Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000453.1

Orthogroup ID

OG0001050

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1993

Gene Structure 1993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000453.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggactcgacgtcattgaatttcactgacctcatcaacagcgaaacaaaccgcaatgaacctcctctgacatataatttcccgtcgagtcaatatcacaccaatggttctacttgtgctcctacgccatttgaagattgcacttatgaagagacacttactaatgaagattgcactaataaagagacaacttgtgtacctggcagcaagaaagcacaaggacaagctaacttcacggtcgaagaagacaaacttcttatatctgcatggctcaatgttagcatagatcaagtgaaaggagctgatcaaaagaaaaaacaattttggaaaagaattaccaaatactttgaagataacaagaagtggtctggtgaacggagtgaaaagtcattaacgaaccgttggtcaaaaatcaataccactgtgagtaagttttgtgggcatcattctcaaattgaacacttacagaaaagtgattacacggaacaagataagcagcagcttccaggtggagcgcggcttgcagaaggaggcatcccggaccgttctgggcagcgatcgaggtcggaggagatcgaggttgcacgttctgagcaacagccagacctgcaactgcaagcttctgggaaacgcggcaaccttgtcgccggcgactccacccgactgcccccctccggcaagccccgcctctccgtcgaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

234

Amino Acids

26.26

Weight (kDa)

6.14

Isoelectric Point (pI)

57.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001050)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29014 FvH4_5g31251 FvH4_6g30412 FvH4_7g13271
prunus_persica	Prupe.4G287300_v2.0.a1
pyrus_communis	pycom02g25100
rosa_laevigata	RLG00000014831 RLG00000016178 RLG00000018236 RLG00000023938 RLG00000029894 RLG00000033609
rosa_multiflora	Rmu_sc0000353.1_g000032 Rmu_sc0000453.1_g000001 Rmu_sc0000453.1_g000002 Rmu_sc0006593.1_g000011 Rmu_sc0008708.1_g000004 Rmu_sc0016357.1_g000001 Rmu_sc0020646.1_g000003 Rmu_sc0021515.1_g000001 Rmu_sc0022529.1_g000001 Rmu_ssc0000007.1_g000036
rosa_roxburghii	Rroxscaffold_2G00136660 Rroxscaffold_3G00259610 Rroxscaffold_4G00321120 Rroxscaffold_5G00360960 Rroxscaffold_6G00390120 Rroxscaffold_7G00185660 Rroxscaffold_7G00210600
rosa_rugosa	Rorug01G0079400 Rorug01G0079500 Rorug05G0091700
rosa_samantha	Rh1AG035100 Rh1AG206900 Rh1AG407300 Rh1AG407400 Rh1BG078000 Rh1CG021000 Rh1CG022600 Rh1CG094400 Rh1CG106900 Rh1CG191800 Rh1DG101300 Rh1DG115800 Rh2AG342500 Rh2AG565100 Rh2CG424000 Rh2CG463100 Rh2DG368700 Rh3CG298500 Rh3DG294400 Rh4CG123400 Rh5CG341800 Rh6AG163100 Rh6AG163200 Rh6DG128500 Rh7BG334100 Rh7DG175800 Rh7DG284000
rosa_wichuraiana	Rw5G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	615
AccII	CGCG	2 cut(s)	517, 633
AciI	CCGC	4 cut(s)	52, 517, 633, 685
AcsI	RAATTY	1 cut(s)	19
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	674
AgsI	TTSAA	4 cut(s)	19, 134, 350, 458
AhdI	GACNNNNNGTC	1 cut(s)	10
AjnI	CCWGG	2 cut(s)	199, 505
AluBI	AGCT	5 cut(s)	227, 302, 502, 620, 701
AluI	AGCT	5 cut(s)	227, 302, 502, 620, 701
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	2 cut(s)	146, 179
ApeKI	GCWGC	4 cut(s)	204, 496, 499, 553
ApoI	RAATTY	1 cut(s)	19
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	1 cut(s)	541
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	541
BaeI	ACNNNNGTAYC	2 cut(s)	180, 213
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	4 cut(s)	216, 508, 511, 565
BcgI	CGANNNNNNTGC	2 cut(s)	625, 659
BciT130I	CCWGG	2 cut(s)	201, 507
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	539
BcoDI	GTCTC	2 cut(s)	146, 179
BfuAI	ACCTGC	1 cut(s)	615
BisI	GCNGC	6 cut(s)	205, 497, 500, 518, 554, 634
BlsI	GCNGC	6 cut(s)	206, 498, 501, 519, 555, 635
Bme1390I	CCNGG	3 cut(s)	201, 507, 539
Bme18I	GGWCC	1 cut(s)	541
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	541
BmrFI	CCNGG	3 cut(s)	201, 507, 539
BmsI	GCATC	2 cut(s)	451, 543
BpiI	GAAGAC	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	539
BsaHI	GRCGYC	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bsc4I	CCNNNNNNNGG	1 cut(s)	674
Bse118I	RCCGGY	1 cut(s)	647
Bse3DI	GCAATG	1 cut(s)	61
BseBI	CCWGG	2 cut(s)	201, 507
BseGI	GGATG	1 cut(s)	534
BseLI	CCNNNNNNNGG	1 cut(s)	674
BseMI	GCAATG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	582
BseRI	GAGGAG	2 cut(s)	54, 584
BseXI	GCAGC	4 cut(s)	216, 508, 511, 565
Bsh1236I	CGCG	2 cut(s)	517, 633
Bsh1285I	CGRYCG	2 cut(s)	240, 560
BsiEI	CGRYCG	2 cut(s)	240, 560
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	3 cut(s)	539, 648, 675
BslI	CCNNNNNNNGG	1 cut(s)	674
BsmAI	GTCTC	2 cut(s)	146, 179
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	4 cut(s)	286, 304, 557, 573
BspACI	CCGC	4 cut(s)	52, 517, 633, 685
BspCNI	CTCAG	1 cut(s)	583
BspFNI	CGCG	2 cut(s)	517, 633
BspMI	ACCTGC	1 cut(s)	615
BsrDI	GCAATG	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	647
BssAI	RCCGGY	1 cut(s)	647
BssMI	GATC	4 cut(s)	286, 304, 557, 573
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	2 cut(s)	201, 507
Bst4CI	ACNGT	4 cut(s)	238, 401, 424, 545
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	4 cut(s)	522, 618, 649, 680
BstDEI	CTNAG	1 cut(s)	591
BstF5I	GGATG	1 cut(s)	534
BstFNI	CGCG	2 cut(s)	517, 633
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	4 cut(s)	289, 307, 560, 576
BstMAI	GTCTC	2 cut(s)	146, 179
BstMBI	GATC	4 cut(s)	286, 304, 557, 573
BstMCI	CGRYCG	2 cut(s)	240, 560
BstMWI	GCNNNNNNNGC	3 cut(s)	521, 607, 684
BstNI	CCWGG	2 cut(s)	201, 507
BstSCI	CCNGG	3 cut(s)	199, 505, 537
BstUI	CGCG	2 cut(s)	517, 633
BstV1I	GCAGC	4 cut(s)	216, 508, 511, 565
BstV2I	GAAGAC	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	534
BtsIMutI	CAGTG	2 cut(s)	24, 420
BveI	ACCTGC	1 cut(s)	615
Cac8I	GCNNGC	4 cut(s)	522, 618, 649, 680
CfoI	GCGC	1 cut(s)	517
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	1 cut(s)	541
CpoI	CGGWCCG	1 cut(s)	541
Csp6I	GTAC	1 cut(s)	197
CspI	CGGWCCG	1 cut(s)	541
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	9 cut(s)	227, 271, 302, 502, 520, 601, 620, 682, 701
CviKI_1	RGCY	9 cut(s)	227, 271, 302, 502, 520, 601, 620, 682, 701
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	1 cut(s)	591
DpnI	GATC	4 cut(s)	288, 306, 559, 575
DpnII	GATC	4 cut(s)	286, 304, 557, 573
DriI	GACNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	144
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	541
EcoRII	CCWGG	2 cut(s)	199, 505
FaeI	CATG	1 cut(s)	270
FaiI	YATR	6 cut(s)	73, 75, 147, 260, 268, 284
FalI	AAGNNNNNCTT	4 cut(s)	141, 173, 237, 269
FatI	CATG	1 cut(s)	266
FauI	CCCGC	1 cut(s)	692
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	6 cut(s)	205, 497, 500, 518, 554, 634
FokI	GGATG	1 cut(s)	521
Fsp4HI	GCNGC	6 cut(s)	205, 497, 500, 518, 554, 634
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	6 cut(s)	205, 497, 500, 518, 554, 634
HapII	CCGG	3 cut(s)	539, 648, 675
HhaI	GCGC	1 cut(s)	517
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	270
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HindIII	AAGCTT	2 cut(s)	618, 699
HinfI	GANTC	3 cut(s)	5, 88, 653
HpaII	CCGG	3 cut(s)	539, 648, 675
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	2 cut(s)	197, 374
Hpy188I	TCNGA	3 cut(s)	69, 568, 592
Hpy8I	GTNNAC	2 cut(s)	197, 374
Hpy99I	CGWCG	3 cut(s)	13, 88, 698
HpyAV	CCTTC	1 cut(s)	521
HpyCH4III	ACNGT	4 cut(s)	238, 401, 424, 545
HpyCH4IV	ACGT	2 cut(s)	11, 586
HpyCH4V	TGCA	7 cut(s)	141, 174, 266, 524, 584, 610, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	521, 607, 684
HpyF3I	CTNAG	1 cut(s)	591
HpySE526I	ACGT	2 cut(s)	11, 586
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	270
HspAI	GCGC	1 cut(s)	515
KroI	GCCGGC	1 cut(s)	647
KroNI	GCCGGC	1 cut(s)	649
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	286, 304, 557, 573
LmnI	GCTCC	3 cut(s)	124, 299, 512
Lsp1109I	GCAGC	4 cut(s)	216, 508, 511, 565
LweI	GCATC	2 cut(s)	451, 543
MaeII	ACGT	2 cut(s)	11, 586
MalI	GATC	4 cut(s)	288, 306, 559, 575
MboI	GATC	4 cut(s)	286, 304, 557, 573
MboII	GAAGA	6 cut(s)	146, 161, 179, 254, 257, 362
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	5 cut(s)	19, 76, 320, 333, 453
MlyI	GAGTC	2 cut(s)	97, 647
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	9 cut(s)	41, 72, 75, 524, 555, 562, 571, 682, 698
MreI	CGCCGGCG	1 cut(s)	647
MroNI	GCCGGC	1 cut(s)	647
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	1 cut(s)	102
MspI	CCGG	3 cut(s)	539, 648, 675
MspR9I	CCNGG	3 cut(s)	201, 507, 539
MvaI	CCWGG	2 cut(s)	201, 507
MvnI	CGCG	2 cut(s)	517, 633
MwoI	GCNNNNNNNGC	3 cut(s)	521, 607, 684
NaeI	GCCGGC	1 cut(s)	649
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	4 cut(s)	286, 304, 557, 573
NgoMIV	GCCGGC	1 cut(s)	647
NlaIII	CATG	1 cut(s)	270
PdiI	GCCGGC	1 cut(s)	649
PfoI	TCCNGGA	1 cut(s)	537
PkrI	GCNGC	6 cut(s)	206, 498, 501, 519, 555, 635
Ple19I	CGATCG	1 cut(s)	560
PleI	GAGTC	2 cut(s)	96, 647
PpsI	GAGTC	2 cut(s)	96, 647
Psp6I	CCWGG	2 cut(s)	199, 505
PspGI	CCWGG	2 cut(s)	199, 505
PspPI	GGNCC	1 cut(s)	541
PvuI	CGATCG	1 cut(s)	560
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	102
Rsr2I	CGGWCCG	1 cut(s)	541
RsrII	CGGWCCG	1 cut(s)	541
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	6 cut(s)	205, 497, 500, 518, 554, 634
Sau3AI	GATC	4 cut(s)	286, 304, 557, 573
Sau96I	GGNCC	1 cut(s)	541
SchI	GAGTC	2 cut(s)	97, 647
ScrFI	CCNGG	3 cut(s)	201, 507, 539
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	2 cut(s)	451, 543
SgrAI	CRCCGGYG	1 cut(s)	647
SinI	GGWCC	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	5 cut(s)	19, 76, 320, 333, 453
SsiI	CCGC	4 cut(s)	52, 517, 633, 685
StyD4I	CCNGG	3 cut(s)	199, 505, 537
TaaI	ACNGT	4 cut(s)	238, 401, 424, 545
TaiI	ACGT	2 cut(s)	14, 589
TaqI	TCGA	6 cut(s)	8, 86, 240, 560, 576, 696
TasI	AATT	5 cut(s)	19, 76, 320, 333, 453
TauI	GCSGC	2 cut(s)	520, 636
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	2 cut(s)	31, 427
TseI	GCWGC	4 cut(s)	204, 496, 499, 553
TspDTI	ATGAA	3 cut(s)	72, 162, 180
TspGWI	ACGGA	3 cut(s)	391, 497, 682
TspRI	CASTG	2 cut(s)	31, 427
VpaK11BI	GGWCC	1 cut(s)	541
XapI	RAATTY	1 cut(s)	19
ZraI	GACGTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.