Rh5CG341800

No apical meristem-associated C-terminal domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
39151396 .. 39151701
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG341800.1

Sequence Viewer

Length: 258 bp
ATGGATTCTGCGCCATTGAATTTCACTAACCTCCTCAACAACGAATCAGCCCTCAATGACCTCAATGAACCACATCTGACATACGATTTCCCGGCAAATTGCATTTATGAAGAGACACCTACAAATGAAGTTTACACTTATGAAGAGATGCCACATGCAACTAGCAGCAAGAAAGCACAAAGACAAGACAAAGACAGGCCAACTTCACAATCGAAGAAGACAAACTTCTTGTATCTGCATGGCTCAATATTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.72

Weight (kDa)

4.95

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 19
AgsI TTSAA 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 107
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 1 cut(s) 13
AsuC2I CCSGG 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 224
BbvI GCAGC 1 cut(s) 177
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 1 cut(s) 162
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 177
BshFI GGCC 1 cut(s) 199
BsiSI CCGG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 1 cut(s) 199
BspANI GGCC 1 cut(s) 199
Bst6I CTCTTC 2 cut(s) 105, 138
BstDEI CTNAG 1 cut(s) 255
BstHHI GCGC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 199
CfoI GCGC 1 cut(s) 13
CviAII CATG 2 cut(s) 155, 239
CviJI RGCY 4 cut(s) 50, 199, 243, 254
CviKI_1 RGCY 4 cut(s) 50, 199, 243, 254
DdeI CTNAG 1 cut(s) 255
Eam1104I CTCTTC 2 cut(s) 105, 138
EarI CTCTTC 2 cut(s) 105, 138
FaeI CATG 2 cut(s) 158, 242
FaiI YATR 5 cut(s) 82, 108, 141, 156, 240
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FatI CATG 2 cut(s) 154, 238
Fnu4HI GCNGC 1 cut(s) 166
Fsp4HI GCNGC 1 cut(s) 166
FspBI CTAG 1 cut(s) 162
GlaI GCGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 166
HaeIII GGCC 1 cut(s) 199
HapII CCGG 1 cut(s) 92
HhaI GCGC 1 cut(s) 13
Hin1II CATG 2 cut(s) 158, 242
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HinfI GANTC 2 cut(s) 5, 44
HpaII CCGG 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 78
Hpy8I GTNNAC 1 cut(s) 133
HpyCH4V TGCA 3 cut(s) 102, 158, 238
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 2 cut(s) 158, 242
HspAI GCGC 1 cut(s) 11
LpnPI CCDG 2 cut(s) 105, 181
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 138
MaeI CTAG 1 cut(s) 162
MboII GAAGA 4 cut(s) 122, 155, 226, 229
MluCI AATT 2 cut(s) 19, 97
MnlI CCTC 4 cut(s) 41, 44, 62, 71
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 92
NciI CCSGG 1 cut(s) 92
NlaIII CATG 2 cut(s) 158, 242
NspI RCATGY 1 cut(s) 158
PfeI GAWTC 2 cut(s) 5, 44
PkrI GCNGC 1 cut(s) 167
SatI GCNGC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 92
SetI ASST 3 cut(s) 33, 63, 121
SfaNI GCATC 1 cut(s) 138
SgeI CNNG 9 cut(s) 103, 104, 167, 174, 181, 197, 208, 241, 251
Sse9I AATT 2 cut(s) 19, 97
SspI AATATT 1 cut(s) 249
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 90
TaqI TCGA 1 cut(s) 212
TasI AATT 2 cut(s) 19, 97
TfiI GAWTC 2 cut(s) 5, 44
TseI GCWGC 1 cut(s) 165
TspDTI ATGAA 4 cut(s) 81, 123, 141, 156
XapI RAATTY 1 cut(s) 19
XceI RCATGY 1 cut(s) 158
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.