MD12G1009800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0001044
Physical Location & Seq
Reverse (-)
1007343 .. 1007993
651 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1009800.v1.1.491

Sequence Viewer

Length: 243 bp
ATGCATGCAAGTTGTAGGACTTATACCCTTGTCGGCCAATGGCTGTTTTGTATTCCTTCAACACCCTCACCAACTTTTCTTCTTCTTGTGCCTTCAAAGGATGATGGCTGTATCACTGAAGGAAGCATCTTATTAGTAAAAACAAAATCTGAAATTAGGATTGGAAGCTTACCATATTGTTGTGGCAGCAATTTTAGGGCAACCACCATCTCAGCTACTTCTTCACAAGGGGGCACGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.49

Weight (kDa)

8.36

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 34
AcuI CTGAAG 1 cut(s) 138
AgsI TTSAA 2 cut(s) 60, 96
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AluBI AGCT 2 cut(s) 168, 215
AluI AGCT 2 cut(s) 168, 215
AoxI GGCC 1 cut(s) 34
ApeKI GCWGC 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 236
BbvI GCAGC 1 cut(s) 198
BccI CCATC 2 cut(s) 98, 215
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
BmsI GCATC 1 cut(s) 135
BseGI GGATG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 225
BseSI GKGCMC 1 cut(s) 236
BseXI GCAGC 1 cut(s) 198
BshFI GGCC 1 cut(s) 36
BsnI GGCC 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 236
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 8
BstSLI GKGCMC 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 36
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 6
CviAII CATG 2 cut(s) 5, 240
CviJI RGCY 5 cut(s) 36, 43, 108, 168, 215
CviKI_1 RGCY 5 cut(s) 36, 43, 108, 168, 215
DdeI CTNAG 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 138
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 8, 243
FaiI YATR 4 cut(s) 6, 24, 175, 241
FatI CATG 2 cut(s) 4, 239
Fnu4HI GCNGC 1 cut(s) 187
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 187
GluI GCNGC 1 cut(s) 187
HaeIII GGCC 1 cut(s) 36
Hin1II CATG 2 cut(s) 8, 243
HindIII AAGCTT 1 cut(s) 166
HphI GGTGA 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 151
HpyAV CCTTC 3 cut(s) 66, 102, 113
HpyCH4V TGCA 2 cut(s) 4, 8
HpyF3I CTNAG 1 cut(s) 211
Hsp92II CATG 2 cut(s) 8, 243
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 1 cut(s) 135
MboII GAAGA 3 cut(s) 71, 74, 213
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 2 cut(s) 153, 190
MnlI CCTC 1 cut(s) 76
Mph1103I ATGCAT 1 cut(s) 6
NlaIII CATG 2 cut(s) 8, 243
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 188
SatI GCNGC 1 cut(s) 187
SduI GDGCHC 1 cut(s) 236
SetI ASST 2 cut(s) 170, 217
SfaNI GCATC 1 cut(s) 135
SgeI CNNG 5 cut(s) 17, 21, 41, 98, 239
SphI GCATGC 1 cut(s) 8
Sse9I AATT 2 cut(s) 153, 190
TasI AATT 2 cut(s) 153, 190
TscAI CASTG 1 cut(s) 121
TseI GCWGC 1 cut(s) 186
TspRI CASTG 1 cut(s) 121
XceI RCATGY 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.