Rh1BG078000

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001050
Physical Location & Seq
Reverse (-)
12122088 .. 12125407
3320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG078000.1

Sequence Viewer

Length: 1068 bp
ATGGACTCGATGTCATTGAATTTCACTGAGCTCATCAACAGTGAAACAAACCGCAATGAACCTCCTCTGACATATGATTTCCCGTCGAGTCAATATCACACCAATGGTTCTACTTGTGCTCCTATACCATTTGAAGATTGCACTTATGAAGAGACACTTACTAATGAAGATTGCACTAATAAAGAGACAACTTGTGCACCTAGCAGCAAGAAAGCACAAAGACAAGCTAACTTCACGGTCGAAGAAGACAAACTTCTTATATCTGCATGGCTCAATGTTAGCATAGACCAAGTGAAAGGAGCTGATCAAAAGAAAAAACAATTTTGGAAAAGAATTACTAAATACTTTGAAGATAACAAGAAGTGGTCTGGTGAACGGAGTGAAAAGTCATTAACGAACCGTTGGTCAAAAATCAATACTACTGTGAGTAAGTTTTATGGGCATCATTCTCAAATTGAACACTTACAGAAAAGTGATTACACGGAACAAGATAAGATAGTGGAGGCAAAAGAGATGTTCCAGAAAAAGGAAGGTCATACATTTGTACTTGACCATTGTTGGGCTATTATGAGGTTCCAGCAAAAATGGATGGACGAACATCAAAAAATCAATGCCAAGAGAAAGTTCAAGGCTCCTGATTCAATCAATTTAGAAGATGATGATGTAGAAGGCCCTGAACCTGCACCCTTGCAGAGGCCAATTGGGAGAAAGGCTGCAAAGGAAGTGATCAAAAAGGCAAAATCCAAAGAACAGGTTAGTGAAAATGAGACACCTTCGAAAAGTACTTCTAAGTTGGAAGAGTTTATGGCAAAAAAATTAGAAAGTGAACGCATAAGGGCGGAACAATTTAAGTTGCTACTTGATACTGAGCAAAAGCAAGTTGCTCTTAGAGAAAAGGAAATTGAAATTCAGCTTCGAAGTGAGGATGCTAAAATAATGGCCATGGATACTAGTGTCATGCCTCCAATTCAGGCAGAATACTTTATCGGTCTTCAGAAGGAAATCTTGGCAAAAAGAGCTAGCGGCGGTGGAAATCAAGTGTTTCTTTCTGAATGTACAATAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

355

Amino Acids

41.08

Weight (kDa)

6.45

Isoelectric Point (pI)

53.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 180 - 335 3.1e-14 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 688
AciI CCGC 4 cut(s) 52, 839, 1023, 1026
AcoI YGGCCR 1 cut(s) 939
AcsI RAATTY 2 cut(s) 19, 906
AcuI CTGAAG 1 cut(s) 977
AfaI GTAC 3 cut(s) 546, 784, 1057
AfiI CCNNNNNNNGG 3 cut(s) 526, 559, 693
AgsI TTSAA 7 cut(s) 19, 134, 350, 458, 628, 642, 905
AhdI GACNNNNNGTC 1 cut(s) 10
AhlI ACTAGT 1 cut(s) 950
AjuI GAANNNNNNNTTGG 4 cut(s) 608, 640, 989, 1021
AluBI AGCT 5 cut(s) 31, 227, 302, 913, 1019
AluI AGCT 5 cut(s) 31, 227, 302, 913, 1019
Alw21I GWGCWC 3 cut(s) 33, 121, 199
Alw26I GTCTC 3 cut(s) 146, 179, 761
Alw44I GTGCAC 1 cut(s) 195
AoxI GGCC 3 cut(s) 670, 695, 939
ApaLI GTGCAC 1 cut(s) 195
ApeKI GCWGC 2 cut(s) 204, 713
ApoI RAATTY 2 cut(s) 19, 906
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AspS9I GGNCC 1 cut(s) 671
AsuHPI GGTGA 1 cut(s) 383
AsuII TTCGAA 2 cut(s) 776, 916
AsuNHI GCTAGC 1 cut(s) 1019
BaeGI GKGCMC 1 cut(s) 199
BaeI ACNNNNGTAYC 2 cut(s) 939, 972
BalI TGGCCA 1 cut(s) 941
BanII GRGCYC 1 cut(s) 33
BbsI GAAGAC 2 cut(s) 252, 983
Bbv12I GWGCWC 3 cut(s) 33, 121, 199
BbvI GCAGC 2 cut(s) 216, 700
BccI CCATC 1 cut(s) 583
BciVI GTATCC 1 cut(s) 940
BclI TGATCA 2 cut(s) 304, 726
BcoDI GTCTC 3 cut(s) 146, 179, 761
BcuI ACTAGT 1 cut(s) 950
BfaI CTAG 3 cut(s) 201, 951, 1020
BfuAI ACCTGC 1 cut(s) 688
BfuI GTATCC 1 cut(s) 940
BisI GCNGC 3 cut(s) 205, 714, 1024
BlsI GCNGC 3 cut(s) 206, 715, 1025
BmcAI AGTACT 1 cut(s) 784
BmeRI GACNNNNNGTC 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 671
BmiI GGNNCC 2 cut(s) 575, 633
BmsI GCATC 2 cut(s) 451, 916
BmtI GCTAGC 1 cut(s) 1023
BpiI GAAGAC 2 cut(s) 252, 983
Bpu14I TTCGAA 2 cut(s) 776, 916
BsaJI CCNNGG 1 cut(s) 942
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 3 cut(s) 526, 559, 693
Bse3DI GCAATG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 942
BseGI GGATG 2 cut(s) 594, 931
BseLI CCNNNNNNNGG 3 cut(s) 526, 559, 693
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 2 cut(s) 18, 858
BseRI GAGGAG 1 cut(s) 54
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 2 cut(s) 216, 700
BsgI GTGCAG 1 cut(s) 666
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 3 cut(s) 672, 697, 941
BsiEI CGRYCG 1 cut(s) 240
BsiHKAI GWGCWC 3 cut(s) 33, 121, 199
BslI CCNNNNNNNGG 3 cut(s) 526, 559, 693
BsmAI GTCTC 3 cut(s) 146, 179, 761
BsnI GGCC 3 cut(s) 672, 697, 941
Bsp119I TTCGAA 2 cut(s) 776, 916
Bsp1286I GDGCHC 3 cut(s) 33, 121, 199
Bsp1407I TGTACA 1 cut(s) 1055
Bsp143I GATC 2 cut(s) 304, 726
Bsp19I CCATGG 1 cut(s) 942
BspACI CCGC 4 cut(s) 52, 839, 1023, 1026
BspANI GGCC 3 cut(s) 672, 697, 941
BspCNI CTCAG 2 cut(s) 19, 859
BspLI GGNNCC 2 cut(s) 575, 633
BspMI ACCTGC 1 cut(s) 688
BspOI GCTAGC 1 cut(s) 1023
BspT104I TTCGAA 2 cut(s) 776, 916
BsrDI GCAATG 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 1055
BssECI CCNNGG 1 cut(s) 942
BssMI GATC 2 cut(s) 304, 726
BssT1I CCWWGG 1 cut(s) 942
Bst4CI ACNGT 4 cut(s) 41, 238, 401, 424
Bst6I CTCTTC 2 cut(s) 144, 792
BstAUI TGTACA 1 cut(s) 1055
BstBI TTCGAA 2 cut(s) 776, 916
BstC8I GCNNGC 1 cut(s) 1021
BstDEI CTNAG 4 cut(s) 27, 789, 867, 887
BstDSI CCRYGG 1 cut(s) 942
BstENI CCTNNNNNAGG 1 cut(s) 691
BstF5I GGATG 2 cut(s) 594, 931
BstKTI GATC 2 cut(s) 307, 729
BstMAI GTCTC 3 cut(s) 146, 179, 761
BstMBI GATC 2 cut(s) 304, 726
BstMCI CGRYCG 1 cut(s) 240
BstMWI GCNNNNNNNGC 1 cut(s) 1016
BstSLI GKGCMC 1 cut(s) 199
BstV1I GCAGC 2 cut(s) 216, 700
BstV2I GAAGAC 2 cut(s) 252, 983
BsuI GTATCC 1 cut(s) 940
BsuRI GGCC 3 cut(s) 672, 697, 941
BtgI CCRYGG 1 cut(s) 942
BtsCI GGATG 2 cut(s) 594, 931
BtsIMutI CAGTG 2 cut(s) 24, 46
BveI ACCTGC 1 cut(s) 688
Cac8I GCNNGC 1 cut(s) 1021
Cfr13I GGNCC 1 cut(s) 671
Csp6I GTAC 3 cut(s) 545, 783, 1056
CviAII CATG 3 cut(s) 267, 943, 958
CviQI GTAC 3 cut(s) 545, 783, 1056
DdeI CTNAG 4 cut(s) 27, 789, 867, 887
DpnI GATC 2 cut(s) 306, 728
DpnII GATC 2 cut(s) 304, 726
DriI GACNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 939
Eam1104I CTCTTC 2 cut(s) 144, 792
Eam1105I GACNNNNNGTC 1 cut(s) 10
EarI CTCTTC 2 cut(s) 144, 792
EciI GGCGGA 1 cut(s) 854
Ecl136II GAGCTC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 942
Eco24I GRGCYC 1 cut(s) 33
Eco53kI GAGCTC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 977
EcoICRI GAGCTC 1 cut(s) 31
EcoNI CCTNNNNNAGG 1 cut(s) 691
EcoO109I RGGNCCY 1 cut(s) 671
EcoT14I CCWWGG 1 cut(s) 942
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 942
FaeI CATG 3 cut(s) 270, 946, 961
FatI CATG 3 cut(s) 266, 942, 957
FauNDI CATATG 1 cut(s) 73
FbaI TGATCA 2 cut(s) 304, 726
Fnu4HI GCNGC 3 cut(s) 205, 714, 1024
FokI GGATG 2 cut(s) 601, 938
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 3 cut(s) 205, 714, 1024
FspBI CTAG 3 cut(s) 201, 951, 1020
GluI GCNGC 3 cut(s) 205, 714, 1024
HaeIII GGCC 3 cut(s) 672, 697, 941
Hin1II CATG 3 cut(s) 270, 946, 961
HinfI GANTC 3 cut(s) 5, 88, 638
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 3 cut(s) 197, 374, 827
Hpy188I TCNGA 3 cut(s) 69, 996, 1051
Hpy188III TCNNGA 2 cut(s) 520, 635
Hpy8I GTNNAC 3 cut(s) 197, 374, 827
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 4 cut(s) 524, 662, 783, 991
HpyCH4III ACNGT 4 cut(s) 41, 238, 401, 424
HpyCH4V TGCA 7 cut(s) 141, 174, 197, 266, 683, 691, 716
HpyF10VI GCNNNNNNNGC 1 cut(s) 1016
HpyF3I CTNAG 4 cut(s) 27, 789, 867, 887
Hsp92II CATG 3 cut(s) 270, 946, 961
Ksp22I TGATCA 2 cut(s) 304, 726
Kzo9I GATC 2 cut(s) 304, 726
LmnI GCTCC 3 cut(s) 124, 299, 637
LpnPI CCDG 8 cut(s) 354, 533, 590, 648, 687, 693, 737, 956
Lsp1109I GCAGC 2 cut(s) 216, 700
LweI GCATC 2 cut(s) 451, 916
MaeI CTAG 3 cut(s) 201, 951, 1020
MalI GATC 2 cut(s) 306, 728
MboI GATC 2 cut(s) 304, 726
MboII GAAGA 9 cut(s) 146, 161, 179, 254, 257, 362, 665, 809, 983
MfeI CAATTG 1 cut(s) 699
MhlI GDGCHC 3 cut(s) 33, 121, 199
MlsI TGGCCA 1 cut(s) 941
MluNI TGGCCA 1 cut(s) 941
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 774
MnlI CCTC 7 cut(s) 72, 75, 496, 564, 687, 916, 972
Mox20I TGGCCA 1 cut(s) 941
MscI TGGCCA 1 cut(s) 941
MseI TTAA 2 cut(s) 392, 849
MslI CAYNNNNRTG 1 cut(s) 102
Msp20I TGGCCA 1 cut(s) 941
MunI CAATTG 1 cut(s) 699
MwoI GCNNNNNNNGC 1 cut(s) 1016
NcoI CCATGG 1 cut(s) 942
NdeI CATATG 1 cut(s) 73
NdeII GATC 2 cut(s) 304, 726
NheI GCTAGC 1 cut(s) 1019
NlaIII CATG 3 cut(s) 270, 946, 961
NlaIV GGNNCC 2 cut(s) 575, 633
NspV TTCGAA 2 cut(s) 776, 916
PfeI GAWTC 1 cut(s) 638
PkrI GCNGC 3 cut(s) 206, 715, 1025
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 575, 633
PspPI GGNCC 1 cut(s) 671
RsaI GTAC 3 cut(s) 546, 784, 1057
RsaNI GTAC 3 cut(s) 545, 783, 1056
RseI CAYNNNNRTG 1 cut(s) 102
SacI GAGCTC 1 cut(s) 33
SaqAI TTAA 2 cut(s) 392, 849
SatI GCNGC 3 cut(s) 205, 714, 1024
Sau3AI GATC 2 cut(s) 304, 726
Sau96I GGNCC 1 cut(s) 671
ScaI AGTACT 1 cut(s) 784
SchI GAGTC 1 cut(s) 97
SduI GDGCHC 3 cut(s) 33, 121, 199
SfaNI GCATC 2 cut(s) 451, 916
SfuI TTCGAA 2 cut(s) 776, 916
SmiMI CAYNNNNRTG 1 cut(s) 102
SpeI ACTAGT 1 cut(s) 950
SsiI CCGC 4 cut(s) 52, 839, 1023, 1026
SspMI CTAG 3 cut(s) 201, 951, 1020
SstI GAGCTC 1 cut(s) 33
StyI CCWWGG 1 cut(s) 942
TaaI ACNGT 4 cut(s) 41, 238, 401, 424
TaqI TCGA 5 cut(s) 8, 86, 240, 776, 916
TaqII GACCGA 1 cut(s) 977
TatI WGTACW 3 cut(s) 544, 782, 1055
TauI GCSGC 1 cut(s) 1026
TfiI GAWTC 1 cut(s) 638
Tru1I TTAA 2 cut(s) 392, 849
Tru9I TTAA 2 cut(s) 392, 849
TscAI CASTG 2 cut(s) 31, 46
TseI GCWGC 2 cut(s) 204, 713
TspDTI ATGAA 3 cut(s) 72, 162, 180
TspGWI ACGGA 2 cut(s) 391, 497
TspRI CASTG 2 cut(s) 31, 46
VneI GTGCAC 1 cut(s) 195
XagI CCTNNNNNAGG 1 cut(s) 691
XapI RAATTY 2 cut(s) 19, 906
XspI CTAG 3 cut(s) 201, 951, 1020
ZrmI AGTACT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.