Rh3CG298500

No apical meristem-associated C-terminal domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
30695447 .. 30725906
30460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG298500.1

Sequence Viewer

Length: 333 bp
ATGGCTTCGATGCCATTGAATTTCACTAACCTCCTTAACAATGAATTAGTCCTCAATGACCTTAATGAACCACACGATTTCCCGACGAGTCAGTATCAGTGCAATGGTTCTACTTATGCTCATTCACCATATGAAGATTTCATTTATGAAGAGACTCCTACAAATGAAGTTTACACTTACGAAGAGACACCACGTGCACCTAGCAGCAAGAAATCACAAAGACAAGCTAACTTCACCATCGAAGAAGACAAACTTCTTGTATCTGCATGGCTCAATATTGGTTTAGACCAGCATTCTGTTCGCAACAGCCAGTTTCTTGCTAGTCCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

12.62

Weight (kDa)

4.47

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 19
AcvI CACGTG 1 cut(s) 194
AdeI CACNNNGTG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 19
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 2 cut(s) 146, 179
Alw44I GTGCAC 1 cut(s) 195
ApaLI GTGCAC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 19
AsuHPI GGTGA 2 cut(s) 117, 226
BaeGI GKGCMC 1 cut(s) 199
BbrPI CACGTG 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 216
BccI CCATC 1 cut(s) 245
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BcoDI GTCTC 2 cut(s) 146, 179
BfaI CTAG 2 cut(s) 201, 321
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 252
BsaAI YACGTR 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 109
BseMI GCAATG 1 cut(s) 109
BseNI ACTGG 1 cut(s) 310
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 199
BsmAI GTCTC 2 cut(s) 146, 179
BsmI GAATGC 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 109
BsrI ACTGG 1 cut(s) 310
Bst6I CTCTTC 2 cut(s) 144, 177
BstBAI YACGTR 1 cut(s) 194
BstMAI GTCTC 2 cut(s) 146, 179
BstSLI GKGCMC 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 216
BstV2I GAAGAC 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 104
CviAII CATG 1 cut(s) 267
CviJI RGCY 4 cut(s) 5, 227, 271, 309
CviKI_1 RGCY 4 cut(s) 5, 227, 271, 309
DraIII CACNNNGTG 1 cut(s) 194
Eam1104I CTCTTC 2 cut(s) 144, 177
EarI CTCTTC 2 cut(s) 144, 177
Eco72I CACGTG 1 cut(s) 194
FaeI CATG 1 cut(s) 270
FaiI YATR 5 cut(s) 117, 130, 132, 147, 268
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FatI CATG 1 cut(s) 266
FauNDI CATATG 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 2 cut(s) 201, 321
GluI GCNGC 1 cut(s) 205
Hin1II CATG 1 cut(s) 270
HinfI GANTC 2 cut(s) 88, 154
HphI GGTGA 2 cut(s) 117, 226
Hpy166II GTNNAC 2 cut(s) 172, 197
Hpy188III TCNNGA 2 cut(s) 82, 326
Hpy8I GTNNAC 2 cut(s) 172, 197
Hpy99I CGWCG 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 3 cut(s) 102, 197, 266
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 1 cut(s) 270
LpnPI CCDG 2 cut(s) 302, 323
Lsp1109I GCAGC 1 cut(s) 216
MaeI CTAG 2 cut(s) 201, 321
MaeII ACGT 1 cut(s) 193
MboII GAAGA 5 cut(s) 146, 161, 194, 254, 257
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 2 cut(s) 19, 44
MlyI GAGTC 2 cut(s) 97, 148
MnlI CCTC 2 cut(s) 41, 62
MseI TTAA 2 cut(s) 36, 63
Mva1269I GAATGC 1 cut(s) 292
NdeI CATATG 1 cut(s) 130
NlaIII CATG 1 cut(s) 270
PctI GAATGC 1 cut(s) 292
PkrI GCNGC 1 cut(s) 206
PleI GAGTC 2 cut(s) 96, 148
PmaCI CACGTG 1 cut(s) 194
PmlI CACGTG 1 cut(s) 194
PpsI GAGTC 2 cut(s) 96, 148
Ppu21I YACGTR 1 cut(s) 194
PspCI CACGTG 1 cut(s) 194
SaqAI TTAA 2 cut(s) 36, 63
SatI GCNGC 1 cut(s) 205
SchI GAGTC 2 cut(s) 97, 148
SduI GDGCHC 1 cut(s) 199
SetI ASST 5 cut(s) 33, 63, 196, 202, 229
Sse9I AATT 2 cut(s) 19, 44
SspI AATATT 1 cut(s) 277
SspMI CTAG 2 cut(s) 201, 321
TaiI ACGT 1 cut(s) 196
TaqI TCGA 2 cut(s) 8, 240
TasI AATT 2 cut(s) 19, 44
Tru1I TTAA 2 cut(s) 36, 63
Tru9I TTAA 2 cut(s) 36, 63
TscAI CASTG 1 cut(s) 104
TseI GCWGC 1 cut(s) 204
TspDTI ATGAA 6 cut(s) 57, 81, 130, 147, 162, 180
TspRI CASTG 1 cut(s) 104
VneI GTGCAC 1 cut(s) 195
XapI RAATTY 1 cut(s) 19
XspI CTAG 2 cut(s) 201, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.