transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1580 |
| Acc36I | ACCTGC | 2 cut(s) | 18, 160 |
| AccI | GTMKAC | 1 cut(s) | 3642 |
| AciI | CCGC | 1 cut(s) | 2485 |
| AclI | AACGTT | 1 cut(s) | 200 |
| AclWI | GGATC | 4 cut(s) | 1924, 3183, 3509, 3853 |
| AcoI | YGGCCR | 1 cut(s) | 3378 |
| AfaI | GTAC | 5 cut(s) | 65, 217, 426, 2964, 3340 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 508, 558, 644, 781, 2491 |
| AflII | CTTAAG | 1 cut(s) | 2155 |
| AflIII | ACRYGT | 1 cut(s) | 1833 |
| AjnI | CCWGG | 4 cut(s) | 876, 1241, 1364, 3809 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 21, 53, 1640, 1672, 2822, 2854 |
| AluBI | AGCT | 8 cut(s) | 543, 986, 1775, 1779, 2016, 2075, 2697, 2957 |
| AluI | AGCT | 8 cut(s) | 543, 986, 1775, 1779, 2016, 2075, 2697, 2957 |
| Alw21I | GWGCWC | 3 cut(s) | 3328, 3507, 3784 |
| Alw26I | GTCTC | 1 cut(s) | 3426 |
| Alw44I | GTGCAC | 1 cut(s) | 3780 |
| AlwI | GGATC | 4 cut(s) | 1924, 3183, 3509, 3853 |
| AoxI | GGCC | 4 cut(s) | 510, 3237, 3378, 3699 |
| ApaLI | GTGCAC | 1 cut(s) | 3780 |
| ApeKI | GCWGC | 1 cut(s) | 2487 |
| AseI | ATTAAT | 1 cut(s) | 2981 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1526 |
| AspA2I | CCTAGG | 1 cut(s) | 2341 |
| AspS9I | GGNCC | 5 cut(s) | 437, 1224, 1765, 2036, 2947 |
| AsuHPI | GGTGA | 9 cut(s) | 875, 1281, 1545, 1776, 2399, 2434, 2730, 3580, 3870 |
| AsuII | TTCGAA | 1 cut(s) | 231 |
| AsuNHI | GCTAGC | 1 cut(s) | 1775 |
| AvaII | GGWCC | 5 cut(s) | 437, 1224, 1765, 2036, 2947 |
| AvrII | CCTAGG | 1 cut(s) | 2341 |
| BaeGI | GKGCMC | 2 cut(s) | 1172, 3784 |
| BauI | CACGAG | 1 cut(s) | 3863 |
| BbsI | GAAGAC | 1 cut(s) | 510 |
| Bbv12I | GWGCWC | 3 cut(s) | 3328, 3507, 3784 |
| BbvI | GCAGC | 1 cut(s) | 2499 |
| BccI | CCATC | 5 cut(s) | 1015, 2124, 3277, 3526, 3832 |
| BceAI | ACGGC | 1 cut(s) | 475 |
| BciT130I | CCWGG | 4 cut(s) | 878, 1243, 1366, 3811 |
| BciVI | GTATCC | 1 cut(s) | 3718 |
| BclI | TGATCA | 1 cut(s) | 2145 |
| BcoDI | GTCTC | 1 cut(s) | 3426 |
| BfmI | CTRYAG | 1 cut(s) | 340 |
| BfrI | CTTAAG | 1 cut(s) | 2155 |
| BfuAI | ACCTGC | 2 cut(s) | 18, 160 |
| BfuI | GTATCC | 1 cut(s) | 3718 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3826 |
| BglII | AGATCT | 1 cut(s) | 3477 |
| BisI | GCNGC | 2 cut(s) | 2485, 2488 |
| BlnI | CCTAGG | 1 cut(s) | 2341 |
| BlsI | GCNGC | 2 cut(s) | 2486, 2489 |
| BmcAI | AGTACT | 2 cut(s) | 426, 3340 |
| Bme1390I | CCNGG | 4 cut(s) | 878, 1243, 1366, 3811 |
| Bme18I | GGWCC | 5 cut(s) | 437, 1224, 1765, 2036, 2947 |
| BmgT120I | GGNCC | 5 cut(s) | 437, 1224, 1765, 2036, 2947 |
| BmiI | GGNNCC | 5 cut(s) | 588, 1360, 1767, 2507, 2517 |
| BmrFI | CCNGG | 4 cut(s) | 878, 1243, 1366, 3811 |
| BmsI | GCATC | 7 cut(s) | 73, 164, 308, 829, 1296, 3170, 3693 |
| BmtI | GCTAGC | 1 cut(s) | 1779 |
| BpiI | GAAGAC | 1 cut(s) | 510 |
| BpmI | CTGGAG | 1 cut(s) | 1387 |
| Bpu10I | CCTNAGC | 1 cut(s) | 622 |
| Bpu14I | TTCGAA | 1 cut(s) | 231 |
| BpuEI | CTTGAG | 2 cut(s) | 553, 2436 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2147, 3160, 3476 |
| BsaI | GGTCTC | 1 cut(s) | 3426 |
| BsaJI | CCNNGG | 3 cut(s) | 1241, 2341, 3702 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 508, 558, 644, 781, 2491 |
| Bse1I | ACTGG | 2 cut(s) | 1728, 3496 |
| Bse3DI | GCAATG | 2 cut(s) | 616, 3757 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2147, 3160, 3476 |
| BseBI | CCWGG | 4 cut(s) | 878, 1243, 1366, 3811 |
| BseDI | CCNNGG | 3 cut(s) | 1241, 2341, 3702 |
| BseJI | GATNNNNATC | 3 cut(s) | 2147, 3160, 3476 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 508, 558, 644, 781, 2491 |
| BseMI | GCAATG | 2 cut(s) | 616, 3757 |
| BseNI | ACTGG | 2 cut(s) | 1728, 3496 |
| BseRI | GAGGAG | 3 cut(s) | 1371, 2518, 3780 |
| BseSI | GKGCMC | 2 cut(s) | 1172, 3784 |
| BseXI | GCAGC | 1 cut(s) | 2499 |
| BseYI | CCCAGC | 1 cut(s) | 1917 |
| BshFI | GGCC | 4 cut(s) | 512, 3239, 3380, 3701 |
| BsiHKAI | GWGCWC | 3 cut(s) | 3328, 3507, 3784 |
| BsiSI | CCGG | 1 cut(s) | 3546 |
| BslFI | GGGAC | 1 cut(s) | 678 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 508, 558, 644, 781, 2491 |
| BsmAI | GTCTC | 1 cut(s) | 3426 |
| BsmFI | GGGAC | 1 cut(s) | 678 |
| BsmI | GAATGC | 2 cut(s) | 2684, 3452 |
| BsnI | GGCC | 4 cut(s) | 512, 3239, 3380, 3701 |
| Bso31I | GGTCTC | 1 cut(s) | 3426 |
| Bsp119I | TTCGAA | 1 cut(s) | 231 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1172, 3328, 3507, 3784 |
| Bsp143I | GATC | 9 cut(s) | 1036, 1929, 2145, 3188, 3477, 3514, 3769, 3785, 3858 |
| Bsp19I | CCATGG | 1 cut(s) | 3702 |
| BspACI | CCGC | 1 cut(s) | 2485 |
| BspANI | GGCC | 4 cut(s) | 512, 3239, 3380, 3701 |
| BspLI | GGNNCC | 5 cut(s) | 588, 1360, 1767, 2507, 2517 |
| BspMI | ACCTGC | 2 cut(s) | 18, 160 |
| BspOI | GCTAGC | 1 cut(s) | 1779 |
| BspPI | GGATC | 4 cut(s) | 1924, 3183, 3509, 3853 |
| BspQI | GCTCTTC | 1 cut(s) | 3836 |
| BspT104I | TTCGAA | 1 cut(s) | 231 |
| BspTI | CTTAAG | 1 cut(s) | 2155 |
| BspTNI | GGTCTC | 1 cut(s) | 3426 |
| BsrDI | GCAATG | 2 cut(s) | 616, 3757 |
| BsrI | ACTGG | 2 cut(s) | 1728, 3496 |
| BssECI | CCNNGG | 3 cut(s) | 1241, 2341, 3702 |
| BssMI | GATC | 9 cut(s) | 1036, 1929, 2145, 3188, 3477, 3514, 3769, 3785, 3858 |
| BssSI | CACGAG | 1 cut(s) | 3863 |
| BssT1I | CCWWGG | 2 cut(s) | 2341, 3702 |
| Bst2BI | CACGAG | 1 cut(s) | 3863 |
| Bst2UI | CCWGG | 4 cut(s) | 878, 1243, 1366, 3811 |
| Bst4CI | ACNGT | 6 cut(s) | 658, 692, 1511, 1680, 2862, 3847 |
| Bst6I | CTCTTC | 3 cut(s) | 245, 367, 3836 |
| BstAFI | CTTAAG | 1 cut(s) | 2155 |
| BstBI | TTCGAA | 1 cut(s) | 231 |
| BstC8I | GCNNGC | 3 cut(s) | 106, 1777, 2525 |
| BstDEI | CTNAG | 4 cut(s) | 90, 370, 622, 1173 |
| BstDSI | CCRYGG | 1 cut(s) | 3702 |
| BstKTI | GATC | 9 cut(s) | 1039, 1932, 2148, 3191, 3480, 3517, 3772, 3788, 3861 |
| BstMAI | GTCTC | 1 cut(s) | 3426 |
| BstMBI | GATC | 9 cut(s) | 1036, 1929, 2145, 3188, 3477, 3514, 3769, 3785, 3858 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 2052, 2524, 3458, 3826 |
| BstNI | CCWGG | 4 cut(s) | 878, 1243, 1366, 3811 |
| BstNSI | RCATGY | 4 cut(s) | 108, 1006, 3040, 3332 |
| BstSCI | CCNGG | 4 cut(s) | 876, 1241, 1364, 3809 |
| BstSFI | CTRYAG | 1 cut(s) | 340 |
| BstSLI | GKGCMC | 2 cut(s) | 1172, 3784 |
| BstV1I | GCAGC | 1 cut(s) | 2499 |
| BstV2I | GAAGAC | 1 cut(s) | 510 |
| BstX2I | RGATCY | 1 cut(s) | 3477 |
| BstYI | RGATCY | 1 cut(s) | 3477 |
| BsuI | GTATCC | 1 cut(s) | 3718 |
| BsuRI | GGCC | 4 cut(s) | 512, 3239, 3380, 3701 |
| BtgI | CCRYGG | 1 cut(s) | 3702 |
| BtgZI | GCGATG | 1 cut(s) | 3564 |
| BveI | ACCTGC | 2 cut(s) | 18, 160 |
| Cac8I | GCNNGC | 3 cut(s) | 106, 1777, 2525 |
| Cfr13I | GGNCC | 5 cut(s) | 437, 1224, 1765, 2036, 2947 |
| Csp6I | GTAC | 5 cut(s) | 64, 216, 425, 2963, 3339 |
| CviQI | GTAC | 5 cut(s) | 64, 216, 425, 2963, 3339 |
| DdeI | CTNAG | 4 cut(s) | 90, 370, 622, 1173 |
| DpnI | GATC | 9 cut(s) | 1038, 1931, 2147, 3190, 3479, 3516, 3771, 3787, 3860 |
| DpnII | GATC | 9 cut(s) | 1036, 1929, 2145, 3188, 3477, 3514, 3769, 3785, 3858 |
| DraI | TTTAAA | 3 cut(s) | 264, 2590, 3145 |
| EaeI | YGGCCR | 1 cut(s) | 3378 |
| Eam1104I | CTCTTC | 3 cut(s) | 245, 367, 3836 |
| EarI | CTCTTC | 3 cut(s) | 245, 367, 3836 |
| Eco130I | CCWWGG | 2 cut(s) | 2341, 3702 |
| Eco31I | GGTCTC | 1 cut(s) | 3426 |
| Eco32I | GATATC | 1 cut(s) | 2107 |
| Eco47I | GGWCC | 5 cut(s) | 437, 1224, 1765, 2036, 2947 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1765, 2036, 2947 |
| EcoRI | GAATTC | 1 cut(s) | 700 |
| EcoRII | CCWGG | 4 cut(s) | 876, 1241, 1364, 3809 |
| EcoRV | GATATC | 1 cut(s) | 2107 |
| EcoT14I | CCWWGG | 2 cut(s) | 2341, 3702 |
| EcoT22I | ATGCAT | 2 cut(s) | 1008, 3686 |
| ErhI | CCWWGG | 2 cut(s) | 2341, 3702 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2317, 2349 |
| FaqI | GGGAC | 1 cut(s) | 678 |
| FauNDI | CATATG | 1 cut(s) | 3717 |
| FbaI | TGATCA | 1 cut(s) | 2145 |
| FblI | GTMKAC | 1 cut(s) | 3642 |
| Fnu4HI | GCNGC | 2 cut(s) | 2485, 2488 |
| Fsp4HI | GCNGC | 2 cut(s) | 2485, 2488 |
| GluI | GCNGC | 2 cut(s) | 2485, 2488 |
| GsaI | CCCAGC | 1 cut(s) | 1921 |
| GsuI | CTGGAG | 1 cut(s) | 1387 |
| HaeIII | GGCC | 4 cut(s) | 512, 3239, 3380, 3701 |
| HapII | CCGG | 1 cut(s) | 3546 |
| HincII | GTYRAC | 3 cut(s) | 1962, 3643, 3850 |
| HindII | GTYRAC | 3 cut(s) | 1962, 3643, 3850 |
| HpaII | CCGG | 1 cut(s) | 3546 |
| HphI | GGTGA | 9 cut(s) | 875, 1281, 1545, 1776, 2399, 2434, 2730, 3580, 3870 |
| Hpy166II | GTNNAC | 5 cut(s) | 1676, 1962, 3643, 3782, 3850 |
| Hpy188I | TCNGA | 3 cut(s) | 42, 1251, 3764 |
| Hpy188III | TCNNGA | 8 cut(s) | 1040, 1151, 1199, 1490, 1531, 2453, 3469, 3835 |
| Hpy8I | GTNNAC | 5 cut(s) | 1676, 1962, 3643, 3782, 3850 |
| Hpy99I | CGWCG | 1 cut(s) | 3859 |
| HpyCH4III | ACNGT | 6 cut(s) | 658, 692, 1511, 1680, 2862, 3847 |
| HpyCH4IV | ACGT | 5 cut(s) | 200, 336, 593, 1833, 2537 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 2052, 2524, 3458, 3826 |
| HpyF3I | CTNAG | 4 cut(s) | 90, 370, 622, 1173 |
| HpySE526I | ACGT | 5 cut(s) | 200, 336, 593, 1833, 2537 |
| Ksp22I | TGATCA | 1 cut(s) | 2145 |
| Kzo9I | GATC | 9 cut(s) | 1036, 1929, 2145, 3188, 3477, 3514, 3769, 3785, 3858 |
| LguI | GCTCTTC | 1 cut(s) | 3836 |
| LmnI | GCTCC | 8 cut(s) | 306, 847, 963, 1010, 1358, 2072, 2505, 2515 |
| Lsp1109I | GCAGC | 1 cut(s) | 2499 |
| LweI | GCATC | 7 cut(s) | 73, 164, 308, 829, 1296, 3170, 3693 |
| MaeII | ACGT | 5 cut(s) | 200, 336, 593, 1833, 2537 |
| MaeIII | GTNAC | 3 cut(s) | 1182, 2327, 3755 |
| MalI | GATC | 9 cut(s) | 1038, 1931, 2147, 3190, 3479, 3516, 3771, 3787, 3860 |
| MboI | GATC | 9 cut(s) | 1036, 1929, 2145, 3188, 3477, 3514, 3769, 3785, 3858 |
| MfeI | CAATTG | 3 cut(s) | 1471, 2848, 3287 |
| MflI | RGATCY | 1 cut(s) | 3477 |
| MhlI | GDGCHC | 4 cut(s) | 1172, 3328, 3507, 3784 |
| MlyI | GAGTC | 5 cut(s) | 1873, 1901, 2314, 3079, 3108 |
| MmeI | TCCRAC | 8 cut(s) | 435, 614, 872, 897, 2300, 2520, 2528, 3455 |
| Mph1103I | ATGCAT | 2 cut(s) | 1008, 3686 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1526 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1005, 2114, 3716, 3787 |
| MspCI | CTTAAG | 1 cut(s) | 2155 |
| MspI | CCGG | 1 cut(s) | 3546 |
| MspR9I | CCNGG | 4 cut(s) | 878, 1243, 1366, 3811 |
| MunI | CAATTG | 3 cut(s) | 1471, 2848, 3287 |
| Mva1269I | GAATGC | 2 cut(s) | 2684, 3452 |
| MvaI | CCWGG | 4 cut(s) | 878, 1243, 1366, 3811 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 2052, 2524, 3458, 3826 |
| NcoI | CCATGG | 1 cut(s) | 3702 |
| NdeI | CATATG | 1 cut(s) | 3717 |
| NdeII | GATC | 9 cut(s) | 1036, 1929, 2145, 3188, 3477, 3514, 3769, 3785, 3858 |
| NheI | GCTAGC | 1 cut(s) | 1775 |
| NlaIV | GGNNCC | 5 cut(s) | 588, 1360, 1767, 2507, 2517 |
| NmuCI | GTSAC | 1 cut(s) | 1182 |
| NsiI | ATGCAT | 2 cut(s) | 1008, 3686 |
| NspI | RCATGY | 4 cut(s) | 108, 1006, 3040, 3332 |
| NspV | TTCGAA | 1 cut(s) | 231 |
| PacI | TTAATTAA | 1 cut(s) | 3012 |
| PaeI | GCATGC | 1 cut(s) | 108 |
| PciSI | GCTCTTC | 1 cut(s) | 3836 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3851 |
| PctI | GAATGC | 2 cut(s) | 2684, 3452 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1526 |
| PfeI | GAWTC | 6 cut(s) | 1246, 2219, 2346, 3044, 3360, 3465 |
| PfoI | TCCNGGA | 1 cut(s) | 3809 |
| PkrI | GCNGC | 2 cut(s) | 2486, 2489 |
| PleI | GAGTC | 5 cut(s) | 1872, 1900, 2313, 3078, 3107 |
| PpsI | GAGTC | 5 cut(s) | 1872, 1900, 2313, 3078, 3107 |
| PpuMI | RGGWCCY | 3 cut(s) | 1765, 2036, 2947 |
| PshBI | ATTAAT | 1 cut(s) | 2981 |
| PsiI | TTATAA | 1 cut(s) | 1580 |
| Psp1406I | AACGTT | 1 cut(s) | 200 |
| Psp5II | RGGWCCY | 3 cut(s) | 1765, 2036, 2947 |
| Psp6I | CCWGG | 4 cut(s) | 876, 1241, 1364, 3809 |
| PspFI | CCCAGC | 1 cut(s) | 1917 |
| PspGI | CCWGG | 4 cut(s) | 876, 1241, 1364, 3809 |
| PspN4I | GGNNCC | 5 cut(s) | 588, 1360, 1767, 2507, 2517 |
| PspPI | GGNCC | 5 cut(s) | 437, 1224, 1765, 2036, 2947 |
| PspPPI | RGGWCCY | 3 cut(s) | 1765, 2036, 2947 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1918, 1950 |
| PsuI | RGATCY | 1 cut(s) | 3477 |
| RsaI | GTAC | 5 cut(s) | 65, 217, 426, 2964, 3340 |
| RsaNI | GTAC | 5 cut(s) | 64, 216, 425, 2963, 3339 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1005, 2114, 3716, 3787 |
| SalI | GTCGAC | 1 cut(s) | 3641 |
| SapI | GCTCTTC | 1 cut(s) | 3836 |
| SatI | GCNGC | 2 cut(s) | 2485, 2488 |
| Sau3AI | GATC | 9 cut(s) | 1036, 1929, 2145, 3188, 3477, 3514, 3769, 3785, 3858 |
| Sau96I | GGNCC | 5 cut(s) | 437, 1224, 1765, 2036, 2947 |
| ScaI | AGTACT | 2 cut(s) | 426, 3340 |
| SchI | GAGTC | 5 cut(s) | 1873, 1901, 2314, 3079, 3108 |
| ScrFI | CCNGG | 4 cut(s) | 878, 1243, 1366, 3811 |
| SduI | GDGCHC | 4 cut(s) | 1172, 3328, 3507, 3784 |
| SfaNI | GCATC | 7 cut(s) | 73, 164, 308, 829, 1296, 3170, 3693 |
| SfcI | CTRYAG | 1 cut(s) | 340 |
| SfuI | TTCGAA | 1 cut(s) | 231 |
| SinI | GGWCC | 5 cut(s) | 437, 1224, 1765, 2036, 2947 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1005, 2114, 3716, 3787 |
| SmlI | CTYRAG | 3 cut(s) | 532, 2155, 2451 |
| SmoI | CTYRAG | 3 cut(s) | 532, 2155, 2451 |
| SphI | GCATGC | 1 cut(s) | 108 |
| SsiI | CCGC | 1 cut(s) | 2485 |
| SspI | AATATT | 4 cut(s) | 315, 402, 1056, 2182 |
| StyD4I | CCNGG | 4 cut(s) | 876, 1241, 1364, 3809 |
| StyI | CCWWGG | 2 cut(s) | 2341, 3702 |
| TaaI | ACNGT | 6 cut(s) | 658, 692, 1511, 1680, 2862, 3847 |
| TaiI | ACGT | 5 cut(s) | 203, 339, 596, 1836, 2540 |
| TaqI | TCGA | 4 cut(s) | 231, 982, 3463, 3642 |
| TatI | WGTACW | 3 cut(s) | 424, 2962, 3338 |
| TauI | GCSGC | 1 cut(s) | 2487 |
| TfiI | GAWTC | 6 cut(s) | 1246, 2219, 2346, 3044, 3360, 3465 |
| TseFI | GTSAC | 1 cut(s) | 1182 |
| TseI | GCWGC | 1 cut(s) | 2487 |
| Tsp45I | GTSAC | 1 cut(s) | 1182 |
| TspGWI | ACGGA | 1 cut(s) | 95 |
| Vha464I | CTTAAG | 1 cut(s) | 2155 |
| VneI | GTGCAC | 1 cut(s) | 3780 |
| VpaK11BI | GGWCC | 5 cut(s) | 437, 1224, 1765, 2036, 2947 |
| VspI | ATTAAT | 1 cut(s) | 2981 |
| XbaI | TCTAGA | 2 cut(s) | 1150, 1198 |
| XceI | RCATGY | 4 cut(s) | 108, 1006, 3040, 3332 |
| XmaJI | CCTAGG | 1 cut(s) | 2341 |
| XmiI | GTMKAC | 1 cut(s) | 3642 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1526 |
| ZrmI | AGTACT | 2 cut(s) | 426, 3340 |
| Zsp2I | ATGCAT | 2 cut(s) | 1008, 3686 |