Rh7DG175800

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001050
Physical Location & Seq
Forward (+)
16090179 .. 16093270
3092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG175800.1

Sequence Viewer

Length: 1086 bp
ATGAAAACATTCCCAGTTCCTAAAGTGTTGAAGGCTTCGACGCCATTGAATTTCACTAACCTCCTCAACAATAAATCAGCCTTTAATGACCTCAACAAACCACATTTGACATACGATTTCCCGGCGAGTCAGTATCATTCACCCTATGAAGATTGCACTTATGAAGAGACACCTATTAGTGAAGTTTACACTAATGAAGAGACGCCATGTGCACCTAATAGCAAGAAAGCACAAAGACAAGCTCAAAGACAAGCCAACTTCACAATCGAAGAAGACAAACTTCTTGTATTTGCATGGCTGAATATTGGCTTAGACCCAGTGAAAGGAGCCGATCAAAAGAAGAAACAATTCTGGAAAAGAATTACTGATTACTTTGAAAAACACAAGAAGTGGTCTGCTGAACGGAGTGAAAAATCATTAACAAACCGTTGGTCAACAATCAGCAGCACTGTGAGTAAGTTTTGTGGACATTATGCTCAAATTGAACACTTAAGGAAAAGTGGTTATACGGAACAAGATAAGATAGTGGAAGCAAAAGAGAATTTCAAGCTAGAGGAAGGTCATGCATTTGTACTTGACCATTGTTGGGTTGTTTTGAGGTTTCAGCAAAAATGGATGGATGAACATCAAAAAATCGAAAGTAAGAGAAAGTGGAAGGCTCCTTCTAGTAAGGCTGCATATTCTATCAATTTAGAAGACGATGATACGAAAGCTCCTGAACCTGCAAGCTTGAAGAGACCAATTGGGAGAAAGGCTGCAAAGGAAGCTATCAAAAAGGCAAAATCCAAAGAACAGGTTGGTGAAAATGAGAATGAATCTACAAAAACCCGTTCTGAGTTGGAAGAGTTGAGGGCAAGGATATTAGAAAGTGACCGTATAAAGGCAGAACAATTTAAGTTCCTGCTTGCTACAGAGAAAAAGCAAGTTGCTCTTAGAGAAAAGGAAATTGAACTTCAGACCCGAAGTGAGGATGCAAAAATAATGTCTATGGATACTAGTGTCATGCCTCCATTTCAAGCAGAATATTTTATCAGTCTTCAGAAGGAAATCTTGGCAAAAAGAGCTAGTAGGAATGAAAATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

361

Amino Acids

42.0

Weight (kDa)

9.0

Isoelectric Point (pI)

57.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 189 - 350 3.5e-18 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 730
AcsI RAATTY 2 cut(s) 49, 541
AcuI CTGAAG 2 cut(s) 938, 1022
AcyI GRCGYC 2 cut(s) 41, 203
AfaI GTAC 1 cut(s) 573
AfiI CCNNNNNNNGG 4 cut(s) 323, 586, 880, 967
AflII CTTAAG 1 cut(s) 490
AgsI TTSAA 8 cut(s) 31, 49, 377, 485, 547, 733, 950, 1016
AhlI ACTAGT 1 cut(s) 995
AjuI GAANNNNNNNTTGG 2 cut(s) 1034, 1066
AluBI AGCT 6 cut(s) 242, 550, 713, 729, 767, 1064
AluI AGCT 6 cut(s) 242, 550, 713, 729, 767, 1064
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 3 cut(s) 161, 194, 730
Alw44I GTGCAC 1 cut(s) 210
ApaLI GTGCAC 1 cut(s) 210
ApeKI GCWGC 3 cut(s) 444, 674, 755
ApoI RAATTY 2 cut(s) 49, 541
ArsI GACNNNNNNTTYG 4 cut(s) 416, 448, 968, 1000
Asp700I GAANNNNTTC 2 cut(s) 8, 347
AsuC2I CCSGG 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 132, 812
BaeGI GKGCMC 1 cut(s) 214
BaeI ACNNNNGTAYC 2 cut(s) 984, 1017
BbsI GAAGAC 3 cut(s) 279, 702, 1028
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 3 cut(s) 456, 661, 742
BccI CCATC 1 cut(s) 610
BciVI GTATCC 1 cut(s) 985
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 3 cut(s) 161, 194, 730
BcuI ACTAGT 1 cut(s) 995
BfaI CTAG 4 cut(s) 551, 666, 996, 1065
BfmI CTRYAG 1 cut(s) 909
BfrI CTTAAG 1 cut(s) 490
BfuAI ACCTGC 1 cut(s) 730
BfuI GTATCC 1 cut(s) 985
BisI GCNGC 3 cut(s) 445, 675, 756
BlsI GCNGC 3 cut(s) 446, 676, 757
Bme1390I CCNGG 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 328, 660
BmrFI CCNGG 1 cut(s) 122
BmrI ACTGGG 2 cut(s) 8, 311
BmsI GCATC 1 cut(s) 961
BmuI ACTGGG 2 cut(s) 8, 311
BpiI GAAGAC 3 cut(s) 279, 702, 1028
BpuMI CCSGG 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 624
BsaHI GRCGYC 2 cut(s) 41, 203
BsaI GGTCTC 1 cut(s) 730
BsaXI ACNNNNNCTCC 2 cut(s) 697, 727
Bsc4I CCNNNNNNNGG 4 cut(s) 323, 586, 880, 967
Bse1I ACTGG 2 cut(s) 14, 317
Bse8I GATNNNNATC 1 cut(s) 624
BseGI GGATG 3 cut(s) 621, 625, 976
BseJI GATNNNNATC 1 cut(s) 624
BseLI CCNNNNNNNGG 4 cut(s) 323, 586, 880, 967
BseMII CTCAG 1 cut(s) 825
BseNI ACTGG 2 cut(s) 14, 317
BseRI GAGGAG 1 cut(s) 53
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 3 cut(s) 456, 661, 742
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 122
BslI CCNNNNNNNGG 4 cut(s) 323, 586, 880, 967
BsmAI GTCTC 3 cut(s) 161, 194, 730
BsmBI CGTCTC 1 cut(s) 194
Bso31I GGTCTC 1 cut(s) 730
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 331
BspCNI CTCAG 1 cut(s) 826
BspLI GGNNCC 2 cut(s) 328, 660
BspMI ACCTGC 1 cut(s) 730
BspTI CTTAAG 1 cut(s) 490
BspTNI GGTCTC 1 cut(s) 730
BsrI ACTGG 2 cut(s) 14, 317
BssMI GATC 1 cut(s) 331
BssNI GRCGYC 2 cut(s) 41, 203
Bst4CI ACNGT 3 cut(s) 428, 451, 875
Bst6I CTCTTC 4 cut(s) 159, 192, 728, 837
BstACI GRCGYC 2 cut(s) 41, 203
BstAFI CTTAAG 1 cut(s) 490
BstC8I GCNNGC 2 cut(s) 727, 906
BstDEI CTNAG 3 cut(s) 310, 834, 932
BstF5I GGATG 3 cut(s) 621, 625, 976
BstKTI GATC 1 cut(s) 334
BstMAI GTCTC 3 cut(s) 161, 194, 730
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 2 cut(s) 764, 1061
BstSCI CCNGG 1 cut(s) 120
BstSFI CTRYAG 1 cut(s) 909
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 3 cut(s) 456, 661, 742
BstV2I GAAGAC 3 cut(s) 279, 702, 1028
BsuI GTATCC 1 cut(s) 985
BtsCI GGATG 3 cut(s) 621, 625, 976
BtsIMutI CAGTG 2 cut(s) 324, 447
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 2 cut(s) 727, 906
CseI GACGC 2 cut(s) 49, 211
Csp6I GTAC 1 cut(s) 572
CviAII CATG 4 cut(s) 207, 294, 563, 1003
CviQI GTAC 1 cut(s) 572
DdeI CTNAG 3 cut(s) 310, 834, 932
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
Eam1104I CTCTTC 4 cut(s) 159, 192, 728, 837
EarI CTCTTC 4 cut(s) 159, 192, 728, 837
Eco31I GGTCTC 1 cut(s) 730
Eco57I CTGAAG 2 cut(s) 938, 1022
EcoT22I ATGCAT 1 cut(s) 568
Esp3I CGTCTC 1 cut(s) 194
FaeI CATG 4 cut(s) 210, 297, 566, 1006
FalI AAGNNNNNCTT 6 cut(s) 264, 296, 915, 947, 1034, 1066
FatI CATG 4 cut(s) 206, 293, 562, 1002
Fnu4HI GCNGC 3 cut(s) 445, 675, 756
FokI GGATG 3 cut(s) 628, 632, 983
Fsp4HI GCNGC 3 cut(s) 445, 675, 756
FspBI CTAG 4 cut(s) 551, 666, 996, 1065
GluI GCNGC 3 cut(s) 445, 675, 756
HapII CCGG 1 cut(s) 122
HgaI GACGC 2 cut(s) 49, 211
Hin1I GRCGYC 2 cut(s) 41, 203
Hin1II CATG 4 cut(s) 210, 297, 566, 1006
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HindIII AAGCTT 1 cut(s) 727
HinfI GANTC 2 cut(s) 127, 815
HpaII CCGG 1 cut(s) 122
HphI GGTGA 2 cut(s) 132, 812
Hpy166II GTNNAC 4 cut(s) 187, 212, 435, 467
Hpy188I TCNGA 3 cut(s) 835, 957, 1041
Hpy188III TCNNGA 2 cut(s) 352, 716
Hpy8I GTNNAC 4 cut(s) 187, 212, 435, 467
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 5 cut(s) 25, 551, 649, 672, 1036
HpyCH4III ACNGT 3 cut(s) 428, 451, 875
HpyCH4V TGCA 8 cut(s) 156, 212, 293, 566, 677, 725, 758, 974
HpyF10VI GCNNNNNNNGC 2 cut(s) 764, 1061
HpyF3I CTNAG 3 cut(s) 310, 834, 932
Hsp92I GRCGYC 2 cut(s) 41, 203
Hsp92II CATG 4 cut(s) 210, 297, 566, 1006
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 3 cut(s) 326, 664, 718
LpnPI CCDG 8 cut(s) 27, 135, 330, 337, 729, 735, 779, 914
Lsp1109I GCAGC 3 cut(s) 456, 661, 742
LweI GCATC 1 cut(s) 961
MaeI CTAG 4 cut(s) 551, 666, 996, 1065
MaeIII GTNAC 1 cut(s) 869
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MfeI CAATTG 1 cut(s) 741
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 9 cut(s) 49, 347, 360, 480, 541, 688, 741, 890, 945
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 819
MnlI CCTC 8 cut(s) 71, 74, 101, 547, 591, 843, 961, 1017
Mph1103I ATGCAT 1 cut(s) 568
MroXI GAANNNNTTC 2 cut(s) 8, 347
MseI TTAA 4 cut(s) 84, 419, 491, 894
MspCI CTTAAG 1 cut(s) 490
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 122
MunI CAATTG 1 cut(s) 741
MwoI GCNNNNNNNGC 2 cut(s) 764, 1061
NciI CCSGG 1 cut(s) 122
NdeII GATC 1 cut(s) 331
NlaIII CATG 4 cut(s) 210, 297, 566, 1006
NlaIV GGNNCC 2 cut(s) 328, 660
NmuCI GTSAC 1 cut(s) 869
NsiI ATGCAT 1 cut(s) 568
PdmI GAANNNNTTC 2 cut(s) 8, 347
PfeI GAWTC 1 cut(s) 815
PkrI GCNGC 3 cut(s) 446, 676, 757
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 328, 660
RsaI GTAC 1 cut(s) 573
RsaNI GTAC 1 cut(s) 572
SaqAI TTAA 4 cut(s) 84, 419, 491, 894
SatI GCNGC 3 cut(s) 445, 675, 756
Sau3AI GATC 1 cut(s) 331
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 1 cut(s) 214
SfaNI GCATC 1 cut(s) 961
SfcI CTRYAG 1 cut(s) 909
SmlI CTYRAG 1 cut(s) 490
SmoI CTYRAG 1 cut(s) 490
SpeI ACTAGT 1 cut(s) 995
Sse9I AATT 9 cut(s) 49, 347, 360, 480, 541, 688, 741, 890, 945
SspI AATATT 2 cut(s) 304, 1025
SspMI CTAG 4 cut(s) 551, 666, 996, 1065
StyD4I CCNGG 1 cut(s) 120
TaaI ACNGT 3 cut(s) 428, 451, 875
TaqI TCGA 3 cut(s) 38, 267, 636
TasI AATT 9 cut(s) 49, 347, 360, 480, 541, 688, 741, 890, 945
TatI WGTACW 1 cut(s) 571
TfiI GAWTC 1 cut(s) 815
Tru1I TTAA 4 cut(s) 84, 419, 491, 894
Tru9I TTAA 4 cut(s) 84, 419, 491, 894
TscAI CASTG 2 cut(s) 324, 454
TseFI GTSAC 1 cut(s) 869
TseI GCWGC 3 cut(s) 444, 674, 755
Tsp45I GTSAC 1 cut(s) 869
TspDTI ATGAA 6 cut(s) 17, 162, 177, 210, 636, 828
TspGWI ACGGA 2 cut(s) 418, 524
TspRI CASTG 2 cut(s) 324, 454
Vha464I CTTAAG 1 cut(s) 490
VneI GTGCAC 1 cut(s) 210
XapI RAATTY 2 cut(s) 49, 541
XmnI GAANNNNTTC 2 cut(s) 8, 347
XspI CTAG 4 cut(s) 551, 666, 996, 1065
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.