Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001050

Physical Location & Seq

Genomic Coordinates Forward (+)

29593448 .. 29595100

Gene Structure 1653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033609

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCTTCGATGCCATTGAATTTCACTAACCTCCTCAACAACGAATCAGCCATCAGTGACCTTAATGAACCACATGATTTTCCAGCAAGTCAATATCAGTCCAATGGTTCTGCTTATGCTCATTCACCATATGAAGATTGCACTTATGAAGAGACTCCTACAAATGAAATAGTGGAAGCAAAAGAGAATTTCAAGGAAGAGGAAGGTCATGCATTTGTACTTGACCATTGTTGGGTTATTTTGAGGTTTCAGCAAAAATGGATGGATGAACATCAAAAAATTGAAAGTAAGAGAAAGTTGAAGGCTCCTTCTAGTAAAGCTGCAGATTCTATCAATTTAGAAGACGATGATACAGAAGCTCCTGAACCTGCAAGCTTGAAGAGGCCAATTAGGAGAAAGGCTGCAAAGGAAGCTATCAAAAAGGCAAAATCCAAAGAACAGGTTGGTGAAAATGAGAATGAATCTTCAAAAATCCGTTCGGAGTTGGAAGAGTTGAGGGAAAGGAGATTAGAAAGTGACCACATAAAGGCAGAACAATTTAAGTTGCTACTTGCTACTGAGCAAAAGCAAGTTGCTCTTAGAGAAAAGGAAATTAAACTTCAGGCTCGAAGTGAGGATGCTAAAATAATGTCTATGGATACTAGTGTCATGCCTCCATTTCAAGCAGAGTACTTTATTAGTCTTCAAAAGGAAATCTTGGCAAAAAGAGCTAGTAGGAATGAAAATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

244

Amino Acids

28.01

Weight (kDa)

5.37

Isoelectric Point (pI)

66.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	71 - 232	8.8e-19	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001050)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29014 FvH4_5g31251 FvH4_6g30412 FvH4_7g13271
prunus_persica	Prupe.4G287300_v2.0.a1
pyrus_communis	pycom02g25100
rosa_laevigata	RLG00000014831 RLG00000016178 RLG00000018236 RLG00000023938 RLG00000029894 RLG00000033609
rosa_multiflora	Rmu_sc0000353.1_g000032 Rmu_sc0000453.1_g000001 Rmu_sc0000453.1_g000002 Rmu_sc0006593.1_g000011 Rmu_sc0008708.1_g000004 Rmu_sc0016357.1_g000001 Rmu_sc0020646.1_g000003 Rmu_sc0021515.1_g000001 Rmu_sc0022529.1_g000001 Rmu_ssc0000007.1_g000036
rosa_roxburghii	Rroxscaffold_2G00136660 Rroxscaffold_3G00259610 Rroxscaffold_4G00321120 Rroxscaffold_5G00360960 Rroxscaffold_6G00390120 Rroxscaffold_7G00185660 Rroxscaffold_7G00210600
rosa_rugosa	Rorug01G0079400 Rorug01G0079500 Rorug05G0091700
rosa_samantha	Rh1AG035100 Rh1AG206900 Rh1AG407300 Rh1AG407400 Rh1BG078000 Rh1CG021000 Rh1CG022600 Rh1CG094400 Rh1CG106900 Rh1CG191800 Rh1DG101300 Rh1DG115800 Rh2AG342500 Rh2AG565100 Rh2CG424000 Rh2CG463100 Rh2DG368700 Rh3CG298500 Rh3DG294400 Rh4CG123400 Rh5CG341800 Rh6AG163100 Rh6AG163200 Rh6DG128500 Rh7BG334100 Rh7DG175800 Rh7DG284000
rosa_wichuraiana	Rw5G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
AcsI	RAATTY	2 cut(s)	19, 187
AcuI	CTGAAG	1 cut(s)	584
AfaI	GTAC	2 cut(s)	219, 671
AfiI	CCNNNNNNNGG	2 cut(s)	232, 526
AgsI	TTSAA	8 cut(s)	19, 193, 284, 301, 379, 468, 662, 686
AhlI	ACTAGT	1 cut(s)	641
AluBI	AGCT	5 cut(s)	320, 359, 375, 413, 710
AluI	AGCT	5 cut(s)	320, 359, 375, 413, 710
Alw26I	GTCTC	1 cut(s)	146
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	2 cut(s)	320, 401
ApoI	RAATTY	2 cut(s)	19, 187
AsuHPI	GGTGA	2 cut(s)	117, 458
BaeI	ACNNNNGTAYC	2 cut(s)	630, 663
BbsI	GAAGAC	2 cut(s)	348, 674
BbvI	GCAGC	2 cut(s)	307, 388
BccI	CCATC	2 cut(s)	59, 256
BciVI	GTATCC	1 cut(s)	631
BcoDI	GTCTC	1 cut(s)	146
BcuI	ACTAGT	1 cut(s)	641
BfaI	CTAG	3 cut(s)	312, 642, 711
BfmI	CTRYAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	376
BfuI	GTATCC	1 cut(s)	631
BisI	GCNGC	2 cut(s)	321, 402
BlsI	GCNGC	2 cut(s)	322, 403
BmcAI	AGTACT	1 cut(s)	671
BmiI	GGNNCC	1 cut(s)	306
BmsI	GCATC	1 cut(s)	607
BpiI	GAAGAC	2 cut(s)	348, 674
BsaBI	GATNNNNATC	1 cut(s)	270
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 526
Bse8I	GATNNNNATC	1 cut(s)	270
BseGI	GGATG	3 cut(s)	267, 271, 622
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	232, 526
BseMII	CTCAG	1 cut(s)	549
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	307, 388
BshFI	GGCC	1 cut(s)	385
BslI	CCNNNNNNNGG	2 cut(s)	232, 526
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	385
BspANI	GGCC	1 cut(s)	385
BspCNI	CTCAG	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	376
Bst6I	CTCTTC	4 cut(s)	144, 192, 374, 483
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	2 cut(s)	558, 578
BstF5I	GGATG	3 cut(s)	267, 271, 622
BstMAI	GTCTC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 707
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	307, 388
BstV2I	GAAGAC	2 cut(s)	348, 674
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	1 cut(s)	385
BtsCI	GGATG	3 cut(s)	267, 271, 622
BtsIMutI	CAGTG	1 cut(s)	61
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	373
Csp6I	GTAC	2 cut(s)	218, 670
CviAII	CATG	3 cut(s)	74, 209, 649
CviQI	GTAC	2 cut(s)	218, 670
DdeI	CTNAG	2 cut(s)	558, 578
Eam1104I	CTCTTC	4 cut(s)	144, 192, 374, 483
EarI	CTCTTC	4 cut(s)	144, 192, 374, 483
Eco57I	CTGAAG	1 cut(s)	584
EcoT22I	ATGCAT	1 cut(s)	214
FaeI	CATG	3 cut(s)	77, 212, 652
FaiI	YATR	9 cut(s)	75, 117, 130, 132, 147, 210, 524, 635, 650
FalI	AAGNNNNNCTT	4 cut(s)	561, 593, 680, 712
FatI	CATG	3 cut(s)	73, 208, 648
FauNDI	CATATG	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	321, 402
FokI	GGATG	3 cut(s)	274, 278, 629
Fsp4HI	GCNGC	2 cut(s)	321, 402
FspBI	CTAG	3 cut(s)	312, 642, 711
GluI	GCNGC	2 cut(s)	321, 402
HaeIII	GGCC	1 cut(s)	385
Hin1II	CATG	3 cut(s)	77, 212, 652
HindIII	AAGCTT	1 cut(s)	373
HinfI	GANTC	4 cut(s)	44, 154, 326, 461
HphI	GGTGA	2 cut(s)	117, 458
Hpy188I	TCNGA	1 cut(s)	481
Hpy188III	TCNNGA	1 cut(s)	362
HpyAV	CCTTC	3 cut(s)	197, 295, 318
HpyCH4V	TGCA	5 cut(s)	141, 212, 323, 371, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 707
HpyF3I	CTNAG	2 cut(s)	558, 578
Hsp92II	CATG	3 cut(s)	77, 212, 652
LmnI	GCTCC	2 cut(s)	310, 364
LpnPI	CCDG	5 cut(s)	96, 375, 381, 425, 587
Lsp1109I	GCAGC	2 cut(s)	307, 388
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	3 cut(s)	312, 642, 711
MaeIII	GTNAC	2 cut(s)	56, 515
MboII	GAAGA	8 cut(s)	146, 161, 209, 353, 391, 456, 500, 674
MluCI	AATT	7 cut(s)	19, 187, 279, 334, 387, 536, 591
MlyI	GAGTC	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	8 cut(s)	41, 44, 193, 237, 375, 489, 607, 663
Mph1103I	ATGCAT	1 cut(s)	214
MseI	TTAA	3 cut(s)	63, 540, 594
MwoI	GCNNNNNNNGC	2 cut(s)	410, 707
NdeI	CATATG	1 cut(s)	130
NlaIII	CATG	3 cut(s)	77, 212, 652
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	2 cut(s)	56, 515
NsiI	ATGCAT	1 cut(s)	214
PfeI	GAWTC	3 cut(s)	44, 326, 461
PkrI	GCNGC	2 cut(s)	322, 403
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	306
PstI	CTGCAG	1 cut(s)	325
RsaI	GTAC	2 cut(s)	219, 671
RsaNI	GTAC	2 cut(s)	218, 670
SaqAI	TTAA	3 cut(s)	63, 540, 594
SatI	GCNGC	2 cut(s)	321, 402
ScaI	AGTACT	1 cut(s)	671
SchI	GAGTC	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	607
SfcI	CTRYAG	1 cut(s)	321
SpeI	ACTAGT	1 cut(s)	641
Sse9I	AATT	7 cut(s)	19, 187, 279, 334, 387, 536, 591
SspMI	CTAG	3 cut(s)	312, 642, 711
TaqI	TCGA	2 cut(s)	8, 607
TasI	AATT	7 cut(s)	19, 187, 279, 334, 387, 536, 591
TatI	WGTACW	2 cut(s)	217, 669
TfiI	GAWTC	3 cut(s)	44, 326, 461
Tru1I	TTAA	3 cut(s)	63, 540, 594
Tru9I	TTAA	3 cut(s)	63, 540, 594
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	2 cut(s)	56, 515
TseI	GCWGC	2 cut(s)	320, 401
Tsp45I	GTSAC	2 cut(s)	56, 515
TspDTI	ATGAA	6 cut(s)	81, 147, 162, 180, 282, 474
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	1 cut(s)	61
XapI	RAATTY	2 cut(s)	19, 187
XspI	CTAG	3 cut(s)	312, 642, 711
ZrmI	AGTACT	1 cut(s)	671
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.