Rh1AG035100

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001050
Physical Location & Seq
Reverse (-)
6135554 .. 6137392
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG035100.1

Sequence Viewer

Length: 195 bp
ATGACCCAAAATGTTTCAACTTCGACTGAAGCTCAACCAAGAAAGAAGAAGGTAGCGCAGATGGCTTCGACGCCATTGAATTTCACTGATCTCCTCAACAATGAATCAACCCTCAATGACCTCAATGAACCACATTTGACATACGATTTCCCGGCGAGCCGTTGTAAACTAGCCGTTATTTTAAACTTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

64

Amino Acids

7.18

Weight (kDa)

6.53

Isoelectric Point (pI)

30.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 71
AgsI TTSAA 2 cut(s) 18, 79
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
ApoI RAATTY 1 cut(s) 79
AspLEI GCGC 1 cut(s) 58
AsuC2I CCSGG 1 cut(s) 152
BccI CCATC 1 cut(s) 55
BceAI ACGGC 2 cut(s) 144, 158
BcnI CCSGG 1 cut(s) 152
BfaI CTAG 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 152
Bsp143I GATC 1 cut(s) 88
BssMI GATC 1 cut(s) 88
BssNI GRCGYC 1 cut(s) 71
BstACI GRCGYC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 157
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 1 cut(s) 58
CseI GACGC 1 cut(s) 79
CviJI RGCY 4 cut(s) 32, 65, 159, 173
CviKI_1 RGCY 4 cut(s) 32, 65, 159, 173
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DraI TTTAAA 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 48
FaiI YATR 1 cut(s) 142
FspBI CTAG 1 cut(s) 170
GlaI GCGC 1 cut(s) 57
HapII CCGG 1 cut(s) 152
HgaI GACGC 1 cut(s) 79
HhaI GCGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 71
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 1 cut(s) 104
HpaII CCGG 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
Hsp92I GRCGYC 1 cut(s) 71
HspAI GCGC 1 cut(s) 56
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 1 cut(s) 165
MaeI CTAG 1 cut(s) 170
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 1 cut(s) 58
MluCI AATT 1 cut(s) 79
MnlI CCTC 3 cut(s) 104, 122, 131
MseI TTAA 2 cut(s) 182, 193
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 62
NciI CCSGG 1 cut(s) 152
NdeII GATC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 104
SaqAI TTAA 2 cut(s) 182, 193
Sau3AI GATC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 152
SetI ASST 3 cut(s) 34, 54, 123
SgeI CNNG 5 cut(s) 51, 163, 164, 168, 182
Sse9I AATT 1 cut(s) 79
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 150
TaqI TCGA 2 cut(s) 23, 68
TasI AATT 1 cut(s) 79
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 2 cut(s) 182, 193
Tru9I TTAA 2 cut(s) 182, 193
TscAI CASTG 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 117, 141
TspRI CASTG 1 cut(s) 91
XapI RAATTY 1 cut(s) 79
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.