Rroxscaffold_7G00185660

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001050
Physical Location & Seq
Reverse (-)
25078475 .. 25078813
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00185660.1

Sequence Viewer

Length: 339 bp
ATGGCTTCGATGCCATTGAATTTCACTAACCTCCTTAACAACGAATCAGCCCTCGGTGACCTTAATGAACCACACGATTTCCCGGCGAGTCGGTATCAATCCAATGGTTCTACTTATGCTCATTCACCATATGAAGATTGCACTAATGAAGAGACTCTTACAAATGAAGTTTACACTTACAAAGAGACACCACGTGCACCTAGCAGCAAGAAAGCACAAAGACAAGCCCAAAGACAAGCCAACTTCACAATCGAAGAAGACAAACTTCTTGTATCTGCATGGCTCAATATTGGTTTAGACCCGGTGAAAGGAGCCGTTAGAATGGCCGTTGTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

112

Amino Acids

12.52

Weight (kDa)

5.06

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 1 cut(s) 19
AcvI CACGTG 1 cut(s) 194
AdeI CACNNNGTG 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 308
AgsI TTSAA 1 cut(s) 19
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 2 cut(s) 146, 179
Alw44I GTGCAC 1 cut(s) 195
AoxI GGCC 1 cut(s) 324
ApaLI GTGCAC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 19
AsuC2I CCSGG 2 cut(s) 83, 302
AsuHPI GGTGA 3 cut(s) 68, 117, 316
BaeGI GKGCMC 1 cut(s) 199
BbrPI CACGTG 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 216
BceAI ACGGC 2 cut(s) 299, 311
BcnI CCSGG 2 cut(s) 83, 302
BcoDI GTCTC 2 cut(s) 146, 179
BfaI CTAG 2 cut(s) 201, 337
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
Bme1390I CCNGG 2 cut(s) 83, 302
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 2 cut(s) 83, 302
BpiI GAAGAC 1 cut(s) 264
BpuMI CCSGG 2 cut(s) 83, 302
BsaAI YACGTR 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 308
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 1 cut(s) 216
BshFI GGCC 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 199
BsiSI CCGG 2 cut(s) 83, 302
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 2 cut(s) 146, 179
BsnI GGCC 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 199
BspANI GGCC 1 cut(s) 326
BspLI GGNNCC 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 144
BstBAI YACGTR 1 cut(s) 194
BstEII GGTNACC 1 cut(s) 56
BstMAI GTCTC 2 cut(s) 146, 179
BstPI GGTNACC 1 cut(s) 56
BstSCI CCNGG 2 cut(s) 81, 300
BstSLI GKGCMC 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 216
BstV2I GAAGAC 1 cut(s) 264
BsuRI GGCC 1 cut(s) 326
CviAII CATG 1 cut(s) 279
CviJI RGCY 7 cut(s) 5, 50, 227, 239, 283, 314, 326
CviKI_1 RGCY 7 cut(s) 5, 50, 227, 239, 283, 314, 326
DraIII CACNNNGTG 1 cut(s) 194
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco72I CACGTG 1 cut(s) 194
Eco91I GGTNACC 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 56
FaeI CATG 1 cut(s) 282
FaiI YATR 4 cut(s) 117, 130, 132, 280
FalI AAGNNNNNCTT 4 cut(s) 141, 173, 249, 281
FatI CATG 1 cut(s) 278
FauNDI CATATG 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 2 cut(s) 201, 337
GluI GCNGC 1 cut(s) 205
HaeIII GGCC 1 cut(s) 326
HapII CCGG 2 cut(s) 83, 302
Hin1II CATG 1 cut(s) 282
HinfI GANTC 3 cut(s) 44, 88, 154
HpaII CCGG 2 cut(s) 83, 302
HphI GGTGA 3 cut(s) 68, 117, 316
Hpy166II GTNNAC 3 cut(s) 172, 197, 334
Hpy8I GTNNAC 3 cut(s) 172, 197, 334
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 3 cut(s) 141, 197, 278
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 1 cut(s) 282
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 2 cut(s) 96, 315
Lsp1109I GCAGC 1 cut(s) 216
MaeI CTAG 2 cut(s) 201, 337
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 56
MboII GAAGA 4 cut(s) 146, 161, 266, 269
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 1 cut(s) 19
MlyI GAGTC 2 cut(s) 97, 148
MnlI CCTC 2 cut(s) 41, 62
MseI TTAA 2 cut(s) 36, 63
MspI CCGG 2 cut(s) 83, 302
MspR9I CCNGG 2 cut(s) 83, 302
NciI CCSGG 2 cut(s) 83, 302
NdeI CATATG 1 cut(s) 130
NlaIII CATG 1 cut(s) 282
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 206
PleI GAGTC 2 cut(s) 96, 148
PmaCI CACGTG 1 cut(s) 194
PmlI CACGTG 1 cut(s) 194
PpsI GAGTC 2 cut(s) 96, 148
Ppu21I YACGTR 1 cut(s) 194
PspCI CACGTG 1 cut(s) 194
PspEI GGTNACC 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 313
SaqAI TTAA 2 cut(s) 36, 63
SatI GCNGC 1 cut(s) 205
SchI GAGTC 2 cut(s) 97, 148
ScrFI CCNGG 2 cut(s) 83, 302
SduI GDGCHC 1 cut(s) 199
SetI ASST 4 cut(s) 33, 63, 196, 202
Sse9I AATT 1 cut(s) 19
SspI AATATT 1 cut(s) 289
SspMI CTAG 2 cut(s) 201, 337
StyD4I CCNGG 2 cut(s) 81, 300
TaiI ACGT 1 cut(s) 196
TaqI TCGA 2 cut(s) 8, 252
TasI AATT 1 cut(s) 19
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 2 cut(s) 36, 63
Tru9I TTAA 2 cut(s) 36, 63
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 4 cut(s) 81, 147, 162, 180
VneI GTGCAC 1 cut(s) 195
XapI RAATTY 1 cut(s) 19
XspI CTAG 2 cut(s) 201, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.