	CTCTTC	2 cut(s)	60, 93
Eco72I	CACGTG	1 cut(s)	110
FaeI	CATG	1 cut(s)	186
FaiI	YATR	5 cut(s)	46, 48, 63, 96, 184
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	1 cut(s)	182
Fnu4HI	GCNGC	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	121
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	1 cut(s)	121
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	1 cut(s)	186
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	88, 113
Hpy8I	GTNNAC	2 cut(s)	88, 113
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	3 cut(s)	57, 113, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	2 cut(s)	54, 219
Lsp1109I	GCAGC	1 cut(s)	132
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	109
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	4 cut(s)	77, 110, 170, 173
MfeI	CAATTG	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	64
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	206
MunI	CAATTG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	32
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	186
NlaIV	GGNNCC	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	64
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	110
PspCI	CACGTG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	217
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	2 cut(s)	112, 118
SfaNI	GCATC	1 cut(s)	13
Sse9I	AATT	1 cut(s)	28
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	204
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	2 cut(s)	51, 156
TasI	AATT	1 cut(s)	28
TseI	GCWGC	1 cut(s)	120
TspDTI	ATGAA	3 cut(s)	78, 96, 111
VneI	GTGCAC	1 cut(s)	111
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.