Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001050

Physical Location & Seq

Genomic Coordinates Reverse (-)

4488472 .. 4489997

Gene Structure 1526 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016178

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGCCATTGAATTTCACTAACCTCCTCAACAACGAATCAGCCATCAGTGACCTTAATGAACCACACGATTTTCCAGCGAGTCAATATCAGTCCAATGGTTCTACTTATGCTCATTCACCATATGAAGAGACGCCACGTGCACCTAGCAGCAAGAAAGCACAAAGACAAGTCAACTTCACAATCGAGGAAGACAAACTTCTTGTATCTGCATGGCTCAATATTGGCTTAGACCCGGTGAAAGGAGTCGATCAAAAGAAGAAACAATTCTGGAAAAGGATTACTGATTACTTTGAAAAACACAAGAAGTGGTCTGCTGAAAGAAGTGAAAAATCATTAACAAACCGTTGGTCAACAATCAGCAGCACTGTGAGTAAGTTTTGTGGACATTATGCTCAAATTGAACACTTACGGAGAAGTGGTTATACGGAACAAGATAAGATAGTGGAAGCAAAAGAGAATTTCAAGGAAGAGGAAGGTCATGCATTTGTACTTGACCATTGTTGGGTTATTTTGAGGTTTCAGCAAAAATGGATGGATGAACATCAAAAAATTGAAAGTAAGAGAAAGTTGAAGGCTCCTTCTAGTAAAGCTGCAGATTCTATCAATTTAGAAGATGATGATACAGAAGCTCCTGAACTTGCAAGCTTGAAGAGGCCAATTGGGAGAAAGGCTACAAAGGAAGCTATCAAAAAGGCAAAATCCAAAGAACAGGTTGGTGAAAATGAGAACGAATCTTCAAAAATCCATTCGGAGTTGGAAGAGTTGAGGGAAAGGAGATTAGAAAGTGACCGCATAAAGGCAGAACAATTTAAGTTGCTACTTGCTACTGAGCAAAAGCAAGTTGCTCTTAAAGAAAAGGAAATTGAACTTCAGGCTCGAAGTGAGGATGCTAAAATAATGTCTATGGATGCTAGTGTCATGCCTCCATTTCAAGCAGAGTACTTTATTAGTCTTCAAAAGGAAATCTTGGCAAAAAGAGCTAGTAGGAATGAAAATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

334

Amino Acids

38.58

Weight (kDa)

7.14

Isoelectric Point (pI)

64.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	161 - 322	8.5e-19	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001050)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29014 FvH4_5g31251 FvH4_6g30412 FvH4_7g13271
prunus_persica	Prupe.4G287300_v2.0.a1
pyrus_communis	pycom02g25100
rosa_laevigata	RLG00000014831 RLG00000016178 RLG00000018236 RLG00000023938 RLG00000029894 RLG00000033609
rosa_multiflora	Rmu_sc0000353.1_g000032 Rmu_sc0000453.1_g000001 Rmu_sc0000453.1_g000002 Rmu_sc0006593.1_g000011 Rmu_sc0008708.1_g000004 Rmu_sc0016357.1_g000001 Rmu_sc0020646.1_g000003 Rmu_sc0021515.1_g000001 Rmu_sc0022529.1_g000001 Rmu_ssc0000007.1_g000036
rosa_roxburghii	Rroxscaffold_2G00136660 Rroxscaffold_3G00259610 Rroxscaffold_4G00321120 Rroxscaffold_5G00360960 Rroxscaffold_6G00390120 Rroxscaffold_7G00185660 Rroxscaffold_7G00210600
rosa_rugosa	Rorug01G0079400 Rorug01G0079500 Rorug05G0091700
rosa_samantha	Rh1AG035100 Rh1AG206900 Rh1AG407300 Rh1AG407400 Rh1BG078000 Rh1CG021000 Rh1CG022600 Rh1CG094400 Rh1CG106900 Rh1CG191800 Rh1DG101300 Rh1DG115800 Rh2AG342500 Rh2AG565100 Rh2CG424000 Rh2CG463100 Rh2DG368700 Rh3CG298500 Rh3DG294400 Rh4CG123400 Rh5CG341800 Rh6AG163100 Rh6AG163200 Rh6DG128500 Rh7BG334100 Rh7DG175800 Rh7DG284000
rosa_wichuraiana	Rw5G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	790
AcsI	RAATTY	2 cut(s)	10, 457
AcuI	CTGAAG	1 cut(s)	854
AcvI	CACGTG	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	2 cut(s)	489, 941
AfiI	CCNNNNNNNGG	3 cut(s)	239, 502, 796
AluBI	AGCT	5 cut(s)	590, 629, 645, 683, 980
AluI	AGCT	5 cut(s)	590, 629, 645, 683, 980
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	122
Alw44I	GTGCAC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	653
ApaLI	GTGCAC	1 cut(s)	138
ApeKI	GCWGC	3 cut(s)	147, 360, 590
ApoI	RAATTY	2 cut(s)	10, 457
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
Asp700I	GAANNNNTTC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	108, 247, 728
BaeGI	GKGCMC	1 cut(s)	142
BarI	GAAGNNNNNNTAC	2 cut(s)	406, 438
BbrPI	CACGTG	1 cut(s)	137
BbsI	GAAGAC	2 cut(s)	195, 944
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	3 cut(s)	159, 372, 577
BccI	CCATC	2 cut(s)	50, 526
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	4 cut(s)	144, 582, 912, 981
BfmI	CTRYAG	1 cut(s)	591
BisI	GCNGC	3 cut(s)	148, 361, 591
BlsI	GCNGC	3 cut(s)	149, 362, 592
BmcAI	AGTACT	1 cut(s)	941
Bme1390I	CCNGG	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	2 cut(s)	877, 898
BpiI	GAAGAC	2 cut(s)	195, 944
BpuMI	CCSGG	1 cut(s)	233
BsaAI	YACGTR	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	540
BsaHI	GRCGYC	1 cut(s)	131
BsaXI	ACNNNNNCTCC	4 cut(s)	403, 433, 613, 643
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 502, 796
Bse8I	GATNNNNATC	1 cut(s)	540
BseGI	GGATG	4 cut(s)	537, 541, 892, 913
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	3 cut(s)	239, 502, 796
BseMII	CTCAG	1 cut(s)	819
BseRI	GAGGAG	1 cut(s)	14
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	3 cut(s)	159, 372, 577
BshFI	GGCC	1 cut(s)	655
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	3 cut(s)	239, 502, 796
BsmAI	GTCTC	1 cut(s)	122
BsmBI	CGTCTC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	655
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	1 cut(s)	790
BspANI	GGCC	1 cut(s)	655
BspCNI	CTCAG	1 cut(s)	820
BspLI	GGNNCC	1 cut(s)	576
BspMAI	CTGCAG	1 cut(s)	595
BssMI	GATC	1 cut(s)	247
BssNI	GRCGYC	1 cut(s)	131
Bst4CI	ACNGT	2 cut(s)	344, 367
Bst6I	CTCTTC	4 cut(s)	120, 462, 644, 753
BstACI	GRCGYC	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	643
BstDEI	CTNAG	2 cut(s)	226, 828
BstF5I	GGATG	4 cut(s)	537, 541, 892, 913
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	977
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	591
BstSLI	GKGCMC	1 cut(s)	142
BstV1I	GCAGC	3 cut(s)	159, 372, 577
BstV2I	GAAGAC	2 cut(s)	195, 944
BsuRI	GGCC	1 cut(s)	655
BtsCI	GGATG	4 cut(s)	537, 541, 892, 913
BtsIMutI	CAGTG	2 cut(s)	52, 363
Cac8I	GCNNGC	1 cut(s)	643
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	488, 940
CviAII	CATG	3 cut(s)	210, 479, 919
CviQI	GTAC	2 cut(s)	488, 940
DdeI	CTNAG	2 cut(s)	226, 828
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eam1104I	CTCTTC	4 cut(s)	120, 462, 644, 753
EarI	CTCTTC	4 cut(s)	120, 462, 644, 753
Eco57I	CTGAAG	1 cut(s)	854
Eco72I	CACGTG	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	484
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	3 cut(s)	213, 482, 922
FalI	AAGNNNNNCTT	6 cut(s)	180, 212, 831, 863, 950, 982
FatI	CATG	3 cut(s)	209, 478, 918
FauNDI	CATATG	1 cut(s)	121
Fnu4HI	GCNGC	3 cut(s)	148, 361, 591
FokI	GGATG	4 cut(s)	544, 548, 899, 920
Fsp4HI	GCNGC	3 cut(s)	148, 361, 591
FspBI	CTAG	4 cut(s)	144, 582, 912, 981
GluI	GCNGC	3 cut(s)	148, 361, 591
HaeIII	GGCC	1 cut(s)	655
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	3 cut(s)	213, 482, 922
HincII	GTYRAC	2 cut(s)	172, 351
HindII	GTYRAC	2 cut(s)	172, 351
HindIII	AAGCTT	1 cut(s)	643
HinfI	GANTC	5 cut(s)	35, 79, 243, 596, 731
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	3 cut(s)	108, 247, 728
Hpy166II	GTNNAC	4 cut(s)	140, 172, 351, 383
Hpy188I	TCNGA	1 cut(s)	751
Hpy188III	TCNNGA	2 cut(s)	268, 632
Hpy8I	GTNNAC	4 cut(s)	140, 172, 351, 383
HpyAV	CCTTC	3 cut(s)	467, 565, 588
HpyCH4III	ACNGT	2 cut(s)	344, 367
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	5 cut(s)	140, 209, 482, 593, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	977
HpyF3I	CTNAG	2 cut(s)	226, 828
HpySE526I	ACGT	1 cut(s)	136
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	3 cut(s)	213, 482, 922
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	2 cut(s)	580, 634
LpnPI	CCDG	6 cut(s)	87, 246, 253, 645, 695, 857
Lsp1109I	GCAGC	3 cut(s)	159, 372, 577
LweI	GCATC	2 cut(s)	877, 898
MaeI	CTAG	4 cut(s)	144, 582, 912, 981
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	2 cut(s)	47, 785
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	9 cut(s)	137, 200, 268, 479, 623, 661, 726, 770, 944
MfeI	CAATTG	1 cut(s)	657
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	9 cut(s)	10, 263, 396, 457, 549, 604, 657, 806, 861
MlyI	GAGTC	2 cut(s)	88, 252
MmeI	TCCRAC	1 cut(s)	735
MnlI	CCTC	9 cut(s)	32, 35, 178, 463, 507, 645, 759, 877, 933
Mph1103I	ATGCAT	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	4 cut(s)	54, 335, 810, 849
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	233
MunI	CAATTG	1 cut(s)	657
MwoI	GCNNNNNNNGC	1 cut(s)	977
NciI	CCSGG	1 cut(s)	233
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	3 cut(s)	213, 482, 922
NlaIV	GGNNCC	1 cut(s)	576
NmuCI	GTSAC	2 cut(s)	47, 785
NsiI	ATGCAT	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	3 cut(s)	35, 596, 731
PkrI	GCNGC	3 cut(s)	149, 362, 592
PleI	GAGTC	2 cut(s)	87, 251
PmaCI	CACGTG	1 cut(s)	137
PmlI	CACGTG	1 cut(s)	137
PpsI	GAGTC	2 cut(s)	87, 251
Ppu21I	YACGTR	1 cut(s)	137
PspCI	CACGTG	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	576
PstI	CTGCAG	1 cut(s)	595
RsaI	GTAC	2 cut(s)	489, 941
RsaNI	GTAC	2 cut(s)	488, 940
SaqAI	TTAA	4 cut(s)	54, 335, 810, 849
SatI	GCNGC	3 cut(s)	148, 361, 591
Sau3AI	GATC	1 cut(s)	247
ScaI	AGTACT	1 cut(s)	941
SchI	GAGTC	2 cut(s)	88, 252
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	142
SfaNI	GCATC	2 cut(s)	877, 898
SfcI	CTRYAG	1 cut(s)	591
Sse9I	AATT	9 cut(s)	10, 263, 396, 457, 549, 604, 657, 806, 861
SsiI	CCGC	1 cut(s)	790
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	4 cut(s)	144, 582, 912, 981
StyD4I	CCNGG	1 cut(s)	231
TaaI	ACNGT	2 cut(s)	344, 367
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	3 cut(s)	183, 246, 877
TasI	AATT	9 cut(s)	10, 263, 396, 457, 549, 604, 657, 806, 861
TatI	WGTACW	2 cut(s)	487, 939
TfiI	GAWTC	3 cut(s)	35, 596, 731
Tru1I	TTAA	4 cut(s)	54, 335, 810, 849
Tru9I	TTAA	4 cut(s)	54, 335, 810, 849
TscAI	CASTG	2 cut(s)	52, 370
TseFI	GTSAC	2 cut(s)	47, 785
TseI	GCWGC	3 cut(s)	147, 360, 590
Tsp45I	GTSAC	2 cut(s)	47, 785
TspDTI	ATGAA	3 cut(s)	72, 138, 552
TspGWI	ACGGA	2 cut(s)	424, 440
TspRI	CASTG	2 cut(s)	52, 370
VneI	GTGCAC	1 cut(s)	138
XapI	RAATTY	2 cut(s)	10, 457
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	4 cut(s)	144, 582, 912, 981
ZrmI	AGTACT	1 cut(s)	941
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.