Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001044

Physical Location & Seq

Genomic Coordinates Forward (+)

47110076 .. 47117416

Gene Structure 7341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1199800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGACTCGAGAAGTTGGGAAAAACTTCTCCAAGAAGGCCCGTTTCATGCTTTCCCATGATGTGACGGTTCCGGGCGCCAATTCGTACAACCAATCCTTCGCCTTTTCCAAGAGAGAAAAAGGGAAGGCTTTCATCTTCAAAATACTCCCATCGACATTGACGGGGGTCATGCTCGAACACACCACCTCGAATTCTTTCAAGTGTTTGTTAGGATCTTCCATGGACAACCCATGGTACTTCGGAATGTGGTGTAACAAGCTTGACTTCAATTCAAATTCTTCTATCTTTCCTCGGGCTGCTGCGGGGTATTGGATACATAGAGGCGCAGCATTGTCCAATCCCGAGGTTTTATTGTCAAACCCGAGGAAAGACAAAAGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.35

Weight (kDa)

10.01

Isoelectric Point (pI)

17.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001044)

Species	Orthologous Gene IDs
malus_domestica	MD00G1199800.v1.1 MD12G1009800.v1.1
pyrus_communis	pycom01g00360 pycom01g00370 pycom01g01360 pycom01g01490 pycom01g01720 pycom01g01940 pycom01g03060 pycom01g03070 pycom01g03730 pycom01g04350 pycom04g07860 pycom1128g00090 pycom11g16010 pycom12409g00010 pycom12420g00090 pycom12424g00140 pycom12426g00050 pycom12426g00220 pycom12426g00260 pycom12426g00340 pycom12426g00380 pycom12426g00390 pycom12426g00590 pycom12480g00050 pycom12529g00020 pycom12561g00060 pycom1256g00150 pycom1256g00260 pycom12659g00120 pycom12661g00140 pycom12g09700 pycom1341g00110 pycom13g24360 pycom13g25370 pycom13g25380 pycom13g25420 pycom13g25460 pycom13g25840 pycom13g26320 pycom13g28310 pycom13g28320 pycom1654g00080 pycom1654g00130 pycom1654g00140 pycom17g16570 pycom17g16660 pycom17g18490 pycom2238g00030 pycom2246g00120 pycom436g00480 pycom436g00510 pycom576g00010 pycom57g00060 pycom808g00560 pycom808g00650 pycom992g00010
rosa_chinensis	RchiOBHm_Chr0c04g0497971 RchiOBHm_Chr2g0129591 RchiOBHm_Chr7g0215791

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AciI	CCGC	1 cut(s)	302
AclWI	GGATC	1 cut(s)	220
AcsI	RAATTY	3 cut(s)	190, 274, 378
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	2 cut(s)	86, 236
AgsI	TTSAA	4 cut(s)	139, 199, 268, 273
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
AlwI	GGATC	1 cut(s)	220
Ama87I	CYCGRG	4 cut(s)	6, 291, 341, 361
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	3 cut(s)	296, 299, 326
ApoI	RAATTY	3 cut(s)	190, 274, 378
Asp700I	GAANNNNTTC	3 cut(s)	23, 128, 194
AspLEI	GCGC	2 cut(s)	77, 326
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	72
AvaI	CYCGRG	4 cut(s)	6, 291, 341, 361
BanI	GGYRCC	1 cut(s)	74
BbvI	GCAGC	3 cut(s)	283, 286, 338
BccI	CCATC	1 cut(s)	157
BciVI	GTATCC	1 cut(s)	306
BcnI	CCSGG	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	78
BfuI	GTATCC	1 cut(s)	306
BisI	GCNGC	3 cut(s)	297, 300, 327
BlsI	GCNGC	3 cut(s)	298, 301, 328
Bme1390I	CCNGG	1 cut(s)	72
BmeT110I	CYCGRG	4 cut(s)	6, 291, 341, 361
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	69, 76
BmrFI	CCNGG	1 cut(s)	72
BoxI	GACNNNNGTC	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	5 cut(s)	219, 230, 290, 342, 362
BseDI	CCNNGG	5 cut(s)	219, 230, 290, 342, 362
BseXI	GCAGC	3 cut(s)	283, 286, 338
BshFI	GGCC	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	74
BsiHKCI	CYCGRG	4 cut(s)	6, 291, 341, 361
BsiSI	CCGG	1 cut(s)	71
BsnI	GGCC	1 cut(s)	38
BsoBI	CYCGRG	4 cut(s)	6, 291, 341, 361
Bsp143I	GATC	1 cut(s)	212
Bsp19I	CCATGG	2 cut(s)	219, 230
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	1 cut(s)	38
BspLI	GGNNCC	2 cut(s)	69, 76
BspPI	GGATC	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	74
BssECI	CCNNGG	5 cut(s)	219, 230, 290, 342, 362
BssMI	GATC	1 cut(s)	212
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	2 cut(s)	219, 230
Bst4CI	ACNGT	1 cut(s)	67
BstACI	GRCGYC	1 cut(s)	75
BstDSI	CCRYGG	2 cut(s)	219, 230
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	77, 326
BstKTI	GATC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	212
BstPAI	GACNNNNGTC	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	70
BstV1I	GCAGC	3 cut(s)	283, 286, 338
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuI	GTATCC	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	38
BtgI	CCRYGG	2 cut(s)	219, 230
CfoI	GCGC	2 cut(s)	77, 326
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	85, 235
CviAII	CATG	5 cut(s)	46, 56, 169, 220, 231
CviJI	RGCY	4 cut(s)	38, 128, 259, 296
CviKI_1	RGCY	4 cut(s)	38, 128, 259, 296
CviQI	GTAC	2 cut(s)	85, 235
DinI	GGCGCC	1 cut(s)	76
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
Eco130I	CCWWGG	2 cut(s)	219, 230
Eco88I	CYCGRG	4 cut(s)	6, 291, 341, 361
EcoRI	GAATTC	1 cut(s)	190
EcoT14I	CCWWGG	2 cut(s)	219, 230
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
ErhI	CCWWGG	2 cut(s)	219, 230
FaeI	CATG	5 cut(s)	49, 59, 172, 223, 234
FaiI	YATR	6 cut(s)	47, 57, 170, 221, 232, 318
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FatI	CATG	5 cut(s)	45, 55, 168, 219, 230
FauI	CCCGC	1 cut(s)	295
Fnu4HI	GCNGC	3 cut(s)	297, 300, 327
Fsp4HI	GCNGC	3 cut(s)	297, 300, 327
GlaI	GCGC	2 cut(s)	76, 325
GluI	GCNGC	3 cut(s)	297, 300, 327
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	2 cut(s)	77, 326
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	5 cut(s)	49, 59, 172, 223, 234
Hin6I	GCGC	2 cut(s)	75, 324
HinP1I	GCGC	2 cut(s)	75, 324
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	242
Hpy188III	TCNNGA	2 cut(s)	8, 341
HpyAV	CCTTC	3 cut(s)	28, 106, 118
HpyCH4III	ACNGT	1 cut(s)	67
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	5 cut(s)	49, 59, 172, 223, 234
HspAI	GCGC	2 cut(s)	75, 324
KasI	GGCGCC	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	212
LpnPI	CCDG	1 cut(s)	84
Lsp1109I	GCAGC	3 cut(s)	283, 286, 338
MaeIII	GTNAC	2 cut(s)	61, 251
MalI	GATC	1 cut(s)	214
MboI	GATC	1 cut(s)	212
MboII	GAAGA	3 cut(s)	127, 207, 270
MflI	RGATCY	1 cut(s)	212
MluCI	AATT	5 cut(s)	79, 190, 268, 274, 378
Mly113I	GGCGCC	1 cut(s)	75
MnlI	CCTC	5 cut(s)	196, 300, 314, 337, 357
MroXI	GAANNNNTTC	3 cut(s)	23, 128, 194
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	72
NarI	GGCGCC	1 cut(s)	75
NciI	CCSGG	1 cut(s)	72
NcoI	CCATGG	2 cut(s)	219, 230
NdeII	GATC	1 cut(s)	212
NlaIII	CATG	5 cut(s)	49, 59, 172, 223, 234
NlaIV	GGNNCC	2 cut(s)	69, 76
NmuCI	GTSAC	1 cut(s)	61
PaeR7I	CTCGAG	1 cut(s)	6
PdmI	GAANNNNTTC	3 cut(s)	23, 128, 194
PkrI	GCNGC	3 cut(s)	298, 301, 328
PluTI	GGCGCC	1 cut(s)	78
PshAI	GACNNNNGTC	1 cut(s)	164
PspN4I	GGNNCC	2 cut(s)	69, 76
PspPI	GGNCC	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	2 cut(s)	86, 236
RsaNI	GTAC	2 cut(s)	85, 235
SatI	GCNGC	3 cut(s)	297, 300, 327
Sau3AI	GATC	1 cut(s)	212
Sau96I	GGNCC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	3 cut(s)	188, 261, 348
SfoI	GGCGCC	1 cut(s)	76
Sfr274I	CTCGAG	1 cut(s)	6
SlaI	CTCGAG	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	5 cut(s)	79, 190, 268, 274, 378
SsiI	CCGC	1 cut(s)	302
SspDI	GGCGCC	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	2 cut(s)	219, 230
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	4 cut(s)	7, 152, 174, 188
TasI	AATT	5 cut(s)	79, 190, 268, 274, 378
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	3 cut(s)	296, 299, 326
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	34, 121
XapI	RAATTY	3 cut(s)	190, 274, 378
XhoI	CTCGAG	1 cut(s)	6
XmnI	GAANNNNTTC	3 cut(s)	23, 128, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.