Rmu_sc0008708.1_g000004

No apical meristem-associated C-terminal domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008708.1
Physical Location & Seq
Reverse (-)
27695 .. 28201
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008708.1_g000004.1.cds

Sequence Viewer

Length: 507 bp
atggactcgacgtcattgaatttcactgacctcatcaacagcgaaacaaaccgcaatgaacctcctctgacatatgatttcccgtcgagtcaatatcacaccaatggttctacttgtgctcctacaccatttgaagattgcacttatgaagagacacttactaatgaagattgctctaataaagagacaacttgtgcacctggcagcaagaaagcacaaagacaagctaacttcacggtcgaagaagacaaacttcttatatctgcatggctcaatgttagcatagatcaagtgaaaggagctgatcaaaagaaaaaacaattttggaaaagaattaccaaatactttgaagataacaagaagtggtctggtgaacggagtgaaaagtcattaacgaaccgttggtcaaaaatcaataccactgtgagtaagttttatgggcatcattctcaaattgaacacttacagaaaagtgattacacggaacaagataaggtaagcagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

168

Amino Acids

19.38

Weight (kDa)

5.83

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
AciI CCGC 1 cut(s) 52
AcsI RAATTY 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 11
AgsI TTSAA 4 cut(s) 19, 134, 350, 458
AhdI GACNNNNNGTC 1 cut(s) 10
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 3 cut(s) 227, 302, 504
AluI AGCT 3 cut(s) 227, 302, 504
Alw21I GWGCWC 2 cut(s) 121, 199
Alw26I GTCTC 2 cut(s) 146, 179
Alw44I GTGCAC 1 cut(s) 195
ApaLI GTGCAC 1 cut(s) 195
ApeKI GCWGC 2 cut(s) 204, 501
ApoI RAATTY 1 cut(s) 19
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AsuHPI GGTGA 1 cut(s) 383
BaeGI GKGCMC 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 2 cut(s) 121, 199
BbvI GCAGC 1 cut(s) 216
BciT130I CCWGG 1 cut(s) 201
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 2 cut(s) 146, 179
BisI GCNGC 2 cut(s) 205, 502
BlsI GCNGC 2 cut(s) 206, 503
Bme1390I CCNGG 1 cut(s) 201
BmeRI GACNNNNNGTC 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 54
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 1 cut(s) 216
Bsh1285I CGRYCG 1 cut(s) 240
BsiEI CGRYCG 1 cut(s) 240
BsiHKAI GWGCWC 2 cut(s) 121, 199
BsmAI GTCTC 2 cut(s) 146, 179
Bsp1286I GDGCHC 2 cut(s) 121, 199
Bsp143I GATC 2 cut(s) 286, 304
BspACI CCGC 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 61
BssMI GATC 2 cut(s) 286, 304
BssNI GRCGYC 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 3 cut(s) 238, 401, 424
Bst6I CTCTTC 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 11
BstKTI GATC 2 cut(s) 289, 307
BstMAI GTCTC 2 cut(s) 146, 179
BstMBI GATC 2 cut(s) 286, 304
BstMCI CGRYCG 1 cut(s) 240
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 216
BstV2I GAAGAC 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 24, 420
CviAII CATG 1 cut(s) 267
CviJI RGCY 4 cut(s) 227, 271, 302, 504
CviKI_1 RGCY 4 cut(s) 227, 271, 302, 504
DpnI GATC 2 cut(s) 288, 306
DpnII GATC 2 cut(s) 286, 304
DriI GACNNNNNGTC 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 144
Eam1105I GACNNNNNGTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 199
FaeI CATG 1 cut(s) 270
FaiI YATR 7 cut(s) 73, 75, 147, 260, 268, 284, 438
FalI AAGNNNNNCTT 4 cut(s) 141, 173, 237, 269
FatI CATG 1 cut(s) 266
FauNDI CATATG 1 cut(s) 73
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 205, 502
Fsp4HI GCNGC 2 cut(s) 205, 502
GluI GCNGC 2 cut(s) 205, 502
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 1 cut(s) 270
HinfI GANTC 2 cut(s) 5, 88
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 2 cut(s) 197, 374
Hpy188I TCNGA 1 cut(s) 69
Hpy8I GTNNAC 2 cut(s) 197, 374
Hpy99I CGWCG 2 cut(s) 13, 88
HpyCH4III ACNGT 3 cut(s) 238, 401, 424
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 3 cut(s) 141, 197, 266
HpySE526I ACGT 1 cut(s) 11
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 1 cut(s) 270
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 2 cut(s) 286, 304
LmnI GCTCC 2 cut(s) 124, 299
LpnPI CCDG 3 cut(s) 186, 213, 354
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 1 cut(s) 451
MaeII ACGT 1 cut(s) 11
MalI GATC 2 cut(s) 288, 306
MboI GATC 2 cut(s) 286, 304
MboII GAAGA 6 cut(s) 146, 161, 179, 254, 257, 362
MhlI GDGCHC 2 cut(s) 121, 199
MluCI AATT 4 cut(s) 19, 320, 333, 453
MlyI GAGTC 1 cut(s) 97
MnlI CCTC 3 cut(s) 41, 72, 75
MseI TTAA 1 cut(s) 392
MslI CAYNNNNRTG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
NdeI CATATG 1 cut(s) 73
NdeII GATC 2 cut(s) 286, 304
NlaIII CATG 1 cut(s) 270
PkrI GCNGC 2 cut(s) 206, 503
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 1 cut(s) 392
SatI GCNGC 2 cut(s) 205, 502
Sau3AI GATC 2 cut(s) 286, 304
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 201
SduI GDGCHC 2 cut(s) 121, 199
SetI ASST 8 cut(s) 14, 33, 64, 202, 229, 304, 498, 506
SfaNI GCATC 1 cut(s) 451
SmiMI CAYNNNNRTG 1 cut(s) 102
Sse9I AATT 4 cut(s) 19, 320, 333, 453
SsiI CCGC 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 199
TaaI ACNGT 3 cut(s) 238, 401, 424
TaiI ACGT 1 cut(s) 14
TaqI TCGA 3 cut(s) 8, 86, 240
TasI AATT 4 cut(s) 19, 320, 333, 453
Tru1I TTAA 1 cut(s) 392
Tru9I TTAA 1 cut(s) 392
TscAI CASTG 2 cut(s) 31, 427
TseI GCWGC 2 cut(s) 204, 501
TspDTI ATGAA 3 cut(s) 72, 162, 180
TspGWI ACGGA 2 cut(s) 391, 497
TspRI CASTG 2 cut(s) 31, 427
VneI GTGCAC 1 cut(s) 195
XapI RAATTY 1 cut(s) 19
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.