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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 26, 324 |
| AccB1I | GGYRCC | 1 cut(s) | 704 |
| AccBSI | CCGCTC | 1 cut(s) | 240 |
| AciI | CCGC | 8 cut(s) | 240, 369, 512, 591, 683, 1025, 1133, 1402 |
| AclWI | GGATC | 3 cut(s) | 94, 864, 877 |
| AcoI | YGGCCR | 1 cut(s) | 850 |
| AcsI | RAATTY | 3 cut(s) | 216, 556, 1600 |
| AcuI | CTGAAG | 2 cut(s) | 1049, 1423 |
| AfaI | GTAC | 4 cut(s) | 148, 209, 666, 1578 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 394, 444, 530, 674 |
| AflII | CTTAAG | 1 cut(s) | 1720 |
| AflIII | ACRYGT | 1 cut(s) | 143 |
| AjnI | CCWGG | 2 cut(s) | 82, 272 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 547, 579 |
| AluBI | AGCT | 5 cut(s) | 108, 1091, 1241, 1291, 1378 |
| AluI | AGCT | 5 cut(s) | 108, 1091, 1241, 1291, 1378 |
| Alw21I | GWGCWC | 2 cut(s) | 838, 1093 |
| Alw26I | GTCTC | 4 cut(s) | 122, 274, 573, 880 |
| AlwI | GGATC | 3 cut(s) | 94, 864, 877 |
| Ama87I | CYCGRG | 1 cut(s) | 1365 |
| AoxI | GGCC | 2 cut(s) | 850, 1447 |
| ApeKI | GCWGC | 3 cut(s) | 105, 423, 991 |
| ApoI | RAATTY | 3 cut(s) | 216, 556, 1600 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1506, 1538 |
| AseI | ATTAAT | 3 cut(s) | 8, 1950, 1995 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1178 |
| AspS9I | GGNCC | 2 cut(s) | 621, 855 |
| AsuC2I | CCSGG | 1 cut(s) | 771 |
| AsuHPI | GGTGA | 1 cut(s) | 511 |
| AvaI | CYCGRG | 1 cut(s) | 1365 |
| AvaII | GGWCC | 2 cut(s) | 621, 855 |
| BaeGI | GKGCMC | 1 cut(s) | 332 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1560, 1593 |
| BamHI | GGATCC | 1 cut(s) | 869 |
| BanI | GGYRCC | 1 cut(s) | 704 |
| BanII | GRGCYC | 1 cut(s) | 1093 |
| BauI | CACGAG | 1 cut(s) | 996 |
| Bbv12I | GWGCWC | 2 cut(s) | 838, 1093 |
| BbvI | GCAGC | 3 cut(s) | 117, 435, 1003 |
| BccI | CCATC | 3 cut(s) | 356, 881, 1270 |
| BceAI | ACGGC | 1 cut(s) | 1672 |
| BciT130I | CCWGG | 2 cut(s) | 84, 274 |
| BclI | TGATCA | 1 cut(s) | 810 |
| BcnI | CCSGG | 1 cut(s) | 771 |
| BcoDI | GTCTC | 4 cut(s) | 122, 274, 573, 880 |
| BfaI | CTAG | 5 cut(s) | 27, 320, 551, 1581, 1845 |
| BfrI | CTTAAG | 1 cut(s) | 1720 |
| BfuAI | ACCTGC | 2 cut(s) | 26, 324 |
| BisI | GCNGC | 4 cut(s) | 106, 370, 424, 992 |
| BlsI | GCNGC | 4 cut(s) | 107, 371, 425, 993 |
| Bme1390I | CCNGG | 3 cut(s) | 84, 274, 771 |
| Bme18I | GGWCC | 2 cut(s) | 621, 855 |
| BmeT110I | CYCGRG | 1 cut(s) | 1365 |
| BmgT120I | GGNCC | 2 cut(s) | 621, 855 |
| BmiI | GGNNCC | 4 cut(s) | 474, 706, 734, 871 |
| BmrFI | CCNGG | 3 cut(s) | 84, 274, 771 |
| BmrI | ACTGGG | 1 cut(s) | 1843 |
| BmsI | GCATC | 4 cut(s) | 4, 239, 810, 1110 |
| BmuI | ACTGGG | 1 cut(s) | 1843 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 119, 151, 721, 753, 1144, 1176 |
| BpmI | CTGGAG | 1 cut(s) | 256 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1210, 1360 |
| BpuEI | CTTGAG | 3 cut(s) | 479, 1133, 1307 |
| BpuMI | CCSGG | 1 cut(s) | 771 |
| Bsa29I | ATCGAT | 1 cut(s) | 759 |
| BsaBI | GATNNNNATC | 1 cut(s) | 792 |
| BsaI | GGTCTC | 1 cut(s) | 573 |
| BsaJI | CCNNGG | 5 cut(s) | 563, 1332, 1366, 1405, 1531 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 394, 444, 530, 674 |
| Bse1I | ACTGG | 2 cut(s) | 623, 1838 |
| Bse8I | GATNNNNATC | 1 cut(s) | 792 |
| BseBI | CCWGG | 2 cut(s) | 84, 274 |
| BseCI | ATCGAT | 1 cut(s) | 759 |
| BseDI | CCNNGG | 5 cut(s) | 563, 1332, 1366, 1405, 1531 |
| BseGI | GGATG | 8 cut(s) | 282, 287, 434, 759, 1125, 1200, 1557, 1993 |
| BseJI | GATNNNNATC | 1 cut(s) | 792 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 394, 444, 530, 674 |
| BseMII | CTCAG | 2 cut(s) | 875, 1465 |
| BseNI | ACTGG | 2 cut(s) | 623, 1838 |
| BseRI | GAGGAG | 1 cut(s) | 283 |
| BseSI | GKGCMC | 1 cut(s) | 332 |
| BseXI | GCAGC | 3 cut(s) | 117, 435, 1003 |
| BshFI | GGCC | 2 cut(s) | 852, 1449 |
| BshNI | GGYRCC | 1 cut(s) | 704 |
| BshVI | ATCGAT | 1 cut(s) | 759 |
| BsiHKAI | GWGCWC | 2 cut(s) | 838, 1093 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1365 |
| BsiSI | CCGG | 2 cut(s) | 771, 853 |
| BslFI | GGGAC | 1 cut(s) | 1049 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 394, 444, 530, 674 |
| BsmAI | GTCTC | 4 cut(s) | 122, 274, 573, 880 |
| BsmBI | CGTCTC | 1 cut(s) | 274 |
| BsmFI | GGGAC | 1 cut(s) | 1049 |
| BsmI | GAATGC | 2 cut(s) | 958, 1195 |
| BsnI | GGCC | 2 cut(s) | 852, 1449 |
| Bso31I | GGTCTC | 1 cut(s) | 573 |
| BsoBI | CYCGRG | 1 cut(s) | 1365 |
| Bsp1286I | GDGCHC | 3 cut(s) | 332, 838, 1093 |
| Bsp143I | GATC | 7 cut(s) | 86, 756, 760, 810, 869, 1325, 1822 |
| Bsp19I | CCATGG | 2 cut(s) | 1332, 1405 |
| BspACI | CCGC | 8 cut(s) | 240, 369, 512, 591, 683, 1025, 1133, 1402 |
| BspANI | GGCC | 2 cut(s) | 852, 1449 |
| BspCNI | CTCAG | 2 cut(s) | 876, 1464 |
| BspDI | ATCGAT | 1 cut(s) | 759 |
| BspLI | GGNNCC | 4 cut(s) | 474, 706, 734, 871 |
| BspMI | ACCTGC | 2 cut(s) | 26, 324 |
| BspPI | GGATC | 3 cut(s) | 94, 864, 877 |
| BspQI | GCTCTTC | 1 cut(s) | 1098 |
| BspT107I | GGYRCC | 1 cut(s) | 704 |
| BspTI | CTTAAG | 1 cut(s) | 1720 |
| BspTNI | GGTCTC | 1 cut(s) | 573 |
| BsrBI | CCGCTC | 1 cut(s) | 240 |
| BsrI | ACTGG | 2 cut(s) | 623, 1838 |
| BssECI | CCNNGG | 5 cut(s) | 563, 1332, 1366, 1405, 1531 |
| BssMI | GATC | 7 cut(s) | 86, 756, 760, 810, 869, 1325, 1822 |
| BssSI | CACGAG | 1 cut(s) | 996 |
| BssT1I | CCWWGG | 4 cut(s) | 563, 1332, 1405, 1531 |
| Bst2BI | CACGAG | 1 cut(s) | 996 |
| Bst2UI | CCWGG | 2 cut(s) | 84, 274 |
| Bst6I | CTCTTC | 5 cut(s) | 418, 445, 1098, 1202, 1424 |
| BstAFI | CTTAAG | 1 cut(s) | 1720 |
| BstC8I | GCNNGC | 1 cut(s) | 307 |
| BstDEI | CTNAG | 6 cut(s) | 202, 884, 1210, 1360, 1451, 1615 |
| BstDSI | CCRYGG | 2 cut(s) | 1332, 1405 |
| BstF5I | GGATG | 8 cut(s) | 282, 287, 434, 759, 1125, 1200, 1557, 1993 |
| BstKTI | GATC | 7 cut(s) | 89, 759, 763, 813, 872, 1328, 1825 |
| BstMAI | GTCTC | 4 cut(s) | 122, 274, 573, 880 |
| BstMBI | GATC | 7 cut(s) | 86, 756, 760, 810, 869, 1325, 1822 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 114, 964, 973, 1024 |
| BstNI | CCWGG | 2 cut(s) | 84, 274 |
| BstNSI | RCATGY | 2 cut(s) | 147, 255 |
| BstSCI | CCNGG | 3 cut(s) | 82, 272, 769 |
| BstSLI | GKGCMC | 1 cut(s) | 332 |
| BstV1I | GCAGC | 3 cut(s) | 117, 435, 1003 |
| BstX2I | RGATCY | 2 cut(s) | 86, 869 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1406 |
| BstYI | RGATCY | 2 cut(s) | 86, 869 |
| Bsu15I | ATCGAT | 1 cut(s) | 759 |
| BsuRI | GGCC | 2 cut(s) | 852, 1449 |
| BsuTUI | ATCGAT | 1 cut(s) | 759 |
| BtgI | CCRYGG | 2 cut(s) | 1332, 1405 |
| BtsCI | GGATG | 8 cut(s) | 282, 287, 434, 759, 1125, 1200, 1557, 1993 |
| BveI | ACCTGC | 2 cut(s) | 26, 324 |
| Cac8I | GCNNGC | 1 cut(s) | 307 |
| Cfr13I | GGNCC | 2 cut(s) | 621, 855 |
| ClaI | ATCGAT | 1 cut(s) | 759 |
| Csp6I | GTAC | 4 cut(s) | 147, 208, 665, 1577 |
| CviAII | CATG | 8 cut(s) | 144, 252, 1282, 1333, 1406, 1623, 1685, 1705 |
| CviQI | GTAC | 4 cut(s) | 147, 208, 665, 1577 |
| DdeI | CTNAG | 6 cut(s) | 202, 884, 1210, 1360, 1451, 1615 |
| DpnI | GATC | 7 cut(s) | 88, 758, 762, 812, 871, 1327, 1824 |
| DpnII | GATC | 7 cut(s) | 86, 756, 760, 810, 869, 1325, 1822 |
| EaeI | YGGCCR | 1 cut(s) | 850 |
| Eam1104I | CTCTTC | 5 cut(s) | 418, 445, 1098, 1202, 1424 |
| EarI | CTCTTC | 5 cut(s) | 418, 445, 1098, 1202, 1424 |
| EciI | GGCGGA | 1 cut(s) | 698 |
| Ecl136II | GAGCTC | 1 cut(s) | 1091 |
| Eco130I | CCWWGG | 4 cut(s) | 563, 1332, 1405, 1531 |
| Eco24I | GRGCYC | 1 cut(s) | 1093 |
| Eco31I | GGTCTC | 1 cut(s) | 573 |
| Eco47I | GGWCC | 2 cut(s) | 621, 855 |
| Eco53kI | GAGCTC | 1 cut(s) | 1091 |
| Eco57I | CTGAAG | 2 cut(s) | 1049, 1423 |
| Eco88I | CYCGRG | 1 cut(s) | 1365 |
| EcoICRI | GAGCTC | 1 cut(s) | 1091 |
| EcoRII | CCWGG | 2 cut(s) | 82, 272 |
| EcoT14I | CCWWGG | 4 cut(s) | 563, 1332, 1405, 1531 |
| EcoT38I | GRGCYC | 1 cut(s) | 1093 |
| ErhI | CCWWGG | 4 cut(s) | 563, 1332, 1405, 1531 |
| Esp3I | CGTCTC | 1 cut(s) | 274 |
| FaeI | CATG | 8 cut(s) | 147, 255, 1285, 1336, 1409, 1626, 1688, 1708 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 512, 544, 1714, 1746 |
| FaqI | GGGAC | 1 cut(s) | 1049 |
| FatI | CATG | 8 cut(s) | 143, 251, 1281, 1332, 1405, 1622, 1684, 1704 |
| FauI | CCCGC | 2 cut(s) | 233, 1032 |
| FbaI | TGATCA | 1 cut(s) | 810 |
| Fnu4HI | GCNGC | 4 cut(s) | 106, 370, 424, 992 |
| FokI | GGATG | 7 cut(s) | 274, 289, 421, 766, 1132, 1187, 1564 |
| FriOI | GRGCYC | 1 cut(s) | 1093 |
| Fsp4HI | GCNGC | 4 cut(s) | 106, 370, 424, 992 |
| FspBI | CTAG | 5 cut(s) | 27, 320, 551, 1581, 1845 |
| GluI | GCNGC | 4 cut(s) | 106, 370, 424, 992 |
| GsuI | CTGGAG | 1 cut(s) | 256 |
| HaeIII | GGCC | 2 cut(s) | 852, 1449 |
| HapII | CCGG | 2 cut(s) | 771, 853 |
| Hin1II | CATG | 8 cut(s) | 147, 255, 1285, 1336, 1409, 1626, 1688, 1708 |
| HincII | GTYRAC | 1 cut(s) | 1010 |
| HindII | GTYRAC | 1 cut(s) | 1010 |
| HindIII | AAGCTT | 1 cut(s) | 1239 |
| HinfI | GANTC | 9 cut(s) | 342, 1062, 1159, 1443, 1564, 1873, 1902, 1913, 1931 |
| HpaII | CCGG | 2 cut(s) | 771, 853 |
| HphI | GGTGA | 1 cut(s) | 511 |
| Hpy166II | GTNNAC | 3 cut(s) | 265, 624, 1010 |
| Hpy188I | TCNGA | 4 cut(s) | 533, 573, 1442, 1454 |
| Hpy188III | TCNNGA | 6 cut(s) | 162, 751, 1150, 1163, 1543, 1714 |
| Hpy8I | GTNNAC | 3 cut(s) | 265, 624, 1010 |
| Hpy99I | CGWCG | 2 cut(s) | 1270, 1523 |
| HpyAV | CCTTC | 6 cut(s) | 268, 538, 953, 1107, 1318, 1391 |
| HpyCH4IV | ACGT | 5 cut(s) | 267, 332, 663, 864, 1268 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 114, 964, 973, 1024 |
| HpyF3I | CTNAG | 6 cut(s) | 202, 884, 1210, 1360, 1451, 1615 |
| HpySE526I | ACGT | 5 cut(s) | 267, 332, 663, 864, 1268 |
| Hsp92II | CATG | 8 cut(s) | 147, 255, 1285, 1336, 1409, 1626, 1688, 1708 |
| Ksp22I | TGATCA | 1 cut(s) | 810 |
| Kzo9I | GATC | 7 cut(s) | 86, 756, 760, 810, 869, 1325, 1822 |
| LguI | GCTCTTC | 1 cut(s) | 1098 |
| LmnI | GCTCC | 3 cut(s) | 237, 738, 1383 |
| Lsp1109I | GCAGC | 3 cut(s) | 117, 435, 1003 |
| LweI | GCATC | 4 cut(s) | 4, 239, 810, 1110 |
| MaeI | CTAG | 5 cut(s) | 27, 320, 551, 1581, 1845 |
| MaeII | ACGT | 5 cut(s) | 267, 332, 663, 864, 1268 |
| MaeIII | GTNAC | 3 cut(s) | 903, 1652, 1793 |
| MalI | GATC | 7 cut(s) | 88, 758, 762, 812, 871, 1327, 1824 |
| MbiI | CCGCTC | 1 cut(s) | 240 |
| MboI | GATC | 7 cut(s) | 86, 756, 760, 810, 869, 1325, 1822 |
| MfeI | CAATTG | 5 cut(s) | 357, 540, 797, 1052, 1798 |
| MflI | RGATCY | 2 cut(s) | 86, 869 |
| MhlI | GDGCHC | 3 cut(s) | 332, 838, 1093 |
| MlyI | GAGTC | 6 cut(s) | 1071, 1153, 1573, 1867, 1896, 1907 |
| MmeI | TCCRAC | 6 cut(s) | 500, 639, 790, 847, 961, 1904 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1178 |
| MslI | CAYNNNNRTG | 4 cut(s) | 99, 142, 818, 1404 |
| MspA1I | CMGCKG | 1 cut(s) | 1027 |
| MspCI | CTTAAG | 1 cut(s) | 1720 |
| MspI | CCGG | 2 cut(s) | 771, 853 |
| MspR9I | CCNGG | 3 cut(s) | 84, 274, 771 |
| MunI | CAATTG | 5 cut(s) | 357, 540, 797, 1052, 1798 |
| Mva1269I | GAATGC | 2 cut(s) | 958, 1195 |
| MvaI | CCWGG | 2 cut(s) | 84, 274 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 114, 964, 973, 1024 |
| NciI | CCSGG | 1 cut(s) | 771 |
| NcoI | CCATGG | 2 cut(s) | 1332, 1405 |
| NdeII | GATC | 7 cut(s) | 86, 756, 760, 810, 869, 1325, 1822 |
| NlaIII | CATG | 8 cut(s) | 147, 255, 1285, 1336, 1409, 1626, 1688, 1708 |
| NlaIV | GGNNCC | 4 cut(s) | 474, 706, 734, 871 |
| NmuCI | GTSAC | 2 cut(s) | 903, 1793 |
| NspI | RCATGY | 2 cut(s) | 147, 255 |
| PacI | TTAATTAA | 1 cut(s) | 1999 |
| PciI | ACATGT | 1 cut(s) | 143 |
| PciSI | GCTCTTC | 1 cut(s) | 1098 |
| PctI | GAATGC | 2 cut(s) | 958, 1195 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1178 |
| PfeI | GAWTC | 3 cut(s) | 342, 1443, 1931 |
| PfoI | TCCNGGA | 1 cut(s) | 272 |
| PkrI | GCNGC | 4 cut(s) | 107, 371, 425, 993 |
| PleI | GAGTC | 6 cut(s) | 1070, 1153, 1572, 1867, 1896, 1907 |
| PpsI | GAGTC | 6 cut(s) | 1070, 1153, 1572, 1867, 1896, 1907 |
| PscI | ACATGT | 1 cut(s) | 143 |
| PshBI | ATTAAT | 3 cut(s) | 8, 1950, 1995 |
| Psp124BI | GAGCTC | 1 cut(s) | 1093 |
| Psp6I | CCWGG | 2 cut(s) | 82, 272 |
| PspGI | CCWGG | 2 cut(s) | 82, 272 |
| PspN4I | GGNNCC | 4 cut(s) | 474, 706, 734, 871 |
| PspPI | GGNCC | 2 cut(s) | 621, 855 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1810, 1842 |
| PsuI | RGATCY | 2 cut(s) | 86, 869 |
| RsaI | GTAC | 4 cut(s) | 148, 209, 666, 1578 |
| RsaNI | GTAC | 4 cut(s) | 147, 208, 665, 1577 |
| RseI | CAYNNNNRTG | 4 cut(s) | 99, 142, 818, 1404 |
| SacI | GAGCTC | 1 cut(s) | 1093 |
| SapI | GCTCTTC | 1 cut(s) | 1098 |
| SatI | GCNGC | 4 cut(s) | 106, 370, 424, 992 |
| Sau3AI | GATC | 7 cut(s) | 86, 756, 760, 810, 869, 1325, 1822 |
| Sau96I | GGNCC | 2 cut(s) | 621, 855 |
| SchI | GAGTC | 6 cut(s) | 1071, 1153, 1573, 1867, 1896, 1907 |
| ScrFI | CCNGG | 3 cut(s) | 84, 274, 771 |
| SduI | GDGCHC | 3 cut(s) | 332, 838, 1093 |
| SfaNI | GCATC | 4 cut(s) | 4, 239, 810, 1110 |
| SinI | GGWCC | 2 cut(s) | 621, 855 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 99, 142, 818, 1404 |
| SmlI | CTYRAG | 4 cut(s) | 494, 1148, 1286, 1720 |
| SmoI | CTYRAG | 4 cut(s) | 494, 1148, 1286, 1720 |
| SsiI | CCGC | 8 cut(s) | 240, 369, 512, 591, 683, 1025, 1133, 1402 |
| SspI | AATATT | 3 cut(s) | 121, 1078, 1257 |
| SspMI | CTAG | 5 cut(s) | 27, 320, 551, 1581, 1845 |
| SstI | GAGCTC | 1 cut(s) | 1093 |
| StyD4I | CCNGG | 3 cut(s) | 82, 272, 769 |
| StyI | CCWWGG | 4 cut(s) | 563, 1332, 1405, 1531 |
| TaiI | ACGT | 5 cut(s) | 270, 335, 666, 867, 1271 |
| TaqI | TCGA | 7 cut(s) | 163, 759, 876, 1265, 1324, 1341, 1391 |
| TaqII | GACCGA | 1 cut(s) | 1340 |
| TauI | GCSGC | 1 cut(s) | 372 |
| TfiI | GAWTC | 3 cut(s) | 342, 1443, 1931 |
| TseFI | GTSAC | 2 cut(s) | 903, 1793 |
| TseI | GCWGC | 3 cut(s) | 105, 423, 991 |
| Tsp45I | GTSAC | 2 cut(s) | 903, 1793 |
| TspDTI | ATGAA | 9 cut(s) | 276, 423, 935, 1089, 1189, 1234, 1373, 1604, 1701 |
| Vha464I | CTTAAG | 1 cut(s) | 1720 |
| VpaK11BI | GGWCC | 2 cut(s) | 621, 855 |
| VspI | ATTAAT | 3 cut(s) | 8, 1950, 1995 |
| XapI | RAATTY | 3 cut(s) | 216, 556, 1600 |
| XceI | RCATGY | 2 cut(s) | 147, 255 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 391, 747 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1178 |
| XspI | CTAG | 5 cut(s) | 27, 320, 551, 1581, 1845 |