pycom11g16010

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
17212136 .. 17214790
2655 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g16010.1

Sequence Viewer

Length: 219 bp
ATGCATCAGTATGGCATGACATTAATTGATGCACCTAAATCTAGCATAGCATGTTCAAACCTTGTATTACCAATCACACAAGGGATAGTGAAACTACCTGGATCTTTGCATTTAGGTGGCAGCTTTCTTTGCAACATTGCAGAGACATTCTCACTTACATGTGCCACCTCTTTCTCCCGAATCCGTTCCTTGTTGTACAAATCTTCTTCAAAAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.71

Weight (kDa)

9.3

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 109
AfaI GTAC 1 cut(s) 197
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 2 cut(s) 57, 210
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 1 cut(s) 123
AluI AGCT 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 120
AseI ATTAAT 1 cut(s) 23
Asp700I GAANNNNTTC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 2 cut(s) 13, 19
BplI GAGNNNNNCTC 2 cut(s) 134, 166
Bse3DI GCAATG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 99
BseMI GCAATG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 137
Bsp1407I TGTACA 1 cut(s) 195
Bsp143I GATC 1 cut(s) 101
BspPI GGATC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 135
BsrGI TGTACA 1 cut(s) 195
BssMI GATC 1 cut(s) 101
Bst2UI CCWGG 1 cut(s) 99
BstAUI TGTACA 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 216
BstKTI GATC 1 cut(s) 104
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 1 cut(s) 101
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 2 cut(s) 54, 162
BstSCI CCNGG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
Csp6I GTAC 1 cut(s) 196
CviAII CATG 3 cut(s) 16, 51, 159
CviJI RGCY 1 cut(s) 123
CviKI_1 RGCY 1 cut(s) 123
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 1 cut(s) 216
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 19, 54, 162
FaiI YATR 5 cut(s) 12, 17, 47, 52, 160
FatI CATG 3 cut(s) 15, 50, 158
Fnu4HI GCNGC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 121
FspBI CTAG 1 cut(s) 42
GluI GCNGC 1 cut(s) 121
Hin1II CATG 3 cut(s) 19, 54, 162
HinfI GANTC 1 cut(s) 180
Hpy188III TCNNGA 1 cut(s) 177
HpyCH4V TGCA 5 cut(s) 4, 32, 109, 132, 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 3 cut(s) 19, 54, 162
Kzo9I GATC 1 cut(s) 101
LpnPI CCDG 2 cut(s) 84, 111
Lsp1109I GCAGC 1 cut(s) 132
LweI GCATC 2 cut(s) 13, 19
MaeI CTAG 1 cut(s) 42
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MboII GAAGA 2 cut(s) 195, 198
MflI RGATCY 1 cut(s) 101
MluCI AATT 1 cut(s) 24
MnlI CCTC 1 cut(s) 178
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 184
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 3 cut(s) 9, 114, 157
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 129
NdeII GATC 1 cut(s) 101
NlaIII CATG 3 cut(s) 19, 54, 162
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 54, 162
PciI ACATGT 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 180
PkrI GCNGC 1 cut(s) 122
PscI ACATGT 1 cut(s) 158
PshBI ATTAAT 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 101
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 3 cut(s) 9, 114, 157
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 99
SetI ASST 6 cut(s) 37, 63, 100, 118, 125, 170
SfaNI GCATC 2 cut(s) 13, 19
SmiMI CAYNNNNRTG 3 cut(s) 9, 114, 157
Sse9I AATT 1 cut(s) 24
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 97
TasI AATT 1 cut(s) 24
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TseI GCWGC 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 173
VspI ATTAAT 1 cut(s) 23
XceI RCATGY 2 cut(s) 54, 162
XmnI GAANNNNTTC 1 cut(s) 184
XspI CTAG 1 cut(s) 42
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.