Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001050

Physical Location & Seq

Genomic Coordinates Forward (+)

3548810 .. 3550044

Gene Structure 1235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG021000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGTTGATGGGCGTTATTGTGGAAGCAAAAGAGAATTTCAAGCTAGAGGAAGGTCATGCATTTGTGCTTGACCATTGTTGGGTTGTTTTGAGGTTTCAGCAAAAATGGATGGTTGAACATCAAAAAATCGAAAGTAAGAGAAAGTGGAAGACTCCTTCTAGTAAGGCTGCAGATTCTATCAATTTAGAAGACGATGATACAGAAGCTCTTGAACCTGCAAGCTTGAAGAGACCAATTGGGAGAAAGGCTGCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

85

Amino Acids

9.82

Weight (kDa)

7.89

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	20 - 85	2.6e-09	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001050)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29014 FvH4_5g31251 FvH4_6g30412 FvH4_7g13271
prunus_persica	Prupe.4G287300_v2.0.a1
pyrus_communis	pycom02g25100
rosa_laevigata	RLG00000014831 RLG00000016178 RLG00000018236 RLG00000023938 RLG00000029894 RLG00000033609
rosa_multiflora	Rmu_sc0000353.1_g000032 Rmu_sc0000453.1_g000001 Rmu_sc0000453.1_g000002 Rmu_sc0006593.1_g000011 Rmu_sc0008708.1_g000004 Rmu_sc0016357.1_g000001 Rmu_sc0020646.1_g000003 Rmu_sc0021515.1_g000001 Rmu_sc0022529.1_g000001 Rmu_ssc0000007.1_g000036
rosa_roxburghii	Rroxscaffold_2G00136660 Rroxscaffold_3G00259610 Rroxscaffold_4G00321120 Rroxscaffold_5G00360960 Rroxscaffold_6G00390120 Rroxscaffold_7G00185660 Rroxscaffold_7G00210600
rosa_rugosa	Rorug01G0079400 Rorug01G0079500 Rorug05G0091700
rosa_samantha	Rh1AG035100 Rh1AG206900 Rh1AG407300 Rh1AG407400 Rh1BG078000 Rh1CG021000 Rh1CG022600 Rh1CG094400 Rh1CG106900 Rh1CG191800 Rh1DG101300 Rh1DG115800 Rh2AG342500 Rh2AG565100 Rh2CG424000 Rh2CG463100 Rh2DG368700 Rh3CG298500 Rh3DG294400 Rh4CG123400 Rh5CG341800 Rh6AG163100 Rh6AG163200 Rh6DG128500 Rh7BG334100 Rh7DG175800 Rh7DG284000
rosa_wichuraiana	Rw5G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	4 cut(s)	40, 116, 212, 226
AluBI	AGCT	3 cut(s)	43, 206, 222
AluI	AGCT	3 cut(s)	43, 206, 222
Alw26I	GTCTC	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	167, 248
ApoI	RAATTY	1 cut(s)	34
BbsI	GAAGAC	2 cut(s)	155, 195
BbvI	GCAGC	2 cut(s)	154, 235
BccI	CCATC	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	2 cut(s)	44, 159
BfmI	CTRYAG	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	2 cut(s)	168, 249
BlsI	GCNGC	2 cut(s)	169, 250
BpiI	GAAGAC	2 cut(s)	155, 195
BsaI	GGTCTC	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseXI	GCAGC	2 cut(s)	154, 235
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	223
Bso31I	GGTCTC	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	154, 235
BstV2I	GAAGAC	2 cut(s)	155, 195
BtsCI	GGATG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	220
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	5 cut(s)	43, 167, 206, 222, 248
CviKI_1	RGCY	5 cut(s)	43, 167, 206, 222, 248
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	61
FaeI	CATG	1 cut(s)	59
FaiI	YATR	1 cut(s)	57
FatI	CATG	1 cut(s)	55
Fnu4HI	GCNGC	2 cut(s)	168, 249
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	168, 249
FspBI	CTAG	2 cut(s)	44, 159
GluI	GCNGC	2 cut(s)	168, 249
Hin1II	CATG	1 cut(s)	59
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	2 cut(s)	151, 173
Hpy188III	TCNNGA	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	44, 165
HpyCH4V	TGCA	4 cut(s)	59, 170, 218, 251
Hsp92II	CATG	1 cut(s)	59
LpnPI	CCDG	1 cut(s)	228
Lsp1109I	GCAGC	2 cut(s)	154, 235
MaeI	CTAG	2 cut(s)	44, 159
MboII	GAAGA	3 cut(s)	160, 200, 238
MfeI	CAATTG	1 cut(s)	234
MluCI	AATT	3 cut(s)	34, 181, 234
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	2 cut(s)	40, 84
Mph1103I	ATGCAT	1 cut(s)	61
MunI	CAATTG	1 cut(s)	234
NlaIII	CATG	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	169, 250
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	172
SatI	GCNGC	2 cut(s)	168, 249
SchI	GAGTC	1 cut(s)	145
SetI	ASST	6 cut(s)	45, 55, 95, 208, 217, 224
SfcI	CTRYAG	1 cut(s)	168
SgeI	CNNG	9 cut(s)	52, 56, 68, 80, 171, 221, 227, 231, 235
Sse9I	AATT	3 cut(s)	34, 181, 234
SspMI	CTAG	2 cut(s)	44, 159
TaqI	TCGA	1 cut(s)	129
TasI	AATT	3 cut(s)	34, 181, 234
TfiI	GAWTC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	167, 248
XapI	RAATTY	1 cut(s)	34
XspI	CTAG	2 cut(s)	44, 159
Zsp2I	ATGCAT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.