Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001050

Physical Location & Seq

Genomic Coordinates Forward (+)

58172703 .. 58173806

Gene Structure 1104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014831

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGATATGTTGCTTCAGTTTCCTGTTGCTCTGTCTTTATGGAAAACGTTCTTCAGGAAGTCACATTAGATTTGGGACTATCCAGATGAATTTGACGCCATTGAATTTCAGTAACCTCCTCAACGATGAATCAACCCTCAGTGATCTCAATGAACCACATCTGACATACGATTTCCTGGCGAGTCAGTATCATTCTGATAATGGTTCTACTTGTGCTCATTCACCATATGAAGATTGCACTTATGAAGAGGCACCTATTAATGAAGTTTACACTTATGAAGAGATGCCAAGTGCACGTAGCAGCAAGAAAGCACAAAGACAATCCAACTTCACAACTGAAGAAGACAAACTTCTTGTATCTGCATGGCTCAATATTAGCTTAGAGCGTTGTAAACTAGCTGTTAGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

137

Amino Acids

15.54

Weight (kDa)

5.3

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001050)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29014 FvH4_5g31251 FvH4_6g30412 FvH4_7g13271
prunus_persica	Prupe.4G287300_v2.0.a1
pyrus_communis	pycom02g25100
rosa_laevigata	RLG00000014831 RLG00000016178 RLG00000018236 RLG00000023938 RLG00000029894 RLG00000033609
rosa_multiflora	Rmu_sc0000353.1_g000032 Rmu_sc0000453.1_g000001 Rmu_sc0000453.1_g000002 Rmu_sc0006593.1_g000011 Rmu_sc0008708.1_g000004 Rmu_sc0016357.1_g000001 Rmu_sc0020646.1_g000003 Rmu_sc0021515.1_g000001 Rmu_sc0022529.1_g000001 Rmu_ssc0000007.1_g000036
rosa_roxburghii	Rroxscaffold_2G00136660 Rroxscaffold_3G00259610 Rroxscaffold_4G00321120 Rroxscaffold_5G00360960 Rroxscaffold_6G00390120 Rroxscaffold_7G00185660 Rroxscaffold_7G00210600
rosa_rugosa	Rorug01G0079400 Rorug01G0079500 Rorug05G0091700
rosa_samantha	Rh1AG035100 Rh1AG206900 Rh1AG407300 Rh1AG407400 Rh1BG078000 Rh1CG021000 Rh1CG022600 Rh1CG094400 Rh1CG106900 Rh1CG191800 Rh1DG101300 Rh1DG115800 Rh2AG342500 Rh2AG565100 Rh2CG424000 Rh2CG463100 Rh2DG368700 Rh3CG298500 Rh3DG294400 Rh4CG123400 Rh5CG341800 Rh6AG163100 Rh6AG163200 Rh6DG128500 Rh7BG334100 Rh7DG175800 Rh7DG284000
rosa_wichuraiana	Rw5G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	250
AclI	AACGTT	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	88, 103
AcuI	CTGAAG	2 cut(s)	36, 357
AcyI	GRCGYC	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	2 cut(s)	378, 398
AluI	AGCT	2 cut(s)	378, 398
Alw21I	GWGCWC	2 cut(s)	217, 295
Alw44I	GTGCAC	1 cut(s)	291
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	300
ApoI	RAATTY	2 cut(s)	88, 103
AseI	ATTAAT	1 cut(s)	258
Asp700I	GAANNNNTTC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	2 cut(s)	217, 295
BbvI	GCAGC	1 cut(s)	312
BciT130I	CCWGG	1 cut(s)	176
BfaI	CTAG	1 cut(s)	395
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	348
BsaAI	YACGTR	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	176
BseMII	CTCAG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	107
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	312
BshNI	GGYRCC	1 cut(s)	250
BsiHKAI	GWGCWC	2 cut(s)	217, 295
BslFI	GGGAC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	217, 295
Bsp143I	GATC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	250
BssMI	GATC	1 cut(s)	142
BssNI	GRCGYC	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	176
Bst6I	CTCTTC	2 cut(s)	240, 273
BstACI	GRCGYC	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	296
BstDEI	CTNAG	2 cut(s)	137, 379
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	145
CseI	GACGC	1 cut(s)	103
CviAII	CATG	1 cut(s)	363
CviJI	RGCY	3 cut(s)	367, 378, 398
CviKI_1	RGCY	3 cut(s)	367, 378, 398
DdeI	CTNAG	2 cut(s)	137, 379
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	240, 273
EarI	CTCTTC	2 cut(s)	240, 273
Eco57I	CTGAAG	2 cut(s)	36, 357
EcoRII	CCWGG	1 cut(s)	174
FaeI	CATG	1 cut(s)	366
FaiI	YATR	8 cut(s)	7, 39, 166, 226, 228, 243, 276, 364
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	1 cut(s)	362
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	301
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	1 cut(s)	395
GluI	GCNGC	1 cut(s)	301
HgaI	GACGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	366
HinfI	GANTC	2 cut(s)	128, 181
HphI	GGTGA	1 cut(s)	213
Hpy166II	GTNNAC	3 cut(s)	268, 293, 392
Hpy188I	TCNGA	2 cut(s)	162, 196
Hpy188III	TCNNGA	2 cut(s)	54, 82
Hpy8I	GTNNAC	3 cut(s)	268, 293, 392
HpyCH4IV	ACGT	2 cut(s)	46, 295
HpyCH4V	TGCA	3 cut(s)	237, 293, 362
HpyF3I	CTNAG	2 cut(s)	137, 379
HpySE526I	ACGT	2 cut(s)	46, 295
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	366
Kzo9I	GATC	1 cut(s)	142
LpnPI	CCDG	5 cut(s)	35, 39, 95, 161, 188
Lsp1109I	GCAGC	1 cut(s)	312
LweI	GCATC	1 cut(s)	273
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	2 cut(s)	46, 295
MaeIII	GTNAC	2 cut(s)	59, 110
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	6 cut(s)	42, 242, 257, 290, 350, 353
MhlI	GDGCHC	2 cut(s)	217, 295
MluCI	AATT	2 cut(s)	88, 103
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	4 cut(s)	125, 128, 146, 241
MroXI	GAANNNNTTC	1 cut(s)	46
MseI	TTAA	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	1 cut(s)	366
NlaIV	GGNNCC	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	302
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
Ppu21I	YACGTR	1 cut(s)	296
PshBI	ATTAAT	1 cut(s)	258
Psp1406I	AACGTT	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	2 cut(s)	217, 295
SetI	ASST	6 cut(s)	49, 117, 256, 298, 380, 400
SfaNI	GCATC	1 cut(s)	273
Sse9I	AATT	2 cut(s)	88, 103
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	1 cut(s)	395
StyD4I	CCNGG	1 cut(s)	174
TaiI	ACGT	2 cut(s)	49, 298
TasI	AATT	2 cut(s)	88, 103
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	300
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	7 cut(s)	101, 141, 165, 243, 258, 276, 291
TspRI	CASTG	1 cut(s)	145
VneI	GTGCAC	1 cut(s)	291
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	2 cut(s)	88, 103
XmnI	GAANNNNTTC	1 cut(s)	46
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.