Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001050

Physical Location & Seq

Genomic Coordinates Forward (+)

61107504 .. 61110339

Gene Structure 2836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGTAGCGCAGATGGCTTGGACGCCATTGAATTTCACTAATCTCCTCAACAATGAATCAACCCTCAATGACCTCAATAAACCACATTTGACATACAATTTCCCGGCAAGTCGGTATCATTCACCCTATGAAGAGACACCTACTAGTGAAGTTTGCACTTATGAAGAGACACCTACTAGTGAAGTTTGCACTTACGAAGAGACGCCACGTGCACCTAACAAAGCAAGAAAGCACAAAGACAAGCCAACTTCACAATCGAAGAAGACAAACTTCTTGTATCTACATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

96

Amino Acids

11.1

Weight (kDa)

6.4

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001050)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29014 FvH4_5g31251 FvH4_6g30412 FvH4_7g13271
prunus_persica	Prupe.4G287300_v2.0.a1
pyrus_communis	pycom02g25100
rosa_laevigata	RLG00000014831 RLG00000016178 RLG00000018236 RLG00000023938 RLG00000029894 RLG00000033609
rosa_multiflora	Rmu_sc0000353.1_g000032 Rmu_sc0000453.1_g000001 Rmu_sc0000453.1_g000002 Rmu_sc0006593.1_g000011 Rmu_sc0008708.1_g000004 Rmu_sc0016357.1_g000001 Rmu_sc0020646.1_g000003 Rmu_sc0021515.1_g000001 Rmu_sc0022529.1_g000001 Rmu_ssc0000007.1_g000036
rosa_roxburghii	Rroxscaffold_2G00136660 Rroxscaffold_3G00259610 Rroxscaffold_4G00321120 Rroxscaffold_5G00360960 Rroxscaffold_6G00390120 Rroxscaffold_7G00185660 Rroxscaffold_7G00210600
rosa_rugosa	Rorug01G0079400 Rorug01G0079500 Rorug05G0091700
rosa_samantha	Rh1AG035100 Rh1AG206900 Rh1AG407300 Rh1AG407400 Rh1BG078000 Rh1CG021000 Rh1CG022600 Rh1CG094400 Rh1CG106900 Rh1CG191800 Rh1DG101300 Rh1DG115800 Rh2AG342500 Rh2AG565100 Rh2CG424000 Rh2CG463100 Rh2DG368700 Rh3CG298500 Rh3DG294400 Rh4CG123400 Rh5CG341800 Rh6AG163100 Rh6AG163200 Rh6DG128500 Rh7BG334100 Rh7DG175800 Rh7DG284000
rosa_wichuraiana	Rw5G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	31
AcvI	CACGTG	1 cut(s)	209
AcyI	GRCGYC	2 cut(s)	23, 203
AgsI	TTSAA	1 cut(s)	31
AhlI	ACTAGT	2 cut(s)	143, 176
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	3 cut(s)	128, 161, 194
Alw44I	GTGCAC	1 cut(s)	210
ApaLI	GTGCAC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	10
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	114
BaeGI	GKGCMC	1 cut(s)	214
BbrPI	CACGTG	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	214
BccI	CCATC	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	3 cut(s)	128, 161, 194
BcuI	ACTAGT	2 cut(s)	143, 176
BfaI	CTAG	2 cut(s)	144, 177
Bme1390I	CCNGG	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	209
BsaHI	GRCGYC	2 cut(s)	23, 203
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	104
BsmAI	GTCTC	3 cut(s)	128, 161, 194
BsmBI	CGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	214
BssNI	GRCGYC	2 cut(s)	23, 203
Bst6I	CTCTTC	3 cut(s)	126, 159, 192
BstACI	GRCGYC	2 cut(s)	23, 203
BstBAI	YACGTR	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	10
BstMAI	GTCTC	3 cut(s)	128, 161, 194
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	269
CfoI	GCGC	1 cut(s)	10
CseI	GACGC	2 cut(s)	31, 211
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	3 cut(s)	17, 244, 288
CviKI_1	RGCY	3 cut(s)	17, 244, 288
Eam1104I	CTCTTC	3 cut(s)	126, 159, 192
EarI	CTCTTC	3 cut(s)	126, 159, 192
Eco72I	CACGTG	1 cut(s)	209
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	1 cut(s)	287
FaiI	YATR	4 cut(s)	94, 129, 162, 285
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FatI	CATG	1 cut(s)	283
FspBI	CTAG	2 cut(s)	144, 177
GlaI	GCGC	1 cut(s)	9
HapII	CCGG	1 cut(s)	104
HgaI	GACGC	2 cut(s)	31, 211
HhaI	GCGC	1 cut(s)	10
Hin1I	GRCGYC	2 cut(s)	23, 203
Hin1II	CATG	1 cut(s)	287
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	1 cut(s)	114
Hpy166II	GTNNAC	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	3 cut(s)	156, 189, 212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	208
Hsp92I	GRCGYC	2 cut(s)	23, 203
Hsp92II	CATG	1 cut(s)	287
HspAI	GCGC	1 cut(s)	8
LpnPI	CCDG	1 cut(s)	117
MaeI	CTAG	2 cut(s)	144, 177
MaeII	ACGT	1 cut(s)	208
MboII	GAAGA	5 cut(s)	143, 176, 209, 271, 274
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	2 cut(s)	31, 97
MnlI	CCTC	3 cut(s)	56, 74, 83
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	14
NciI	CCSGG	1 cut(s)	104
NlaIII	CATG	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	56
PmaCI	CACGTG	1 cut(s)	209
PmlI	CACGTG	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	209
PspCI	CACGTG	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	5 cut(s)	75, 142, 175, 211, 217
SpeI	ACTAGT	2 cut(s)	143, 176
Sse9I	AATT	2 cut(s)	31, 97
SspMI	CTAG	2 cut(s)	144, 177
StyD4I	CCNGG	1 cut(s)	102
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	257
TasI	AATT	2 cut(s)	31, 97
TfiI	GAWTC	1 cut(s)	56
TspDTI	ATGAA	3 cut(s)	69, 144, 177
VneI	GTGCAC	1 cut(s)	210
XapI	RAATTY	1 cut(s)	31
XspI	CTAG	2 cut(s)	144, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.