Rh1CG191800

No apical meristem-associated C-terminal domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
41641674 .. 41644196
2523 bp
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UTR
Exon/CDS
Intron
Rh1CG191800.1

Sequence Viewer

Length: 363 bp
ATGGCTTTGATGCCATTGAATTTCACTAACCTCCTTAACAACGAATCAGCCCTCAGTGACCTTAATGAACCACACAAATTTCCGGCGAGTCAGTATCAGTCCAATGGTTCTACTTATGCTCATTCACCATATGAAGATTGCACTTATGAAGAGACTCCTACAAATGAAGTTTACACTTACAAAGAGACACCACGTGCATCTAGCAGCAAGAAAGCACAAAGACAAACCCAAAGACAAGCCAATTTCACAATCGAAGAAGACAAACTTCTTGTATCTGTATGGCTCAATATTGGTTTAGACCAGGTGAAAGGAGCCGTTAGAAATAGCCGTTGTAAACTAGCCGTTATTTTAGATTTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.64

Weight (kDa)

5.64

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 19, 77
AcvI CACGTG 1 cut(s) 194
AdeI CACNNNGTG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 19
AjnI CCWGG 1 cut(s) 300
Alw26I GTCTC 2 cut(s) 146, 179
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 2 cut(s) 19, 77
AsuHPI GGTGA 2 cut(s) 117, 316
BbrPI CACGTG 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 216
BceAI ACGGC 3 cut(s) 299, 312, 326
BciT130I CCWGG 1 cut(s) 302
BcoDI GTCTC 2 cut(s) 146, 179
BfaI CTAG 2 cut(s) 201, 338
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 302
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 264
BsaAI YACGTR 1 cut(s) 194
BseBI CCWGG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 83
BsmAI GTCTC 2 cut(s) 146, 179
BspCNI CTCAG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 313
Bst2UI CCWGG 1 cut(s) 302
Bst6I CTCTTC 1 cut(s) 144
BstBAI YACGTR 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 53
BstMAI GTCTC 2 cut(s) 146, 179
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 216
BstV2I GAAGAC 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 61
CsiI ACCWGGT 1 cut(s) 300
CviJI RGCY 7 cut(s) 5, 50, 239, 283, 314, 327, 341
CviKI_1 RGCY 7 cut(s) 5, 50, 239, 283, 314, 327, 341
DdeI CTNAG 1 cut(s) 53
DraIII CACNNNGTG 1 cut(s) 194
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco72I CACGTG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 300
FaiI YATR 5 cut(s) 117, 130, 132, 147, 280
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FauNDI CATATG 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 2 cut(s) 201, 338
GluI GCNGC 1 cut(s) 205
HapII CCGG 1 cut(s) 83
HinfI GANTC 3 cut(s) 44, 88, 154
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 117, 316
Hpy166II GTNNAC 2 cut(s) 172, 335
Hpy8I GTNNAC 2 cut(s) 172, 335
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 2 cut(s) 141, 197
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 193
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 3 cut(s) 96, 287, 314
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 1 cut(s) 206
MabI ACCWGGT 1 cut(s) 300
MaeI CTAG 2 cut(s) 201, 338
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 56
MboII GAAGA 4 cut(s) 146, 161, 266, 269
MluCI AATT 3 cut(s) 19, 77, 241
MlyI GAGTC 2 cut(s) 97, 148
MnlI CCTC 2 cut(s) 41, 62
MseI TTAA 3 cut(s) 36, 63, 361
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
NdeI CATATG 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 206
PleI GAGTC 2 cut(s) 96, 148
PmaCI CACGTG 1 cut(s) 194
PmlI CACGTG 1 cut(s) 194
PpsI GAGTC 2 cut(s) 96, 148
Ppu21I YACGTR 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 300
PspCI CACGTG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 313
SaqAI TTAA 3 cut(s) 36, 63, 361
SatI GCNGC 1 cut(s) 205
SchI GAGTC 2 cut(s) 97, 148
ScrFI CCNGG 1 cut(s) 302
SetI ASST 4 cut(s) 33, 63, 196, 306
SexAI ACCWGGT 1 cut(s) 300
SfaNI GCATC 1 cut(s) 206
Sse9I AATT 3 cut(s) 19, 77, 241
SspI AATATT 1 cut(s) 289
SspMI CTAG 2 cut(s) 201, 338
StyD4I CCNGG 1 cut(s) 300
TaiI ACGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 252
TasI AATT 3 cut(s) 19, 77, 241
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 3 cut(s) 36, 63, 361
Tru9I TTAA 3 cut(s) 36, 63, 361
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 4 cut(s) 81, 147, 162, 180
TspRI CASTG 1 cut(s) 61
XapI RAATTY 2 cut(s) 19, 77
XspI CTAG 2 cut(s) 201, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.