pycom12659g00120

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012659
Physical Location & Seq
Forward (+)
262407 .. 264022
1616 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12659g00120.1

Sequence Viewer

Length: 309 bp
ATGCTCGAACAAACCACCTCGAACTCCTTCAAGTGTTTGTTGGGGTCTTCCATAGACAAGCCATGGAACTTCGGAATATGGTGTAACAAACTGGATTTGAGTTCAAATTCCTCAGTCTTCCCCTCTGCAGCTGTGGGGTATTGGATACAAAGAGGCAATGCATTATCCAAACCCGAGGCCGAAAGCTCCTTGATGGTTCTATTATCTGCTCACCCCCTCGCTAAAGGGGGTTTAGTTCCTCATAACTTTGAAATCAAAGAAACACCTAAACATTCCAACAACTCAAACATGAATTGTATGAACGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.17

Weight (kDa)

7.75

Isoelectric Point (pI)

26.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 303
AcsI RAATTY 1 cut(s) 106
AgsI TTSAA 3 cut(s) 31, 105, 251
AluBI AGCT 2 cut(s) 131, 186
AluI AGCT 2 cut(s) 131, 186
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 1 cut(s) 106
Asp700I GAANNNNTTC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 173
BbsI GAAGAC 2 cut(s) 39, 109
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 187
BciVI GTATCC 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 126
BfuI GTATCC 1 cut(s) 138
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 173
BpiI GAAGAC 2 cut(s) 39, 109
BsaJI CCNNGG 2 cut(s) 62, 174
Bse1I ACTGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 62, 174
BseMI GCAATG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 140
BshFI GGCC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 173
BsnI GGCC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 173
Bsp19I CCATGG 1 cut(s) 62
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 125
BspMAI CTGCAG 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 163
BsrI ACTGG 1 cut(s) 96
BssECI CCNNGG 2 cut(s) 62, 174
BssT1I CCWWGG 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 2 cut(s) 39, 109
BsuI GTATCC 1 cut(s) 138
BsuRI GGCC 1 cut(s) 179
BtgI CCRYGG 1 cut(s) 62
CviAII CATG 2 cut(s) 63, 289
CviJI RGCY 4 cut(s) 61, 131, 179, 186
CviKI_1 RGCY 4 cut(s) 61, 131, 179, 186
DdeI CTNAG 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 62
EcoT22I ATGCAT 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 62
FaeI CATG 2 cut(s) 66, 292
FaiI YATR 6 cut(s) 53, 64, 79, 243, 290, 299
FatI CATG 2 cut(s) 62, 288
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 1 cut(s) 179
Hin1II CATG 2 cut(s) 66, 292
HphI GGTGA 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 2 cut(s) 128, 161
HpyF3I CTNAG 1 cut(s) 112
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 2 cut(s) 66, 292
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 1 cut(s) 77
Lsp1109I GCAGC 1 cut(s) 140
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 83
MboII GAAGA 2 cut(s) 39, 109
MluCI AATT 2 cut(s) 106, 292
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 7 cut(s) 28, 121, 133, 146, 169, 227, 249
Mph1103I ATGCAT 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 131
NcoI CCATGG 1 cut(s) 62
NlaIII CATG 2 cut(s) 66, 292
NsiI ATGCAT 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 130
Psp1406I AACGTT 1 cut(s) 303
PstI CTGCAG 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 131
SatI GCNGC 1 cut(s) 129
SetI ASST 5 cut(s) 20, 133, 188, 268, 306
SfcI CTRYAG 1 cut(s) 126
Sse9I AATT 2 cut(s) 106, 292
StyI CCWWGG 1 cut(s) 62
TaiI ACGT 1 cut(s) 306
TaqI TCGA 2 cut(s) 6, 20
TasI AATT 2 cut(s) 106, 292
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 305
XapI RAATTY 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 26
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.