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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1862 |
| Acc36I | ACCTGC | 1 cut(s) | 723 |
| AccB1I | GGYRCC | 1 cut(s) | 739 |
| AciI | CCGC | 3 cut(s) | 427, 1442, 1602 |
| AclWI | GGATC | 1 cut(s) | 401 |
| AcoI | YGGCCR | 1 cut(s) | 465 |
| AcsI | RAATTY | 6 cut(s) | 864, 972, 1306, 1369, 1789, 1832 |
| AflII | CTTAAG | 1 cut(s) | 983 |
| AjnI | CCWGG | 1 cut(s) | 677 |
| AleI | CACNNNNGTG | 1 cut(s) | 293 |
| AluBI | AGCT | 2 cut(s) | 121, 155 |
| AluI | AGCT | 2 cut(s) | 121, 155 |
| Alw21I | GWGCWC | 2 cut(s) | 835, 1002 |
| Alw26I | GTCTC | 3 cut(s) | 571, 785, 1613 |
| AlwI | GGATC | 1 cut(s) | 401 |
| Ama87I | CYCGRG | 2 cut(s) | 327, 995 |
| AoxI | GGCC | 1 cut(s) | 465 |
| ApoI | RAATTY | 6 cut(s) | 864, 972, 1306, 1369, 1789, 1832 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 74, 106, 316, 348 |
| AspS9I | GGNCC | 3 cut(s) | 191, 324, 1109 |
| AsuHPI | GGTGA | 4 cut(s) | 280, 502, 1352, 1809 |
| AvaI | CYCGRG | 2 cut(s) | 327, 995 |
| AvaII | GGWCC | 3 cut(s) | 191, 324, 1109 |
| BaeGI | GKGCMC | 3 cut(s) | 266, 719, 845 |
| BanI | GGYRCC | 1 cut(s) | 739 |
| BbsI | GAAGAC | 2 cut(s) | 654, 922 |
| Bbv12I | GWGCWC | 2 cut(s) | 835, 1002 |
| BccI | CCATC | 7 cut(s) | 105, 368, 392, 695, 982, 1500, 1598 |
| BceAI | ACGGC | 3 cut(s) | 518, 727, 1032 |
| BciT130I | CCWGG | 1 cut(s) | 679 |
| BcoDI | GTCTC | 3 cut(s) | 571, 785, 1613 |
| BfaI | CTAG | 7 cut(s) | 395, 912, 1164, 1182, 1319, 1799, 1995 |
| BfrI | CTTAAG | 1 cut(s) | 983 |
| BfuAI | ACCTGC | 1 cut(s) | 723 |
| BisI | GCNGC | 2 cut(s) | 1442, 1602 |
| BlsI | GCNGC | 2 cut(s) | 1443, 1603 |
| Bme1390I | CCNGG | 1 cut(s) | 679 |
| Bme18I | GGWCC | 3 cut(s) | 191, 324, 1109 |
| BmeT110I | CYCGRG | 2 cut(s) | 327, 995 |
| BmgT120I | GGNCC | 3 cut(s) | 191, 324, 1109 |
| BmiI | GGNNCC | 5 cut(s) | 42, 326, 741, 822, 993 |
| BmrFI | CCNGG | 1 cut(s) | 679 |
| BmsI | GCATC | 4 cut(s) | 243, 800, 1866, 1958 |
| BpiI | GAAGAC | 2 cut(s) | 654, 922 |
| BpmI | CTGGAG | 2 cut(s) | 661, 1409 |
| BpuEI | CTTGAG | 1 cut(s) | 562 |
| BsaJI | CCNNGG | 5 cut(s) | 111, 664, 678, 743, 1004 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 222, 252, 283, 313 |
| Bse1I | ACTGG | 2 cut(s) | 245, 1737 |
| Bse3DI | GCAATG | 1 cut(s) | 676 |
| BseBI | CCWGG | 1 cut(s) | 679 |
| BseDI | CCNNGG | 5 cut(s) | 111, 664, 678, 743, 1004 |
| BseGI | GGATG | 8 cut(s) | 97, 258, 815, 1393, 1401, 1503, 1590, 1977 |
| BseMI | GCAATG | 1 cut(s) | 676 |
| BseMII | CTCAG | 1 cut(s) | 1644 |
| BseNI | ACTGG | 2 cut(s) | 245, 1737 |
| BseRI | GAGGAG | 1 cut(s) | 403 |
| BseSI | GKGCMC | 3 cut(s) | 266, 719, 845 |
| BsgI | GTGCAG | 1 cut(s) | 1404 |
| BshFI | GGCC | 1 cut(s) | 467 |
| BshNI | GGYRCC | 1 cut(s) | 739 |
| BsiHKAI | GWGCWC | 2 cut(s) | 835, 1002 |
| BsiHKCI | CYCGRG | 2 cut(s) | 327, 995 |
| BsmAI | GTCTC | 3 cut(s) | 571, 785, 1613 |
| BsmBI | CGTCTC | 1 cut(s) | 785 |
| BsmI | GAATGC | 1 cut(s) | 1356 |
| BsnI | GGCC | 1 cut(s) | 467 |
| BsoBI | CYCGRG | 2 cut(s) | 327, 995 |
| Bsp1286I | GDGCHC | 5 cut(s) | 266, 719, 835, 845, 1002 |
| Bsp143I | GATC | 1 cut(s) | 406 |
| Bsp19I | CCATGG | 2 cut(s) | 111, 664 |
| BspACI | CCGC | 3 cut(s) | 427, 1442, 1602 |
| BspANI | GGCC | 1 cut(s) | 467 |
| BspCNI | CTCAG | 1 cut(s) | 1645 |
| BspLI | GGNNCC | 5 cut(s) | 42, 326, 741, 822, 993 |
| BspMI | ACCTGC | 1 cut(s) | 723 |
| BspPI | GGATC | 1 cut(s) | 401 |
| BspQI | GCTCTTC | 1 cut(s) | 1650 |
| BspT107I | GGYRCC | 1 cut(s) | 739 |
| BspTI | CTTAAG | 1 cut(s) | 983 |
| BsrDI | GCAATG | 1 cut(s) | 676 |
| BsrI | ACTGG | 2 cut(s) | 245, 1737 |
| BssECI | CCNNGG | 5 cut(s) | 111, 664, 678, 743, 1004 |
| BssMI | GATC | 1 cut(s) | 406 |
| BssT1I | CCWWGG | 3 cut(s) | 111, 664, 1004 |
| Bst2UI | CCWGG | 1 cut(s) | 679 |
| Bst4CI | ACNGT | 2 cut(s) | 295, 487 |
| Bst6I | CTCTTC | 2 cut(s) | 529, 1650 |
| BstAFI | CTTAAG | 1 cut(s) | 983 |
| BstC8I | GCNNGC | 3 cut(s) | 434, 1606, 1783 |
| BstDEI | CTNAG | 1 cut(s) | 1653 |
| BstDSI | CCRYGG | 3 cut(s) | 111, 664, 743 |
| BstF5I | GGATG | 8 cut(s) | 97, 258, 815, 1393, 1401, 1503, 1590, 1977 |
| BstKTI | GATC | 1 cut(s) | 409 |
| BstMAI | GTCTC | 3 cut(s) | 571, 785, 1613 |
| BstMBI | GATC | 1 cut(s) | 406 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 181, 433 |
| BstNI | CCWGG | 1 cut(s) | 679 |
| BstNSI | RCATGY | 3 cut(s) | 436, 440, 1785 |
| BstSCI | CCNGG | 1 cut(s) | 677 |
| BstSLI | GKGCMC | 3 cut(s) | 266, 719, 845 |
| BstV2I | GAAGAC | 2 cut(s) | 654, 922 |
| BstX2I | RGATCY | 1 cut(s) | 406 |
| BstYI | RGATCY | 1 cut(s) | 406 |
| BsuRI | GGCC | 1 cut(s) | 467 |
| BtgI | CCRYGG | 3 cut(s) | 111, 664, 743 |
| BtgZI | GCGATG | 1 cut(s) | 1981 |
| BtsCI | GGATG | 8 cut(s) | 97, 258, 815, 1393, 1401, 1503, 1590, 1977 |
| BtsIMutI | CAGTG | 1 cut(s) | 291 |
| BveI | ACCTGC | 1 cut(s) | 723 |
| Cac8I | GCNNGC | 3 cut(s) | 434, 1606, 1783 |
| Cfr13I | GGNCC | 3 cut(s) | 191, 324, 1109 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1446, 1481 |
| CviAII | CATG | 9 cut(s) | 112, 132, 433, 437, 665, 723, 1707, 1782, 1925 |
| DdeI | CTNAG | 1 cut(s) | 1653 |
| DpnI | GATC | 1 cut(s) | 408 |
| DpnII | GATC | 1 cut(s) | 406 |
| DraI | TTTAAA | 1 cut(s) | 1305 |
| EaeI | YGGCCR | 1 cut(s) | 465 |
| Eam1104I | CTCTTC | 2 cut(s) | 529, 1650 |
| EarI | CTCTTC | 2 cut(s) | 529, 1650 |
| Eco130I | CCWWGG | 3 cut(s) | 111, 664, 1004 |
| Eco32I | GATATC | 1 cut(s) | 462 |
| Eco47I | GGWCC | 3 cut(s) | 191, 324, 1109 |
| Eco88I | CYCGRG | 2 cut(s) | 327, 995 |
| EcoO109I | RGGNCCY | 2 cut(s) | 191, 1109 |
| EcoRI | GAATTC | 1 cut(s) | 864 |
| EcoRII | CCWGG | 1 cut(s) | 677 |
| EcoRV | GATATC | 1 cut(s) | 462 |
| EcoT14I | CCWWGG | 3 cut(s) | 111, 664, 1004 |
| EcoT22I | ATGCAT | 3 cut(s) | 438, 815, 1973 |
| ErhI | CCWWGG | 3 cut(s) | 111, 664, 1004 |
| Esp3I | CGTCTC | 1 cut(s) | 785 |
| FaeI | CATG | 9 cut(s) | 115, 135, 436, 440, 668, 726, 1710, 1785, 1928 |
| FatI | CATG | 9 cut(s) | 111, 131, 432, 436, 664, 722, 1706, 1781, 1924 |
| Fnu4HI | GCNGC | 2 cut(s) | 1442, 1602 |
| FokI | GGATG | 8 cut(s) | 84, 265, 822, 1380, 1388, 1490, 1577, 1964 |
| Fsp4HI | GCNGC | 2 cut(s) | 1442, 1602 |
| FspBI | CTAG | 7 cut(s) | 395, 912, 1164, 1182, 1319, 1799, 1995 |
| GluI | GCNGC | 2 cut(s) | 1442, 1602 |
| GsuI | CTGGAG | 2 cut(s) | 661, 1409 |
| HaeIII | GGCC | 1 cut(s) | 467 |
| Hin1II | CATG | 9 cut(s) | 115, 135, 436, 440, 668, 726, 1710, 1785, 1928 |
| HphI | GGTGA | 4 cut(s) | 280, 502, 1352, 1809 |
| Hpy166II | GTNNAC | 1 cut(s) | 475 |
| Hpy188I | TCNGA | 5 cut(s) | 1216, 1269, 1329, 1654, 2006 |
| Hpy188III | TCNNGA | 6 cut(s) | 80, 302, 352, 995, 1426, 1757 |
| Hpy8I | GTNNAC | 1 cut(s) | 475 |
| HpyCH4III | ACNGT | 2 cut(s) | 295, 487 |
| HpyCH4IV | ACGT | 2 cut(s) | 794, 1897 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 181, 433 |
| HpyF3I | CTNAG | 1 cut(s) | 1653 |
| HpySE526I | ACGT | 2 cut(s) | 794, 1897 |
| Hsp92II | CATG | 9 cut(s) | 115, 135, 436, 440, 668, 726, 1710, 1785, 1928 |
| Kzo9I | GATC | 1 cut(s) | 406 |
| LguI | GCTCTTC | 1 cut(s) | 1650 |
| LmnI | GCTCC | 5 cut(s) | 113, 228, 820, 830, 997 |
| LweI | GCATC | 4 cut(s) | 243, 800, 1866, 1958 |
| MaeI | CTAG | 7 cut(s) | 395, 912, 1164, 1182, 1319, 1799, 1995 |
| MaeII | ACGT | 2 cut(s) | 794, 1897 |
| MaeIII | GTNAC | 2 cut(s) | 295, 547 |
| MalI | GATC | 1 cut(s) | 408 |
| MboI | GATC | 1 cut(s) | 406 |
| MboII | GAAGA | 9 cut(s) | 59, 277, 516, 659, 696, 927, 1256, 1445, 1637 |
| MfeI | CAATTG | 1 cut(s) | 1633 |
| MflI | RGATCY | 1 cut(s) | 406 |
| MhlI | GDGCHC | 5 cut(s) | 266, 719, 835, 845, 1002 |
| MlyI | GAGTC | 3 cut(s) | 292, 385, 668 |
| MmeI | TCCRAC | 2 cut(s) | 12, 265 |
| Mph1103I | ATGCAT | 3 cut(s) | 438, 815, 1973 |
| MseI | TTAA | 9 cut(s) | 117, 659, 965, 984, 1169, 1304, 1340, 1722, 1773 |
| MslI | CAYNNNNRTG | 3 cut(s) | 218, 293, 669 |
| MspCI | CTTAAG | 1 cut(s) | 983 |
| MspR9I | CCNGG | 1 cut(s) | 679 |
| MunI | CAATTG | 1 cut(s) | 1633 |
| Mva1269I | GAATGC | 1 cut(s) | 1356 |
| MvaI | CCWGG | 1 cut(s) | 679 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 181, 433 |
| NcoI | CCATGG | 2 cut(s) | 111, 664 |
| NdeII | GATC | 1 cut(s) | 406 |
| NlaIII | CATG | 9 cut(s) | 115, 135, 436, 440, 668, 726, 1710, 1785, 1928 |
| NlaIV | GGNNCC | 5 cut(s) | 42, 326, 741, 822, 993 |
| NmeAIII | GCCGAG | 1 cut(s) | 1494 |
| NmuCI | GTSAC | 2 cut(s) | 295, 547 |
| NsiI | ATGCAT | 3 cut(s) | 438, 815, 1973 |
| NspI | RCATGY | 3 cut(s) | 436, 440, 1785 |
| OliI | CACNNNNGTG | 1 cut(s) | 293 |
| PaeI | GCATGC | 2 cut(s) | 436, 1785 |
| PciSI | GCTCTTC | 1 cut(s) | 1650 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 800 |
| PctI | GAATGC | 1 cut(s) | 1356 |
| PfeI | GAWTC | 9 cut(s) | 883, 901, 924, 942, 1270, 1330, 1625, 1904, 1991 |
| PkrI | GCNGC | 2 cut(s) | 1443, 1603 |
| PleI | GAGTC | 3 cut(s) | 292, 384, 668 |
| PpsI | GAGTC | 3 cut(s) | 292, 384, 668 |
| PpuMI | RGGWCCY | 2 cut(s) | 191, 1109 |
| PsiI | TTATAA | 1 cut(s) | 1862 |
| Psp5II | RGGWCCY | 2 cut(s) | 191, 1109 |
| Psp6I | CCWGG | 1 cut(s) | 677 |
| PspGI | CCWGG | 1 cut(s) | 677 |
| PspN4I | GGNNCC | 5 cut(s) | 42, 326, 741, 822, 993 |
| PspPI | GGNCC | 3 cut(s) | 191, 324, 1109 |
| PspPPI | RGGWCCY | 2 cut(s) | 191, 1109 |
| PsuI | RGATCY | 1 cut(s) | 406 |
| RseI | CAYNNNNRTG | 3 cut(s) | 218, 293, 669 |
| SapI | GCTCTTC | 1 cut(s) | 1650 |
| SaqAI | TTAA | 9 cut(s) | 117, 659, 965, 984, 1169, 1304, 1340, 1722, 1773 |
| SatI | GCNGC | 2 cut(s) | 1442, 1602 |
| Sau3AI | GATC | 1 cut(s) | 406 |
| Sau96I | GGNCC | 3 cut(s) | 191, 324, 1109 |
| SchI | GAGTC | 3 cut(s) | 292, 385, 668 |
| ScrFI | CCNGG | 1 cut(s) | 679 |
| SduI | GDGCHC | 5 cut(s) | 266, 719, 835, 845, 1002 |
| SfaNI | GCATC | 4 cut(s) | 243, 800, 1866, 1958 |
| SinI | GGWCC | 3 cut(s) | 191, 324, 1109 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 218, 293, 669 |
| SmlI | CTYRAG | 2 cut(s) | 577, 983 |
| SmoI | CTYRAG | 2 cut(s) | 577, 983 |
| SphI | GCATGC | 2 cut(s) | 436, 1785 |
| SsiI | CCGC | 3 cut(s) | 427, 1442, 1602 |
| SspMI | CTAG | 7 cut(s) | 395, 912, 1164, 1182, 1319, 1799, 1995 |
| StyD4I | CCNGG | 1 cut(s) | 677 |
| StyI | CCWWGG | 3 cut(s) | 111, 664, 1004 |
| TaaI | ACNGT | 2 cut(s) | 295, 487 |
| TaiI | ACGT | 2 cut(s) | 797, 1900 |
| TaqI | TCGA | 1 cut(s) | 1874 |
| TauI | GCSGC | 2 cut(s) | 1444, 1604 |
| TfiI | GAWTC | 9 cut(s) | 883, 901, 924, 942, 1270, 1330, 1625, 1904, 1991 |
| Tru1I | TTAA | 9 cut(s) | 117, 659, 965, 984, 1169, 1304, 1340, 1722, 1773 |
| Tru9I | TTAA | 9 cut(s) | 117, 659, 965, 984, 1169, 1304, 1340, 1722, 1773 |
| TscAI | CASTG | 1 cut(s) | 298 |
| TseFI | GTSAC | 2 cut(s) | 295, 547 |
| Tsp45I | GTSAC | 2 cut(s) | 295, 547 |
| TspRI | CASTG | 1 cut(s) | 298 |
| Vha464I | CTTAAG | 1 cut(s) | 983 |
| VpaK11BI | GGWCC | 3 cut(s) | 191, 324, 1109 |
| XapI | RAATTY | 6 cut(s) | 864, 972, 1306, 1369, 1789, 1832 |
| XceI | RCATGY | 3 cut(s) | 436, 440, 1785 |
| XspI | CTAG | 7 cut(s) | 395, 912, 1164, 1182, 1319, 1799, 1995 |
| Zsp2I | ATGCAT | 3 cut(s) | 438, 815, 1973 |