pycom17g16570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001044
Physical Location & Seq
Forward (+)
14635608 .. 14635919
312 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g16570.1

Sequence Viewer

Length: 312 bp
ATGATGCGAGAAGTTGGGAAAAACTTCTCCAAAAACGCTCTTTTCATACTCTCCCATGAAGTGACAGTGCCAGGAGCCAACTCGTATAACCAATCCTTAGCTTTATCCATTAAAGAGAACGGAAAAGCTTTCATCTTCAAAATACTTCCGTCAACATTGACGGGAGTCATGCTTGAACAAACTACTTCAAACTCTTTAAGATGCTTGTTTGGATCTTCCATGGAAAGCCCATGGTATTTAGGAATGTGGTGCAACAAGCTTGACTTCAACTCGAATTCATCGGTCTTGCCTTGGGCAGCCGCGGGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.39

Weight (kDa)

8.66

Isoelectric Point (pI)

26.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 302
AciI CCGC 2 cut(s) 300, 302
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 274
AgsI TTSAA 4 cut(s) 139, 176, 189, 268
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 3 cut(s) 101, 128, 259
AluI AGCT 3 cut(s) 101, 128, 259
AlwI GGATC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 1 cut(s) 274
Asp700I GAANNNNTTC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 308
BciT130I CCWGG 1 cut(s) 72
BisI GCNGC 2 cut(s) 297, 300
BlsI GCNGC 2 cut(s) 298, 301
Bme1390I CCNGG 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 191
BoxI GACNNNNGTC 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 97
BsaJI CCNNGG 4 cut(s) 219, 230, 290, 300
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 4 cut(s) 219, 230, 290, 300
BseXI GCAGC 1 cut(s) 308
Bsh1236I CGCG 1 cut(s) 302
Bsp143I GATC 1 cut(s) 212
Bsp19I CCATGG 2 cut(s) 219, 230
BspACI CCGC 2 cut(s) 300, 302
BspFNI CGCG 1 cut(s) 302
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 1 cut(s) 220
BssECI CCNNGG 4 cut(s) 219, 230, 290, 300
BssMI GATC 1 cut(s) 212
BssT1I CCWWGG 3 cut(s) 219, 230, 290
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 97
BstDSI CCRYGG 3 cut(s) 219, 230, 300
BstFNI CGCG 1 cut(s) 302
BstKTI GATC 1 cut(s) 215
BstMBI GATC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 72
BstPAI GACNNNNGTC 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 70
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 308
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BtgI CCRYGG 3 cut(s) 219, 230, 300
BtsIMutI CAGTG 1 cut(s) 72
Cfr42I CCGCGG 1 cut(s) 303
CviAII CATG 4 cut(s) 56, 169, 220, 231
CviJI RGCY 6 cut(s) 77, 101, 128, 228, 259, 299
CviKI_1 RGCY 6 cut(s) 77, 101, 128, 228, 259, 299
DdeI CTNAG 1 cut(s) 97
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
Eco130I CCWWGG 3 cut(s) 219, 230, 290
EcoRI GAATTC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 70
EcoT14I CCWWGG 3 cut(s) 219, 230, 290
ErhI CCWWGG 3 cut(s) 219, 230, 290
FaeI CATG 4 cut(s) 59, 172, 223, 234
FaiI YATR 6 cut(s) 47, 57, 87, 170, 221, 232
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FatI CATG 4 cut(s) 55, 168, 219, 230
FauI CCCGC 1 cut(s) 295
Fnu4HI GCNGC 2 cut(s) 297, 300
Fsp4HI GCNGC 2 cut(s) 297, 300
GluI GCNGC 2 cut(s) 297, 300
Hin1II CATG 4 cut(s) 59, 172, 223, 234
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HindIII AAGCTT 2 cut(s) 126, 257
HinfI GANTC 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 153
Hpy8I GTNNAC 1 cut(s) 153
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 252
HpyF3I CTNAG 1 cut(s) 97
Hsp92II CATG 4 cut(s) 59, 172, 223, 234
KspI CCGCGG 1 cut(s) 303
Kzo9I GATC 1 cut(s) 212
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 2 cut(s) 57, 84
Lsp1109I GCAGC 1 cut(s) 308
LweI GCATC 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 2 cut(s) 127, 207
MflI RGATCY 1 cut(s) 212
MluCI AATT 1 cut(s) 274
MlyI GAGTC 1 cut(s) 174
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 2 cut(s) 111, 197
MspA1I CMGCKG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 302
NcoI CCATGG 2 cut(s) 219, 230
NdeII GATC 1 cut(s) 212
NlaIII CATG 4 cut(s) 59, 172, 223, 234
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 23
PkrI GCNGC 2 cut(s) 298, 301
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PshAI GACNNNNGTC 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 76
PsuI RGATCY 1 cut(s) 212
SacII CCGCGG 1 cut(s) 303
SaqAI TTAA 2 cut(s) 111, 197
SatI GCNGC 2 cut(s) 297, 300
Sau3AI GATC 1 cut(s) 212
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 72
SetI ASST 3 cut(s) 103, 130, 261
SfaNI GCATC 1 cut(s) 191
Sfr303I CCGCGG 1 cut(s) 303
SgrBI CCGCGG 1 cut(s) 303
Sse9I AATT 1 cut(s) 274
SsiI CCGC 2 cut(s) 300, 302
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 3 cut(s) 219, 230, 290
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 272
TaqII GACCGA 1 cut(s) 271
TasI AATT 1 cut(s) 274
TauI GCSGC 1 cut(s) 302
Tru1I TTAA 2 cut(s) 111, 197
Tru9I TTAA 2 cut(s) 111, 197
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 4 cut(s) 34, 72, 121, 267
TspGWI ACGGA 2 cut(s) 135, 138
TspRI CASTG 1 cut(s) 72
XapI RAATTY 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.