pycom2246g00120

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00002246
Physical Location & Seq
Reverse (-)
19842 .. 20186
345 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom2246g00120.1

Sequence Viewer

Length: 345 bp
ATGGCAAAGAATTCCTCCTCCTTGTCGTGGCCTTGCATTGGCCCAAATCCTTCATTTTTGCGCTCTATGGCCTTAGTGATGGTTGTTTCCAGGGCGTCATCGTTCAATTCTTCAAGGTATACCTGCGCCAAAGAATCGATAACATCAATGGAAAAACAAGAATGGTCATCAACGGGATATCTCATAGTTTCAGAAATATTAAAATCAATCACTTCCCCATCGAATTCCATTGTCAAGGTGCCTTTGTATACATCAATCTTCGTTCGGGCCGTCTTCATGAATGGCCTCCCAAGAAGAATCGGCAAGGATGGAGCATGGGTGGTTTCCTCCATTTCAAGGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.5

Weight (kDa)

10.11

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 238
AccI GTMKAC 2 cut(s) 119, 248
AcsI RAATTY 2 cut(s) 10, 223
AcyI GRCGYC 1 cut(s) 95
AfiI CCNNNNNNNGG 3 cut(s) 27, 38, 336
AgsI TTSAA 3 cut(s) 106, 114, 336
AjnI CCWGG 1 cut(s) 89
AoxI GGCC 5 cut(s) 29, 40, 69, 267, 283
ApoI RAATTY 2 cut(s) 10, 223
AspLEI GCGC 2 cut(s) 63, 128
AspS9I GGNCC 2 cut(s) 41, 267
BanI GGYRCC 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 265
BccI CCATC 3 cut(s) 73, 226, 302
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 41, 267
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 91
BpiI GAAGAC 1 cut(s) 265
Bsa29I ATCGAT 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 38, 336
BseBI CCWGG 1 cut(s) 91
BseCI ATCGAT 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 3 cut(s) 27, 38, 336
BseRI GAGGAG 1 cut(s) 7
BshFI GGCC 5 cut(s) 31, 42, 71, 269, 285
BshNI GGYRCC 1 cut(s) 238
BshVI ATCGAT 1 cut(s) 137
BslI CCNNNNNNNGG 3 cut(s) 27, 38, 336
BsnI GGCC 5 cut(s) 31, 42, 71, 269, 285
BspANI GGCC 5 cut(s) 31, 42, 71, 269, 285
BspDI ATCGAT 1 cut(s) 137
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 240
BspMI ACCTGC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 90
BssNAI GTATAC 2 cut(s) 120, 249
BssNI GRCGYC 1 cut(s) 95
Bst1107I GTATAC 2 cut(s) 120, 249
Bst2UI CCWGG 1 cut(s) 91
BstACI GRCGYC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 73
BstF5I GGATG 1 cut(s) 313
BstHHI GCGC 2 cut(s) 63, 128
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 265
BstZ17I GTATAC 2 cut(s) 120, 249
Bsu15I ATCGAT 1 cut(s) 137
BsuRI GGCC 5 cut(s) 31, 42, 71, 269, 285
BsuTUI ATCGAT 1 cut(s) 137
BtsCI GGATG 1 cut(s) 313
BveI ACCTGC 1 cut(s) 131
CciI TCATGA 1 cut(s) 276
CfoI GCGC 2 cut(s) 63, 128
Cfr13I GGNCC 2 cut(s) 41, 267
ClaI ATCGAT 1 cut(s) 137
CseI GACGC 1 cut(s) 84
CviAII CATG 2 cut(s) 277, 315
CviJI RGCY 5 cut(s) 31, 42, 71, 269, 285
CviKI_1 RGCY 5 cut(s) 31, 42, 71, 269, 285
DdeI CTNAG 1 cut(s) 73
Eco32I GATATC 1 cut(s) 179
EcoRI GAATTC 2 cut(s) 10, 223
EcoRII CCWGG 1 cut(s) 89
EcoRV GATATC 1 cut(s) 179
FaeI CATG 2 cut(s) 280, 318
FaiI YATR 7 cut(s) 68, 120, 185, 249, 278, 316, 343
FatI CATG 2 cut(s) 276, 314
FblI GTMKAC 2 cut(s) 119, 248
FokI GGATG 1 cut(s) 320
GlaI GCGC 2 cut(s) 62, 127
HaeIII GGCC 5 cut(s) 31, 42, 71, 269, 285
HgaI GACGC 1 cut(s) 84
HhaI GCGC 2 cut(s) 63, 128
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 2 cut(s) 280, 318
Hin6I GCGC 2 cut(s) 61, 126
HinP1I GCGC 2 cut(s) 61, 126
HinfI GANTC 2 cut(s) 134, 297
Hpy166II GTNNAC 2 cut(s) 120, 249
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 277
Hpy8I GTNNAC 2 cut(s) 120, 249
HpyAV CCTTC 1 cut(s) 60
HpyCH4V TGCA 1 cut(s) 36
HpyF3I CTNAG 1 cut(s) 73
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 2 cut(s) 280, 318
HspAI GCGC 2 cut(s) 61, 126
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 3 cut(s) 76, 103, 136
MboII GAAGA 4 cut(s) 102, 250, 265, 306
MluCI AATT 3 cut(s) 10, 106, 223
MnlI CCTC 4 cut(s) 25, 28, 296, 337
MseI TTAA 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 91
NlaIII CATG 2 cut(s) 280, 318
NlaIV GGNNCC 1 cut(s) 240
PagI TCATGA 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PfeI GAWTC 2 cut(s) 134, 297
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 2 cut(s) 41, 267
SaqAI TTAA 1 cut(s) 200
Sau96I GGNCC 2 cut(s) 41, 267
ScrFI CCNGG 1 cut(s) 91
SetI ASST 3 cut(s) 119, 125, 240
Sse9I AATT 3 cut(s) 10, 106, 223
SspI AATATT 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 89
TaqI TCGA 2 cut(s) 137, 221
TasI AATT 3 cut(s) 10, 106, 223
TfiI GAWTC 2 cut(s) 134, 297
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TspDTI ATGAA 3 cut(s) 42, 265, 293
XapI RAATTY 2 cut(s) 10, 223
XmiI GTMKAC 2 cut(s) 119, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.