pycom13g28310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0001044
Physical Location & Seq
Forward (+)
24198890 .. 24199651
762 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g28310.2

Sequence Viewer

Length: 720 bp
ATGGAATATGGCATGACATTAATAGAAGCACCTAAATCTAACATGCACTGTTCAAATCTAGTGTTTCCAATTATGCATGGGATAGTAAAGCTCCCTGGATTCTTACACTTTGGAGGTAACTTTCGTTGCAAAACCGCGGACACATTTTCACTTACTTTAACAACTTCTTTGTTTGAAATTCTTTTCCTAGTTGTGCATAACTCTTTTAAAAACTTTGCATACCTGGGCACTTGCTTAATGGCATCAAGTAAAGGAATGTTTACTTGGACTTTTCGAAAGGTATCCAAAATGTCCTTTTCGCTTTCTTCCTTCTTCGACTGTGCAAATTTGCAAGGGAAAGGAACATTGGGCAGATTAGTGTTCGAAATCACAACATTTGGGACAACATTACCTGAGATGGACAATTGGGAGGGCTTAGATGGCTGCGCTTCTTCAATTTGTATCTTCTCATTTTCCTTGTTTCCCACTTCTTTTCCACTTCTTACTGTGATAGCTTTTGCAGATTCGAAACCACCCTTGGGATTGACCACCGTAGTGCTTCGTAACTTACCATTTTCACGGAATTGTCCCAAAAATTCGGCCATTTGGCCCATTTGCTTCTTTTGCTCATTAACCTCCTTTGCTTGGTTATGCATTCCCTGCGCCATTGTGGTTAGTAACTCATATGTTTTATCGTCATTCATAGACGTACCTGAGTTGGTTTGGGATGATTGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

26.5

Weight (kDa)

6.85

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 137
AciI CCGC 2 cut(s) 135, 137
AcoI YGGCCR 1 cut(s) 579
AcsI RAATTY 3 cut(s) 177, 325, 574
AfaI GTAC 1 cut(s) 690
AfiI CCNNNNNNNGG 2 cut(s) 518, 624
AgsI TTSAA 3 cut(s) 54, 176, 435
AjnI CCWGG 2 cut(s) 94, 222
AjuI GAANNNNNNNTTGG 6 cut(s) 247, 279, 329, 361, 500, 532
AleI CACNNNNGTG 1 cut(s) 533
AluBI AGCT 2 cut(s) 91, 494
AluI AGCT 2 cut(s) 91, 494
AoxI GGCC 2 cut(s) 579, 587
ApeKI GCWGC 1 cut(s) 423
ApoI RAATTY 3 cut(s) 177, 325, 574
AseI ATTAAT 1 cut(s) 20
AspLEI GCGC 2 cut(s) 428, 644
AspS9I GGNCC 1 cut(s) 588
AsuII TTCGAA 3 cut(s) 274, 363, 506
BaeGI GKGCMC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 410
BccI CCATC 2 cut(s) 391, 413
BciT130I CCWGG 2 cut(s) 96, 224
BciVI GTATCC 1 cut(s) 292
BfaI CTAG 2 cut(s) 59, 188
BfuI GTATCC 1 cut(s) 292
BisI GCNGC 1 cut(s) 424
BlsI GCNGC 1 cut(s) 425
Bme1390I CCNGG 2 cut(s) 96, 224
BmgT120I GGNCC 1 cut(s) 588
BmrFI CCNGG 2 cut(s) 96, 224
BmsI GCATC 1 cut(s) 251
Bpu14I TTCGAA 3 cut(s) 274, 363, 506
BsaJI CCNNGG 4 cut(s) 94, 135, 223, 516
Bsc4I CCNNNNNNNGG 2 cut(s) 518, 624
BseBI CCWGG 2 cut(s) 96, 224
BseDI CCNNGG 4 cut(s) 94, 135, 223, 516
BseGI GGATG 1 cut(s) 712
BseLI CCNNNNNNNGG 2 cut(s) 518, 624
BseMII CTCAG 2 cut(s) 384, 684
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 1 cut(s) 410
Bsh1236I CGCG 1 cut(s) 137
BshFI GGCC 2 cut(s) 581, 589
BslFI GGGAC 2 cut(s) 394, 552
BslI CCNNNNNNNGG 2 cut(s) 518, 624
BsmFI GGGAC 2 cut(s) 394, 552
BsmI GAATGC 1 cut(s) 633
BsnI GGCC 2 cut(s) 581, 589
Bsp119I TTCGAA 3 cut(s) 274, 363, 506
Bsp1286I GDGCHC 1 cut(s) 230
BspACI CCGC 2 cut(s) 135, 137
BspANI GGCC 2 cut(s) 581, 589
BspCNI CTCAG 2 cut(s) 385, 685
BspFNI CGCG 1 cut(s) 137
BspT104I TTCGAA 3 cut(s) 274, 363, 506
BssECI CCNNGG 4 cut(s) 94, 135, 223, 516
BssT1I CCWWGG 1 cut(s) 516
Bst2UI CCWGG 2 cut(s) 96, 224
Bst4CI ACNGT 4 cut(s) 50, 320, 487, 532
BstAPI GCANNNNNTGC 1 cut(s) 639
BstBI TTCGAA 3 cut(s) 274, 363, 506
BstDEI CTNAG 3 cut(s) 393, 415, 693
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 712
BstFNI CGCG 1 cut(s) 137
BstHHI GCGC 2 cut(s) 428, 644
BstMWI GCNNNNNNNGC 3 cut(s) 420, 603, 639
BstNI CCWGG 2 cut(s) 96, 224
BstNSI RCATGY 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 94, 222
BstSLI GKGCMC 1 cut(s) 230
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 410
BsuI GTATCC 1 cut(s) 292
BsuRI GGCC 2 cut(s) 581, 589
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 1 cut(s) 712
BtsIMutI CAGTG 1 cut(s) 46
CfoI GCGC 2 cut(s) 428, 644
Cfr13I GGNCC 1 cut(s) 588
Cfr42I CCGCGG 1 cut(s) 138
Csp6I GTAC 1 cut(s) 689
CviAII CATG 3 cut(s) 13, 43, 77
CviJI RGCY 6 cut(s) 91, 414, 423, 494, 581, 589
CviKI_1 RGCY 6 cut(s) 91, 414, 423, 494, 581, 589
CviQI GTAC 1 cut(s) 689
DdeI CTNAG 3 cut(s) 393, 415, 693
DraI TTTAAA 1 cut(s) 208
EaeI YGGCCR 1 cut(s) 579
Eco130I CCWWGG 1 cut(s) 516
EcoRII CCWGG 2 cut(s) 94, 222
EcoT14I CCWWGG 1 cut(s) 516
EcoT22I ATGCAT 2 cut(s) 78, 635
ErhI CCWWGG 1 cut(s) 516
FaeI CATG 3 cut(s) 16, 46, 80
FaqI GGGAC 2 cut(s) 394, 552
FatI CATG 3 cut(s) 12, 42, 76
FauNDI CATATG 1 cut(s) 664
Fnu4HI GCNGC 1 cut(s) 424
Fsp4HI GCNGC 1 cut(s) 424
FspBI CTAG 2 cut(s) 59, 188
GlaI GCGC 2 cut(s) 427, 643
GluI GCNGC 1 cut(s) 424
HaeIII GGCC 2 cut(s) 581, 589
HhaI GCGC 2 cut(s) 428, 644
Hin1II CATG 3 cut(s) 16, 46, 80
Hin6I GCGC 2 cut(s) 426, 642
HinP1I GCGC 2 cut(s) 426, 642
HinfI GANTC 2 cut(s) 99, 503
Hpy166II GTNNAC 1 cut(s) 261
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 4 cut(s) 50, 320, 487, 532
HpyCH4IV ACGT 1 cut(s) 687
HpyCH4V TGCA 9 cut(s) 46, 76, 129, 196, 218, 323, 331, 500, 633
HpyF10VI GCNNNNNNNGC 3 cut(s) 420, 603, 639
HpyF3I CTNAG 3 cut(s) 393, 415, 693
HpySE526I ACGT 1 cut(s) 687
Hsp92II CATG 3 cut(s) 16, 46, 80
HspAI GCGC 2 cut(s) 426, 642
KspI CCGCGG 1 cut(s) 138
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 7 cut(s) 81, 108, 209, 236, 405, 652, 705
Lsp1109I GCAGC 1 cut(s) 410
LweI GCATC 1 cut(s) 251
MaeI CTAG 2 cut(s) 59, 188
MaeII ACGT 1 cut(s) 687
MaeIII GTNAC 3 cut(s) 116, 542, 656
MboII GAAGA 4 cut(s) 297, 304, 423, 436
MfeI CAATTG 1 cut(s) 403
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 7 cut(s) 69, 177, 325, 403, 435, 562, 574
MnlI CCTC 3 cut(s) 107, 403, 625
Mph1103I ATGCAT 2 cut(s) 78, 635
MseI TTAA 5 cut(s) 20, 158, 207, 236, 611
MslI CAYNNNNRTG 1 cut(s) 533
MspA1I CMGCKG 1 cut(s) 137
MspR9I CCNGG 2 cut(s) 96, 224
MunI CAATTG 1 cut(s) 403
Mva1269I GAATGC 1 cut(s) 633
MvaI CCWGG 2 cut(s) 96, 224
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 3 cut(s) 420, 603, 639
NdeI CATATG 1 cut(s) 664
NlaIII CATG 3 cut(s) 16, 46, 80
NsiI ATGCAT 2 cut(s) 78, 635
NspI RCATGY 1 cut(s) 46
NspV TTCGAA 3 cut(s) 274, 363, 506
OliI CACNNNNGTG 1 cut(s) 533
PctI GAATGC 1 cut(s) 633
PfeI GAWTC 2 cut(s) 99, 503
PkrI GCNGC 1 cut(s) 425
PshBI ATTAAT 1 cut(s) 20
Psp6I CCWGG 2 cut(s) 94, 222
PspGI CCWGG 2 cut(s) 94, 222
PspPI GGNCC 1 cut(s) 588
RsaI GTAC 1 cut(s) 690
RsaNI GTAC 1 cut(s) 689
RseI CAYNNNNRTG 1 cut(s) 533
SacII CCGCGG 1 cut(s) 138
SaqAI TTAA 5 cut(s) 20, 158, 207, 236, 611
SatI GCNGC 1 cut(s) 424
Sau96I GGNCC 1 cut(s) 588
ScrFI CCNGG 2 cut(s) 96, 224
SduI GDGCHC 1 cut(s) 230
SfaNI GCATC 1 cut(s) 251
Sfr303I CCGCGG 1 cut(s) 138
SfuI TTCGAA 3 cut(s) 274, 363, 506
SgrBI CCGCGG 1 cut(s) 138
SmiMI CAYNNNNRTG 1 cut(s) 533
Sse9I AATT 7 cut(s) 69, 177, 325, 403, 435, 562, 574
SsiI CCGC 2 cut(s) 135, 137
SspMI CTAG 2 cut(s) 59, 188
StyD4I CCNGG 2 cut(s) 94, 222
StyI CCWWGG 1 cut(s) 516
TaaI ACNGT 4 cut(s) 50, 320, 487, 532
TaiI ACGT 1 cut(s) 690
TaqI TCGA 4 cut(s) 274, 315, 363, 506
TasI AATT 7 cut(s) 69, 177, 325, 403, 435, 562, 574
TfiI GAWTC 2 cut(s) 99, 503
Tru1I TTAA 5 cut(s) 20, 158, 207, 236, 611
Tru9I TTAA 5 cut(s) 20, 158, 207, 236, 611
TscAI CASTG 1 cut(s) 53
TseI GCWGC 1 cut(s) 423
TspDTI ATGAA 1 cut(s) 670
TspGWI ACGGA 1 cut(s) 574
TspRI CASTG 1 cut(s) 53
VspI ATTAAT 1 cut(s) 20
XapI RAATTY 3 cut(s) 177, 325, 574
XceI RCATGY 1 cut(s) 46
XspI CTAG 2 cut(s) 59, 188
Zsp2I ATGCAT 2 cut(s) 78, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.