Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001050

Physical Location & Seq

Genomic Coordinates Reverse (-)

11937207 .. 11938601

Gene Structure 1395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13271.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGATTTGACACCATTGAATTTCACTAACCTCCTCAACAGTAGCAAATCAGCCCTTGATGATCTCAATGAACCATTGCATGCATACGATTTTCCATTGAGCCAGTGTCATCTCAATGATTCTCCCTATGAAGAGATATGTAGAACTGAATTTTGTGCTACTGAAGAGCAGCAGCCACCTTGTGAACCTAGCAGCAAGAAAGCTGCTGCACCACGACAAGCTAACTTCTCAATTGAGGAAGACAAACTTCTTGTATCTGCATGGCTCAATATCAGCTTGGACCCTGTCAAAGGAACTGGCCAAAAGAGACAGCAATTCTGGAAAAGAATTACAAAATACTTTGAAGACAACAAGACGTGGACTGGTGAACGGTCGACAAAATCACTCATTAATCGTTGGTCAACAATCAGCAGCAGTGTGAGCAAGTTTTGTGGATATTATTCTTCAATTGAACACTTGAGGAGAAGTGGTTACACAGAACAAGATAAGATAGTGGAGGCAAAAGAGACTTACAAGAAAGAAGAACGTCATGCATTTGTACTTGATCATTGTTGGGTTGTTTTGAGGTTCCAGCAAAAATGGATGGATGAACATCAAAATCAAGAATCTAAGAGACAACAACAGAAGGTTTGTTCTAGTAAGAATCATGATTCAATCAATTTAGAAGATGATTTAGAAGCTCCTGAACCTGCAAGCTTGAAGAGGCCAATTGGGAGAAAGGCTGCAAAAGAAGCAAACAAGAAAGCAAAGTCCAACGATGAAGGTGGCGCAAATGAGAAGGAATCTAAAATCCGTTCTGAGTTGGAAGAGTTCAGAGCAAAGCGATTAGAAAGTGATCGCATAAAGGCTGAACAATTTAAGTTGCTACTTGATACTCAGAAAAAGGAAGTTGCTCTTAAAGAGAAGGAACTTGAGCTTCAGGCTCGGAGTGAGGAGATTGGAATAATGTCTATGGATACTAGTAAGATGCTTCCTCATCAAGTGGAATATTTTATCGGTCTTCAGAAAGAAATCTTGGCAAAAAGAGCTGCTAATGGAAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

349

Amino Acids

40.24

Weight (kDa)

6.5

Isoelectric Point (pI)

61.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	178 - 338	1.2e-16	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001050)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29014 FvH4_5g31251 FvH4_6g30412 FvH4_7g13271
prunus_persica	Prupe.4G287300_v2.0.a1
pyrus_communis	pycom02g25100
rosa_laevigata	RLG00000014831 RLG00000016178 RLG00000018236 RLG00000023938 RLG00000029894 RLG00000033609
rosa_multiflora	Rmu_sc0000353.1_g000032 Rmu_sc0000453.1_g000001 Rmu_sc0000453.1_g000002 Rmu_sc0006593.1_g000011 Rmu_sc0008708.1_g000004 Rmu_sc0016357.1_g000001 Rmu_sc0020646.1_g000003 Rmu_sc0021515.1_g000001 Rmu_sc0022529.1_g000001 Rmu_ssc0000007.1_g000036
rosa_roxburghii	Rroxscaffold_2G00136660 Rroxscaffold_3G00259610 Rroxscaffold_4G00321120 Rroxscaffold_5G00360960 Rroxscaffold_6G00390120 Rroxscaffold_7G00185660 Rroxscaffold_7G00210600
rosa_rugosa	Rorug01G0079400 Rorug01G0079500 Rorug05G0091700
rosa_samantha	Rh1AG035100 Rh1AG206900 Rh1AG407300 Rh1AG407400 Rh1BG078000 Rh1CG021000 Rh1CG022600 Rh1CG094400 Rh1CG106900 Rh1CG191800 Rh1DG101300 Rh1DG115800 Rh2AG342500 Rh2AG565100 Rh2CG424000 Rh2CG463100 Rh2DG368700 Rh3CG298500 Rh3DG294400 Rh4CG123400 Rh5CG341800 Rh6AG163100 Rh6AG163200 Rh6DG128500 Rh7BG334100 Rh7DG175800 Rh7DG284000
rosa_wichuraiana	Rw5G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	697
AccI	GTMKAC	1 cut(s)	374
AcoI	YGGCCR	1 cut(s)	298
AcsI	RAATTY	2 cut(s)	19, 149
AcuI	CTGAAG	3 cut(s)	183, 902, 986
AdeI	CACNNNGTG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	540
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	6 cut(s)	19, 344, 447, 452, 654, 700
AhlI	ACTAGT	1 cut(s)	959
AjiI	CACGTC	1 cut(s)	357
AjuI	GAANNNNNNNTTGG	2 cut(s)	998, 1030
AluBI	AGCT	7 cut(s)	203, 221, 276, 680, 696, 916, 1028
AluI	AGCT	7 cut(s)	203, 221, 276, 680, 696, 916, 1028
Alw26I	GTCTC	3 cut(s)	301, 500, 607
AoxI	GGCC	2 cut(s)	298, 704
ApeKI	GCWGC	8 cut(s)	169, 172, 192, 203, 206, 411, 722, 1028
ApoI	RAATTY	2 cut(s)	19, 149
AseI	ATTAAT	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	770
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	280
BalI	TGGCCA	1 cut(s)	300
BbsI	GAAGAC	3 cut(s)	246, 351, 992
BbvI	GCAGC	8 cut(s)	181, 184, 190, 193, 204, 423, 709, 1015
BccI	CCATC	1 cut(s)	577
BciVI	GTATCC	1 cut(s)	949
BclI	TGATCA	1 cut(s)	544
BcoDI	GTCTC	3 cut(s)	301, 500, 607
BcuI	ACTAGT	1 cut(s)	959
BfaI	CTAG	3 cut(s)	189, 636, 960
BfuAI	ACCTGC	1 cut(s)	697
BfuI	GTATCC	1 cut(s)	949
BisI	GCNGC	8 cut(s)	170, 173, 193, 204, 207, 412, 723, 1029
BlsI	GCNGC	8 cut(s)	171, 174, 194, 205, 208, 413, 724, 1030
Bme18I	GGWCC	1 cut(s)	280
BmgBI	CACGTC	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	2 cut(s)	282, 569
BmsI	GCATC	1 cut(s)	957
BpiI	GAAGAC	3 cut(s)	246, 351, 992
BpuEI	CTTGAG	2 cut(s)	478, 932
BsaBI	GATNNNNATC	1 cut(s)	591
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	3 cut(s)	103, 301, 367
Bse3DI	GCAATG	1 cut(s)	74
Bse8I	GATNNNNATC	1 cut(s)	591
BseGI	GGATG	2 cut(s)	588, 592
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	74
BseMII	CTCAG	2 cut(s)	789, 890
BseNI	ACTGG	3 cut(s)	103, 301, 367
BseRI	GAGGAG	3 cut(s)	23, 475, 947
BseXI	GCAGC	8 cut(s)	181, 184, 190, 193, 204, 423, 709, 1015
BsgI	GTGCAG	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	374
BshFI	GGCC	2 cut(s)	300, 706
BsiEI	CGRYCG	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	3 cut(s)	301, 500, 607
BsnI	GGCC	2 cut(s)	300, 706
Bsp143I	GATC	3 cut(s)	61, 544, 835
BspANI	GGCC	2 cut(s)	300, 706
BspCNI	CTCAG	2 cut(s)	790, 889
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	2 cut(s)	282, 569
BspMI	ACCTGC	1 cut(s)	697
BspQI	GCTCTTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	74
BsrI	ACTGG	3 cut(s)	103, 301, 367
BssMI	GATC	3 cut(s)	61, 544, 835
Bst4CI	ACNGT	2 cut(s)	41, 372
Bst6I	CTCTTC	4 cut(s)	126, 159, 695, 801
BstC8I	GCNNGC	2 cut(s)	81, 694
BstDEI	CTNAG	3 cut(s)	609, 798, 876
BstENI	CCTNNNNNAGG	1 cut(s)	288
BstF5I	GGATG	2 cut(s)	588, 592
BstHHI	GCGC	1 cut(s)	770
BstKTI	GATC	3 cut(s)	64, 547, 838
BstMAI	GTCTC	3 cut(s)	301, 500, 607
BstMBI	GATC	3 cut(s)	61, 544, 835
BstMCI	CGRYCG	1 cut(s)	374
BstMWI	GCNNNNNNNGC	3 cut(s)	420, 731, 1025
BstNSI	RCATGY	1 cut(s)	83
BstV1I	GCAGC	8 cut(s)	181, 184, 190, 193, 204, 423, 709, 1015
BstV2I	GAAGAC	3 cut(s)	246, 351, 992
BsuI	GTATCC	1 cut(s)	949
BsuRI	GGCC	2 cut(s)	300, 706
BtrI	CACGTC	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	588, 592
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	2 cut(s)	110, 421
BveI	ACCTGC	1 cut(s)	697
Cac8I	GCNNGC	2 cut(s)	81, 694
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	1 cut(s)	770
Cfr13I	GGNCC	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	539
CspCI	CAANNNNNGTGG	2 cut(s)	412, 447
CviAII	CATG	4 cut(s)	80, 261, 530, 647
CviQI	GTAC	1 cut(s)	539
DdeI	CTNAG	3 cut(s)	609, 798, 876
DpnI	GATC	3 cut(s)	63, 546, 837
DpnII	GATC	3 cut(s)	61, 544, 835
DraIII	CACNNNGTG	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	298
Eam1104I	CTCTTC	4 cut(s)	126, 159, 695, 801
EarI	CTCTTC	4 cut(s)	126, 159, 695, 801
Eco47I	GGWCC	1 cut(s)	280
Eco57I	CTGAAG	3 cut(s)	183, 902, 986
EcoNI	CCTNNNNNAGG	1 cut(s)	288
EcoT22I	ATGCAT	2 cut(s)	85, 535
FaeI	CATG	4 cut(s)	83, 264, 533, 650
FaiI	YATR	9 cut(s)	81, 85, 129, 139, 262, 531, 648, 842, 953
FalI	AAGNNNNNCTT	4 cut(s)	231, 263, 879, 911
FatI	CATG	4 cut(s)	79, 260, 529, 646
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	8 cut(s)	170, 173, 193, 204, 207, 412, 723, 1029
FokI	GGATG	2 cut(s)	595, 599
Fsp4HI	GCNGC	8 cut(s)	170, 173, 193, 204, 207, 412, 723, 1029
FspBI	CTAG	3 cut(s)	189, 636, 960
GlaI	GCGC	1 cut(s)	769
GluI	GCNGC	8 cut(s)	170, 173, 193, 204, 207, 412, 723, 1029
HaeIII	GGCC	2 cut(s)	300, 706
HhaI	GCGC	1 cut(s)	770
Hin1II	CATG	4 cut(s)	83, 264, 533, 650
Hin6I	GCGC	1 cut(s)	768
HinP1I	GCGC	1 cut(s)	768
HincII	GTYRAC	2 cut(s)	375, 402
HindII	GTYRAC	2 cut(s)	375, 402
HindIII	AAGCTT	1 cut(s)	694
HinfI	GANTC	5 cut(s)	119, 605, 643, 650, 782
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	5 cut(s)	185, 360, 368, 375, 402
Hpy188I	TCNGA	5 cut(s)	799, 815, 879, 927, 1005
Hpy188III	TCNNGA	4 cut(s)	319, 602, 647, 683
Hpy8I	GTNNAC	5 cut(s)	185, 360, 368, 375, 402
HpyAV	CCTTC	4 cut(s)	619, 755, 772, 898
HpyCH4III	ACNGT	2 cut(s)	41, 372
HpyCH4IV	ACGT	2 cut(s)	356, 526
HpyCH4V	TGCA	7 cut(s)	79, 83, 209, 260, 533, 692, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	420, 731, 1025
HpyF3I	CTNAG	3 cut(s)	609, 798, 876
HpySE526I	ACGT	2 cut(s)	356, 526
Hsp92II	CATG	4 cut(s)	83, 264, 533, 650
HspAI	GCGC	1 cut(s)	768
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	61, 544, 835
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	685
LpnPI	CCDG	9 cut(s)	116, 282, 297, 304, 348, 584, 696, 702, 905
Lsp1109I	GCAGC	8 cut(s)	181, 184, 190, 193, 204, 423, 709, 1015
LweI	GCATC	1 cut(s)	957
MaeI	CTAG	3 cut(s)	189, 636, 960
MaeII	ACGT	2 cut(s)	356, 526
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	3 cut(s)	63, 546, 837
MboI	GATC	3 cut(s)	61, 544, 835
MfeI	CAATTG	3 cut(s)	231, 447, 708
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	9 cut(s)	19, 149, 231, 314, 327, 447, 658, 708, 854
MluNI	TGGCCA	1 cut(s)	300
MmeI	TCCRAC	2 cut(s)	777, 783
MnlI	CCTC	9 cut(s)	41, 44, 229, 453, 490, 558, 696, 925, 984
Mox20I	TGGCCA	1 cut(s)	300
Mph1103I	ATGCAT	2 cut(s)	85, 535
MscI	TGGCCA	1 cut(s)	300
MseI	TTAA	3 cut(s)	390, 858, 897
MslI	CAYNNNNRTG	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	300
MunI	CAATTG	3 cut(s)	231, 447, 708
MwoI	GCNNNNNNNGC	3 cut(s)	420, 731, 1025
NdeII	GATC	3 cut(s)	61, 544, 835
NlaIII	CATG	4 cut(s)	83, 264, 533, 650
NlaIV	GGNNCC	2 cut(s)	282, 569
NsiI	ATGCAT	2 cut(s)	85, 535
NspI	RCATGY	1 cut(s)	83
PaeI	GCATGC	1 cut(s)	83
PagI	TCATGA	1 cut(s)	646
PciSI	GCTCTTC	1 cut(s)	159
PfeI	GAWTC	5 cut(s)	119, 605, 643, 650, 782
PflFI	GACNNNGTC	1 cut(s)	284
PkrI	GCNGC	8 cut(s)	171, 174, 194, 205, 208, 413, 724, 1030
PshBI	ATTAAT	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	282, 569
PspPI	GGNCC	1 cut(s)	280
PsyI	GACNNNGTC	1 cut(s)	284
RsaI	GTAC	1 cut(s)	540
RsaNI	GTAC	1 cut(s)	539
RseI	CAYNNNNRTG	1 cut(s)	114
SalI	GTCGAC	1 cut(s)	373
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	3 cut(s)	390, 858, 897
SatI	GCNGC	8 cut(s)	170, 173, 193, 204, 207, 412, 723, 1029
Sau3AI	GATC	3 cut(s)	61, 544, 835
Sau96I	GGNCC	1 cut(s)	280
SfaNI	GCATC	1 cut(s)	957
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	2 cut(s)	457, 911
SmoI	CTYRAG	2 cut(s)	457, 911
SpeI	ACTAGT	1 cut(s)	959
SphI	GCATGC	1 cut(s)	83
Sse9I	AATT	9 cut(s)	19, 149, 231, 314, 327, 447, 658, 708, 854
SspI	AATATT	1 cut(s)	989
SspMI	CTAG	3 cut(s)	189, 636, 960
TaaI	ACNGT	2 cut(s)	41, 372
TaiI	ACGT	2 cut(s)	359, 529
TaqI	TCGA	1 cut(s)	374
TaqII	GACCGA	1 cut(s)	986
TasI	AATT	9 cut(s)	19, 149, 231, 314, 327, 447, 658, 708, 854
TatI	WGTACW	1 cut(s)	538
TfiI	GAWTC	5 cut(s)	119, 605, 643, 650, 782
Tru1I	TTAA	3 cut(s)	390, 858, 897
Tru9I	TTAA	3 cut(s)	390, 858, 897
TscAI	CASTG	2 cut(s)	110, 421
TseI	GCWGC	8 cut(s)	169, 172, 192, 203, 206, 411, 722, 1028
TspDTI	ATGAA	4 cut(s)	84, 144, 603, 774
TspGWI	ACGGA	1 cut(s)	782
TspRI	CASTG	2 cut(s)	110, 421
Tth111I	GACNNNGTC	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	280
VspI	ATTAAT	1 cut(s)	390
XagI	CCTNNNNNAGG	1 cut(s)	288
XapI	RAATTY	2 cut(s)	19, 149
XceI	RCATGY	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	374
XspI	CTAG	3 cut(s)	189, 636, 960
Zsp2I	ATGCAT	2 cut(s)	85, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.