Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020646.1

Orthogroup ID

OG0001050

Physical Location & Seq

Genomic Coordinates Reverse (-)

3171 .. 3849

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020646.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggatccatcccaaatatcttcatcctctctgtcttcaaatggaaccattgagtattataattatgtcttggccgcatttgatcaggagcaagattttttacttcgtacgtatgctaacaacaatctcctcttggcggaacatctcaacgacgaagaggacgatgctcaatcacaaaggagaggcatagttcctggtcacatagttatttatcgtgatcgagaagttgctgcacacaatttgtttacagactattttgcagaggtccctcgatttggtgagataaaatttcacagacgttttcgaatgagtaaatgtttatttcatcgtattgctgacacggtcaaaaatcatgacaacttctttgtgcaacaacgcgatgaaattgagatatttggggagcaatatctcagaaagccaacagccattgatgttgcaagacttcttcatattggtgaagaacgtggatttccgggaatgttaggaagcttagattgcatgcactggaggcaaggttctaaaaaacgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_tran

Protein Analysis

176

Amino Acids

20.6

Weight (kDa)

6.05

Isoelectric Point (pI)

59.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001050)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29014 FvH4_5g31251 FvH4_6g30412 FvH4_7g13271
prunus_persica	Prupe.4G287300_v2.0.a1
pyrus_communis	pycom02g25100
rosa_laevigata	RLG00000014831 RLG00000016178 RLG00000018236 RLG00000023938 RLG00000029894 RLG00000033609
rosa_multiflora	Rmu_sc0000353.1_g000032 Rmu_sc0000453.1_g000001 Rmu_sc0000453.1_g000002 Rmu_sc0006593.1_g000011 Rmu_sc0008708.1_g000004 Rmu_sc0016357.1_g000001 Rmu_sc0020646.1_g000003 Rmu_sc0021515.1_g000001 Rmu_sc0022529.1_g000001 Rmu_ssc0000007.1_g000036
rosa_roxburghii	Rroxscaffold_2G00136660 Rroxscaffold_3G00259610 Rroxscaffold_4G00321120 Rroxscaffold_5G00360960 Rroxscaffold_6G00390120 Rroxscaffold_7G00185660 Rroxscaffold_7G00210600
rosa_rugosa	Rorug01G0079400 Rorug01G0079500 Rorug05G0091700
rosa_samantha	Rh1AG035100 Rh1AG206900 Rh1AG407300 Rh1AG407400 Rh1BG078000 Rh1CG021000 Rh1CG022600 Rh1CG094400 Rh1CG106900 Rh1CG191800 Rh1DG101300 Rh1DG115800 Rh2AG342500 Rh2AG565100 Rh2CG424000 Rh2CG463100 Rh2DG368700 Rh3CG298500 Rh3DG294400 Rh4CG123400 Rh5CG341800 Rh6AG163100 Rh6AG163200 Rh6DG128500 Rh7BG334100 Rh7DG175800 Rh7DG284000
rosa_wichuraiana	Rw5G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	60
AccII	CGCG	1 cut(s)	378
AciI	CCGC	2 cut(s)	75, 137
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	287
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	2 cut(s)	136, 275
AgsI	TTSAA	1 cut(s)	39
AjnI	CCWGG	1 cut(s)	193
AloI	GAACNNNNNNTCC	2 cut(s)	499, 531
AluBI	AGCT	1 cut(s)	489
AluI	AGCT	1 cut(s)	489
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	287
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	474
AsuHPI	GGTGA	2 cut(s)	290, 467
AsuII	TTCGAA	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	265
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	195
BclI	TGATCA	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	474
BfaI	CTAG	1 cut(s)	529
BisI	GCNGC	2 cut(s)	75, 231
BlsI	GCNGC	2 cut(s)	76, 232
Bme1390I	CCNGG	2 cut(s)	195, 474
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	3 cut(s)	6, 46, 267
BmrFI	CCNGG	2 cut(s)	195, 474
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	526
Bpu14I	TTCGAA	1 cut(s)	304
BpuMI	CCSGG	1 cut(s)	474
BsaAI	YACGTR	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	499, 529
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 275
Bse1I	ACTGG	1 cut(s)	509
BseBI	CCWGG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	8, 23
BseLI	CCNNNNNNNGG	2 cut(s)	136, 275
BseMII	CTCAG	1 cut(s)	424
BseNI	ACTGG	1 cut(s)	509
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	217
BsgI	GTGCAG	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	473
BsiWI	CGTACG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	2 cut(s)	136, 275
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	74
Bsp119I	TTCGAA	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	4, 82, 217
BspACI	CCGC	2 cut(s)	75, 137
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	423
BspFNI	CGCG	1 cut(s)	378
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	3 cut(s)	6, 46, 267
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	509
BssMI	GATC	3 cut(s)	4, 82, 217
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	343
Bst6I	CTCTTC	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	111
BstBI	TTCGAA	1 cut(s)	304
BstC8I	GCNNGC	1 cut(s)	500
BstDEI	CTNAG	2 cut(s)	410, 490
BstF5I	GGATG	2 cut(s)	8, 23
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	3 cut(s)	7, 85, 220
BstMBI	GATC	3 cut(s)	4, 82, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	495, 508
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	2 cut(s)	193, 472
BstSNI	TACGTA	1 cut(s)	111
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	74
BtgZI	GCGATG	1 cut(s)	393
BtsCI	GGATG	2 cut(s)	8, 23
BtsIMutI	CAGTG	1 cut(s)	502
Cac8I	GCNNGC	1 cut(s)	500
CciI	TCATGA	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	2 cut(s)	353, 499
CviJI	RGCY	4 cut(s)	74, 418, 425, 489
CviKI_1	RGCY	4 cut(s)	74, 418, 425, 489
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	2 cut(s)	410, 490
DpnI	GATC	3 cut(s)	6, 84, 219
DpnII	GATC	3 cut(s)	4, 82, 217
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	152
Eco105I	TACGTA	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	193
FaeI	CATG	2 cut(s)	356, 502
FaiI	YATR	8 cut(s)	60, 66, 114, 188, 203, 354, 450, 500
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	2 cut(s)	352, 498
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	75, 231
FokI	GGATG	1 cut(s)	10
Fsp4HI	GCNGC	2 cut(s)	75, 231
FspBI	CTAG	1 cut(s)	529
GluI	GCNGC	2 cut(s)	75, 231
GsuI	CTGGAG	1 cut(s)	526
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	473
Hin1II	CATG	2 cut(s)	356, 502
HindIII	AAGCTT	1 cut(s)	487
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	2 cut(s)	290, 467
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	1 cut(s)	413
Hpy188III	TCNNGA	4 cut(s)	86, 215, 221, 353
Hpy8I	GTNNAC	1 cut(s)	246
Hpy99I	CGWCG	1 cut(s)	155
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4IV	ACGT	3 cut(s)	110, 298, 463
HpyCH4V	TGCA	6 cut(s)	233, 260, 370, 437, 498, 502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	495, 508
HpyF3I	CTNAG	2 cut(s)	410, 490
HpySE526I	ACGT	3 cut(s)	110, 298, 463
Hsp92II	CATG	2 cut(s)	356, 502
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	4, 82, 217
LmnI	GCTCC	2 cut(s)	88, 400
LpnPI	CCDG	5 cut(s)	71, 180, 207, 486, 490
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	529
MaeII	ACGT	3 cut(s)	110, 298, 463
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	3 cut(s)	6, 84, 219
MboI	GATC	3 cut(s)	4, 82, 217
MboII	GAAGA	5 cut(s)	12, 27, 167, 437, 470
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	4 cut(s)	61, 238, 287, 384
MnlI	CCTC	7 cut(s)	37, 140, 151, 176, 256, 279, 501
MslI	CAYNNNNRTG	1 cut(s)	453
MspI	CCGG	1 cut(s)	473
MspR9I	CCNGG	2 cut(s)	195, 474
MvaI	CCWGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	495, 508
NciI	CCSGG	1 cut(s)	474
NdeII	GATC	3 cut(s)	4, 82, 217
NlaIII	CATG	2 cut(s)	356, 502
NlaIV	GGNNCC	3 cut(s)	6, 46, 267
NmuCI	GTSAC	1 cut(s)	197
NspI	RCATGY	1 cut(s)	502
NspV	TTCGAA	1 cut(s)	304
PaeI	GCATGC	1 cut(s)	502
PagI	TCATGA	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
Pfl23II	CGTACG	1 cut(s)	107
PflFI	GACNNNGTC	1 cut(s)	341
PfoI	TCCNGGA	1 cut(s)	472
PkrI	GCNGC	2 cut(s)	76, 232
Ppu21I	YACGTR	1 cut(s)	111
PpuMI	RGGWCCY	1 cut(s)	265
PsiI	TTATAA	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspLI	CGTACG	1 cut(s)	107
PspN4I	GGNNCC	3 cut(s)	6, 46, 267
PspPI	GGNCC	1 cut(s)	265
PspPPI	RGGWCCY	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	341
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	453
SatI	GCNGC	2 cut(s)	75, 231
Sau3AI	GATC	3 cut(s)	4, 82, 217
Sau96I	GGNCC	1 cut(s)	265
ScrFI	CCNGG	2 cut(s)	195, 474
SetI	ASST	6 cut(s)	113, 267, 301, 466, 491, 517
SfaNI	GCATC	1 cut(s)	154
SfuI	TTCGAA	1 cut(s)	304
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	453
SnaBI	TACGTA	1 cut(s)	111
SphI	GCATGC	1 cut(s)	502
Sse9I	AATT	4 cut(s)	61, 238, 287, 384
SsiI	CCGC	2 cut(s)	75, 137
SspMI	CTAG	1 cut(s)	529
StyD4I	CCNGG	2 cut(s)	193, 472
TaaI	ACNGT	1 cut(s)	343
TaiI	ACGT	3 cut(s)	113, 301, 466
TaqI	TCGA	3 cut(s)	220, 271, 304
TasI	AATT	4 cut(s)	61, 238, 287, 384
TauI	GCSGC	1 cut(s)	77
TscAI	CASTG	1 cut(s)	509
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	4 cut(s)	12, 314, 396, 437
TspRI	CASTG	1 cut(s)	509
Tth111I	GACNNNGTC	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	1 cut(s)	502
XspI	CTAG	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.