Rroxscaffold_2G00136660

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001050
Physical Location & Seq
Reverse (-)
74339590 .. 74339922
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00136660.1

Sequence Viewer

Length: 333 bp
ATGGCTTCGATGCCATTGAATTTCACTAACCTCCTCAACAACGAATCAGCCATCAGTGACCTTAATGAACCACACGATTTTCCAACGAGTCAATATCAGTCCAATGGTTCTACTTATGCTCATTCACCATATGAAGATTGCACTTATGAAGAGACTCGTACAAATGAAGTTTACACTTACGAAGAGACACCACGTGCACCTAGCAGCAAGAAAGCACAAAGACAAGCCCAAAGACAAGCCAACTTCACAATCGAGGAAGACAAACTTCTTGTATCTGCATGGCTCAATATTGGCTTAGACCCGGTGAAAGGAGCCGATCAAAAGAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

110

Amino Acids

12.51

Weight (kDa)

4.94

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 19
AcvI CACGTG 1 cut(s) 194
AdeI CACNNNGTG 1 cut(s) 194
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 308
AgsI TTSAA 1 cut(s) 19
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 2 cut(s) 146, 179
Alw44I GTGCAC 1 cut(s) 195
ApaLI GTGCAC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 19
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 117, 316
BaeGI GKGCMC 1 cut(s) 199
BbrPI CACGTG 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 216
BccI CCATC 1 cut(s) 59
BcnI CCSGG 1 cut(s) 302
BcoDI GTCTC 2 cut(s) 146, 179
BfaI CTAG 1 cut(s) 201
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 302
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 1 cut(s) 302
BpiI GAAGAC 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 308
BseLI CCNNNNNNNGG 1 cut(s) 308
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 199
BsiSI CCGG 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 2 cut(s) 146, 179
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 313
BssMI GATC 1 cut(s) 316
Bst6I CTCTTC 2 cut(s) 144, 177
BstBAI YACGTR 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 295
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 2 cut(s) 146, 179
BstMBI GATC 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 216
BstV2I GAAGAC 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 61
Csp6I GTAC 1 cut(s) 159
CviAII CATG 1 cut(s) 279
CviJI RGCY 7 cut(s) 5, 50, 227, 239, 283, 294, 314
CviKI_1 RGCY 7 cut(s) 5, 50, 227, 239, 283, 294, 314
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 1 cut(s) 295
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
DraIII CACNNNGTG 1 cut(s) 194
Eam1104I CTCTTC 2 cut(s) 144, 177
EarI CTCTTC 2 cut(s) 144, 177
Eco72I CACGTG 1 cut(s) 194
FaeI CATG 1 cut(s) 282
FaiI YATR 5 cut(s) 117, 130, 132, 147, 280
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FatI CATG 1 cut(s) 278
FauNDI CATATG 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 1 cut(s) 201
GluI GCNGC 1 cut(s) 205
HapII CCGG 1 cut(s) 302
Hin1II CATG 1 cut(s) 282
HinfI GANTC 3 cut(s) 44, 88, 154
HpaII CCGG 1 cut(s) 302
HphI GGTGA 2 cut(s) 117, 316
Hpy166II GTNNAC 2 cut(s) 172, 197
Hpy8I GTNNAC 2 cut(s) 172, 197
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 3 cut(s) 141, 197, 278
HpyF3I CTNAG 1 cut(s) 295
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 1 cut(s) 282
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 1 cut(s) 315
Lsp1109I GCAGC 1 cut(s) 216
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 4 cut(s) 146, 161, 194, 269
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 1 cut(s) 19
MlyI GAGTC 2 cut(s) 97, 148
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 3 cut(s) 41, 44, 247
MseI TTAA 1 cut(s) 63
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 302
NciI CCSGG 1 cut(s) 302
NdeI CATATG 1 cut(s) 130
NdeII GATC 1 cut(s) 316
NlaIII CATG 1 cut(s) 282
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 206
PleI GAGTC 2 cut(s) 96, 148
PmaCI CACGTG 1 cut(s) 194
PmlI CACGTG 1 cut(s) 194
PpsI GAGTC 2 cut(s) 96, 148
Ppu21I YACGTR 1 cut(s) 194
PspCI CACGTG 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 313
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 1 cut(s) 316
SchI GAGTC 2 cut(s) 97, 148
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 1 cut(s) 199
SetI ASST 4 cut(s) 33, 63, 196, 202
Sse9I AATT 1 cut(s) 19
SspI AATATT 1 cut(s) 289
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 300
TaiI ACGT 1 cut(s) 196
TaqI TCGA 2 cut(s) 8, 252
TasI AATT 1 cut(s) 19
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 4 cut(s) 81, 147, 162, 180
TspRI CASTG 1 cut(s) 61
VneI GTGCAC 1 cut(s) 195
XapI RAATTY 1 cut(s) 19
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.