pycom12529g00020

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012529
Physical Location & Seq
Forward (+)
6877 .. 7230
354 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12529g00020.1

Sequence Viewer

Length: 354 bp
ATGACATTTATGGATGCACCTAAATCAAGCATGGCATGTTCAAAACGATTATGTCCAATCACACAAGGAATCGTGAAACTACCGGGGTCTTTGCACTTGGTAGGCAGTTTACGTTGCAAAACAGCGGACACATTCTCGCTTACCTTCACTACCTCTTTGTTTGCCCTTCTTCTCTTTGTATTGCATAGGTCCTTGAGGAATTTAGCATACTTTGGAACCTGTTTGATTGCATCGAGAAGCGGTATGTTCACTTGCACCTTCCGGAACGTTTCAAGAATGTCCTTCTCGCTTTCTTCCTTTTTTTTCTTGCATGAACCTGCGAGGAAAAAGTACATTGGGCAGATTAGGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.13

Weight (kDa)

10.45

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 325
AccIII TCCGGA 1 cut(s) 261
AciI CCGC 2 cut(s) 125, 240
AclI AACGTT 1 cut(s) 267
AcsI RAATTY 1 cut(s) 199
AfaI GTAC 1 cut(s) 332
AgsI TTSAA 2 cut(s) 42, 273
AjiI CACGTC 1 cut(s) 351
Aor13HI TCCGGA 1 cut(s) 261
ApoI RAATTY 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 189
AsuC2I CCSGG 1 cut(s) 84
AvaII GGWCC 1 cut(s) 189
BcnI CCSGG 1 cut(s) 84
BfuAI ACCTGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 189
BmgBI CACGTC 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 2 cut(s) 4, 239
BpuEI CTTGAG 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 83
BsaWI WCCGGW 1 cut(s) 261
BseAI TCCGGA 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 19
BsiSI CCGG 2 cut(s) 83, 262
Bsp13I TCCGGA 1 cut(s) 261
BspACI CCGC 2 cut(s) 125, 240
BspEI TCCGGA 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 325
BssECI CCNNGG 1 cut(s) 83
BstF5I GGATG 1 cut(s) 19
BstNSI RCATGY 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 82
BtrI CACGTC 1 cut(s) 351
BtsCI GGATG 1 cut(s) 19
BveI ACCTGC 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 331
CviAII CATG 3 cut(s) 31, 36, 311
CviQI GTAC 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 189
FaeI CATG 3 cut(s) 34, 39, 314
FaiI YATR 8 cut(s) 11, 32, 37, 52, 186, 208, 245, 312
FatI CATG 3 cut(s) 30, 35, 310
FokI GGATG 1 cut(s) 26
HapII CCGG 2 cut(s) 83, 262
Hin1II CATG 3 cut(s) 34, 39, 314
HinfI GANTC 1 cut(s) 69
HpaII CCGG 2 cut(s) 83, 262
Hpy166II GTNNAC 2 cut(s) 110, 249
Hpy188III TCNNGA 4 cut(s) 73, 234, 262, 273
Hpy8I GTNNAC 2 cut(s) 110, 249
HpyAV CCTTC 4 cut(s) 154, 176, 268, 292
HpyCH4IV ACGT 3 cut(s) 112, 267, 350
HpyCH4V TGCA 7 cut(s) 17, 94, 117, 184, 230, 255, 310
HpySE526I ACGT 3 cut(s) 112, 267, 350
Hsp92II CATG 3 cut(s) 34, 39, 314
Kpn2I TCCGGA 1 cut(s) 261
LpnPI CCDG 4 cut(s) 96, 232, 275, 330
LweI GCATC 2 cut(s) 4, 239
MaeII ACGT 3 cut(s) 112, 267, 350
MboII GAAGA 2 cut(s) 161, 285
MluCI AATT 1 cut(s) 199
MnlI CCTC 3 cut(s) 163, 189, 315
MroI TCCGGA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 2 cut(s) 83, 262
MspR9I CCNGG 1 cut(s) 84
NciI CCSGG 1 cut(s) 84
NlaIII CATG 3 cut(s) 34, 39, 314
NlaIV GGNNCC 1 cut(s) 217
NspI RCATGY 1 cut(s) 39
PfeI GAWTC 1 cut(s) 69
PpuMI RGGWCCY 1 cut(s) 189
Psp1406I AACGTT 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 189
PspPPI RGGWCCY 1 cut(s) 189
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
Sau96I GGNCC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 84
SfaNI GCATC 2 cut(s) 4, 239
SinI GGWCC 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 1 cut(s) 199
SsiI CCGC 2 cut(s) 125, 240
StyD4I CCNGG 1 cut(s) 82
TaiI ACGT 3 cut(s) 115, 270, 353
TaqI TCGA 1 cut(s) 233
TasI AATT 1 cut(s) 199
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 327
VpaK11BI GGWCC 1 cut(s) 189
XapI RAATTY 1 cut(s) 199
XceI RCATGY 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.