Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012426

Orthogroup ID

OG0001044

Physical Location & Seq

Genomic Coordinates Forward (+)

189482 .. 189685

Gene Structure 204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12426g00340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGCTCTCCCATGATGTGACAGTTCCGGGAGCCAATTCGTACAACCAATCTTTCGCTTTCTCTTGGAGAGAAAAGGGAAAGGCCTTCATCTTCAAGATGCTCTCATCCACGTTCACCGGAGTCATGCTTGAGCAAACGACTTCAAACTCCTTCAAATGCTTGTTCGGATCTTCCATGGATAGCCCATGGTACTTCGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

68

Amino Acids

7.57

Weight (kDa)

7.91

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001044)

Species	Orthologous Gene IDs
malus_domestica	MD00G1199800.v1.1 MD12G1009800.v1.1
pyrus_communis	pycom01g00360 pycom01g00370 pycom01g01360 pycom01g01490 pycom01g01720 pycom01g01940 pycom01g03060 pycom01g03070 pycom01g03730 pycom01g04350 pycom04g07860 pycom1128g00090 pycom11g16010 pycom12409g00010 pycom12420g00090 pycom12424g00140 pycom12426g00050 pycom12426g00220 pycom12426g00260 pycom12426g00340 pycom12426g00380 pycom12426g00390 pycom12426g00590 pycom12480g00050 pycom12529g00020 pycom12561g00060 pycom1256g00150 pycom1256g00260 pycom12659g00120 pycom12661g00140 pycom12g09700 pycom1341g00110 pycom13g24360 pycom13g25370 pycom13g25380 pycom13g25420 pycom13g25460 pycom13g25840 pycom13g26320 pycom13g28310 pycom13g28320 pycom1654g00080 pycom1654g00130 pycom1654g00140 pycom17g16570 pycom17g16660 pycom17g18490 pycom2238g00030 pycom2246g00120 pycom436g00480 pycom436g00510 pycom576g00010 pycom57g00060 pycom808g00560 pycom808g00650 pycom992g00010
rosa_chinensis	RchiOBHm_Chr0c04g0497971 RchiOBHm_Chr2g0129591 RchiOBHm_Chr7g0215791

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	175
AfaI	GTAC	2 cut(s)	41, 191
AgsI	TTSAA	3 cut(s)	94, 144, 154
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	81
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	174, 185
BsaWI	WCCGGW	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	174, 185
BseGI	GGATG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	26, 117
BsnI	GGCC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	167
Bsp19I	CCATGG	2 cut(s)	174, 185
BspANI	GGCC	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	174, 185
BssMI	GATC	1 cut(s)	167
BssT1I	CCWWGG	2 cut(s)	174, 185
Bst4CI	ACNGT	1 cut(s)	22
BstDSI	CCRYGG	2 cut(s)	174, 185
BstF5I	GGATG	1 cut(s)	104
BstKTI	GATC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	83
BtgI	CCRYGG	2 cut(s)	174, 185
BtsCI	GGATG	1 cut(s)	104
Csp6I	GTAC	2 cut(s)	40, 190
CviAII	CATG	4 cut(s)	11, 124, 175, 186
CviJI	RGCY	3 cut(s)	32, 83, 183
CviKI_1	RGCY	3 cut(s)	32, 83, 183
CviQI	GTAC	2 cut(s)	40, 190
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
Eco130I	CCWWGG	2 cut(s)	174, 185
Eco147I	AGGCCT	1 cut(s)	83
EcoT14I	CCWWGG	2 cut(s)	174, 185
ErhI	CCWWGG	2 cut(s)	174, 185
FaeI	CATG	4 cut(s)	14, 127, 178, 189
FaiI	YATR	4 cut(s)	12, 125, 176, 187
FatI	CATG	4 cut(s)	10, 123, 174, 185
FokI	GGATG	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	2 cut(s)	26, 117
Hin1II	CATG	4 cut(s)	14, 127, 178, 189
HinfI	GANTC	1 cut(s)	120
HpaII	CCGG	2 cut(s)	26, 117
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	2 cut(s)	167, 197
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	2 cut(s)	94, 160
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	4 cut(s)	14, 127, 178, 189
Kzo9I	GATC	1 cut(s)	167
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	2 cut(s)	39, 130
LweI	GCATC	1 cut(s)	87
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	2 cut(s)	82, 162
MflI	RGATCY	1 cut(s)	167
MluCI	AATT	1 cut(s)	34
MlyI	GAGTC	1 cut(s)	129
MspI	CCGG	2 cut(s)	26, 117
MspR9I	CCNGG	1 cut(s)	27
NciI	CCSGG	1 cut(s)	27
NcoI	CCATGG	2 cut(s)	174, 185
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	4 cut(s)	14, 127, 178, 189
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	83
PfoI	TCCNGGA	1 cut(s)	25
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	167
RsaI	GTAC	2 cut(s)	41, 191
RsaNI	GTAC	2 cut(s)	40, 190
Sau3AI	GATC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	1 cut(s)	113
SfaNI	GCATC	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	34
SseBI	AGGCCT	1 cut(s)	83
StuI	AGGCCT	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	2 cut(s)	174, 185
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	113
TasI	AATT	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.