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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2832 |
| AarI | CACCTGC | 2 cut(s) | 2294, 3159 |
| Acc36I | ACCTGC | 3 cut(s) | 1731, 2294, 3159 |
| AccB1I | GGYRCC | 1 cut(s) | 2484 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2035, 2242 |
| AccI | GTMKAC | 1 cut(s) | 246 |
| AccII | CGCG | 1 cut(s) | 2822 |
| AclWI | GGATC | 5 cut(s) | 292, 801, 814, 1348, 2158 |
| AcoI | YGGCCR | 5 cut(s) | 461, 694, 1107, 1690, 1746 |
| AcyI | GRCGYC | 2 cut(s) | 1813, 2485 |
| AdeI | CACNNNGTG | 1 cut(s) | 2217 |
| AfaI | GTAC | 2 cut(s) | 1973, 2221 |
| AfeI | AGCGCT | 1 cut(s) | 159 |
| AflIII | ACRYGT | 2 cut(s) | 1567, 1632 |
| AjnI | CCWGG | 3 cut(s) | 802, 930, 1807 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 955, 987, 2634, 2666 |
| AluBI | AGCT | 3 cut(s) | 799, 1139, 2015 |
| AluI | AGCT | 3 cut(s) | 799, 1139, 2015 |
| Alw26I | GTCTC | 5 cut(s) | 181, 994, 1552, 1623, 2364 |
| AlwI | GGATC | 5 cut(s) | 292, 801, 814, 1348, 2158 |
| Ama87I | CYCGRG | 2 cut(s) | 1476, 2684 |
| Aor51HI | AGCGCT | 1 cut(s) | 159 |
| AoxI | GGCC | 8 cut(s) | 461, 694, 1107, 1425, 1452, 1690, 1746, 2293 |
| ApeKI | GCWGC | 6 cut(s) | 177, 1726, 2191, 3057, 3175, 3341 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2367, 2399 |
| AspLEI | GCGC | 3 cut(s) | 160, 2487, 2710 |
| AspS9I | GGNCC | 5 cut(s) | 1425, 1452, 1668, 1737, 2697 |
| AsuC2I | CCSGG | 8 cut(s) | 1338, 1477, 1478, 1558, 2010, 2685, 2686, 2701 |
| AsuHPI | GGTGA | 8 cut(s) | 595, 721, 1241, 1887, 2895, 2961, 3244, 3289 |
| AsuII | TTCGAA | 2 cut(s) | 1292, 2964 |
| AvaI | CYCGRG | 2 cut(s) | 1476, 2684 |
| AvaII | GGWCC | 3 cut(s) | 1668, 1737, 2697 |
| BaeGI | GKGCMC | 1 cut(s) | 938 |
| BalI | TGGCCA | 1 cut(s) | 1748 |
| BamHI | GGATCC | 1 cut(s) | 806 |
| BanI | GGYRCC | 1 cut(s) | 2484 |
| BanII | GRGCYC | 2 cut(s) | 432, 1524 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1964, 1996 |
| BauI | CACGAG | 1 cut(s) | 767 |
| BbvI | GCAGC | 6 cut(s) | 189, 1713, 2203, 3044, 3162, 3328 |
| BceAI | ACGGC | 8 cut(s) | 1151, 1439, 1714, 2179, 2250, 2274, 2498, 3135 |
| BciT130I | CCWGG | 3 cut(s) | 804, 932, 1809 |
| BcnI | CCSGG | 8 cut(s) | 1338, 1477, 1478, 1558, 2010, 2685, 2686, 2701 |
| BcoDI | GTCTC | 5 cut(s) | 181, 994, 1552, 1623, 2364 |
| BfaI | CTAG | 6 cut(s) | 896, 1040, 1325, 2111, 2855, 3024 |
| BfoI | RGCGCY | 2 cut(s) | 161, 2488 |
| BfuAI | ACCTGC | 3 cut(s) | 1731, 2294, 3159 |
| BglII | AGATCT | 1 cut(s) | 743 |
| Bme18I | GGWCC | 3 cut(s) | 1668, 1737, 2697 |
| BmeT110I | CYCGRG | 2 cut(s) | 1476, 2684 |
| BmgT120I | GGNCC | 5 cut(s) | 1425, 1452, 1668, 1737, 2697 |
| BmiI | GGNNCC | 9 cut(s) | 324, 429, 808, 1078, 1523, 1738, 2273, 2486, 3252 |
| BmsI | GCATC | 9 cut(s) | 649, 658, 959, 1684, 1812, 1866, 1932, 2794, 2867 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2102 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 629, 661, 2385, 2417 |
| BpmI | CTGGAG | 1 cut(s) | 3225 |
| Bpu14I | TTCGAA | 2 cut(s) | 1292, 2964 |
| BpuEI | CTTGAG | 1 cut(s) | 1253 |
| BpuMI | CCSGG | 8 cut(s) | 1338, 1477, 1478, 1558, 2010, 2685, 2686, 2701 |
| BsaAI | YACGTR | 2 cut(s) | 1568, 2746 |
| BsaBI | GATNNNNATC | 1 cut(s) | 296 |
| BsaHI | GRCGYC | 2 cut(s) | 1813, 2485 |
| BsaI | GGTCTC | 2 cut(s) | 181, 1552 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1814, 1844, 3216, 3246 |
| Bse1I | ACTGG | 1 cut(s) | 2885 |
| Bse3DI | GCAATG | 1 cut(s) | 636 |
| Bse8I | GATNNNNATC | 1 cut(s) | 296 |
| BseBI | CCWGG | 3 cut(s) | 804, 932, 1809 |
| BseJI | GATNNNNATC | 1 cut(s) | 296 |
| BseMI | GCAATG | 1 cut(s) | 636 |
| BseMII | CTCAG | 1 cut(s) | 1711 |
| BseNI | ACTGG | 1 cut(s) | 2885 |
| BseRI | GAGGAG | 2 cut(s) | 1003, 1853 |
| BseSI | GKGCMC | 1 cut(s) | 938 |
| BseXI | GCAGC | 6 cut(s) | 189, 1713, 2203, 3044, 3162, 3328 |
| BseYI | CCCAGC | 2 cut(s) | 1516, 2475 |
| BsgI | GTGCAG | 2 cut(s) | 3043, 3187 |
| Bsh1236I | CGCG | 1 cut(s) | 2822 |
| Bsh1285I | CGRYCG | 1 cut(s) | 693 |
| BshFI | GGCC | 8 cut(s) | 463, 696, 1109, 1427, 1454, 1692, 1748, 2295 |
| BshNI | GGYRCC | 1 cut(s) | 2484 |
| BsiEI | CGRYCG | 1 cut(s) | 693 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1476, 2684 |
| BsiSI | CCGG | 8 cut(s) | 181, 1337, 1428, 1477, 1558, 2009, 2685, 2700 |
| BslFI | GGGAC | 1 cut(s) | 429 |
| BsmAI | GTCTC | 5 cut(s) | 181, 994, 1552, 1623, 2364 |
| BsmBI | CGTCTC | 2 cut(s) | 994, 2364 |
| BsmFI | GGGAC | 1 cut(s) | 429 |
| BsmI | GAATGC | 3 cut(s) | 1578, 2213, 3309 |
| BsnI | GGCC | 8 cut(s) | 463, 696, 1109, 1427, 1454, 1692, 1748, 2295 |
| Bso31I | GGTCTC | 2 cut(s) | 181, 1552 |
| BsoBI | CYCGRG | 2 cut(s) | 1476, 2684 |
| Bsp119I | TTCGAA | 2 cut(s) | 1292, 2964 |
| Bsp1286I | GDGCHC | 3 cut(s) | 432, 938, 1524 |
| Bsp143I | GATC | 8 cut(s) | 297, 690, 743, 806, 1340, 1789, 2150, 2775 |
| Bsp19I | CCATGG | 1 cut(s) | 2157 |
| BspANI | GGCC | 8 cut(s) | 463, 696, 1109, 1427, 1454, 1692, 1748, 2295 |
| BspCNI | CTCAG | 1 cut(s) | 1710 |
| BspFNI | CGCG | 1 cut(s) | 2822 |
| BspHI | TCATGA | 3 cut(s) | 1716, 2788, 2910 |
| BspLI | GGNNCC | 9 cut(s) | 324, 429, 808, 1078, 1523, 1738, 2273, 2486, 3252 |
| BspMI | ACCTGC | 3 cut(s) | 1731, 2294, 3159 |
| BspPI | GGATC | 5 cut(s) | 292, 801, 814, 1348, 2158 |
| BspT104I | TTCGAA | 2 cut(s) | 1292, 2964 |
| BspT107I | GGYRCC | 1 cut(s) | 2484 |
| BspTNI | GGTCTC | 2 cut(s) | 181, 1552 |
| BsrDI | GCAATG | 1 cut(s) | 636 |
| BsrI | ACTGG | 1 cut(s) | 2885 |
| BssMI | GATC | 8 cut(s) | 297, 690, 743, 806, 1340, 1789, 2150, 2775 |
| BssNAI | GTATAC | 1 cut(s) | 247 |
| BssNI | GRCGYC | 2 cut(s) | 1813, 2485 |
| BssSI | CACGAG | 1 cut(s) | 767 |
| BssT1I | CCWWGG | 7 cut(s) | 732, 1638, 1798, 2157, 2185, 2241, 2449 |
| Bst1107I | GTATAC | 1 cut(s) | 247 |
| Bst2BI | CACGAG | 1 cut(s) | 767 |
| Bst2UI | CCWGG | 3 cut(s) | 804, 932, 1809 |
| Bst4CI | ACNGT | 7 cut(s) | 220, 244, 1764, 2005, 2095, 2224, 3064 |
| Bst6I | CTCTTC | 5 cut(s) | 1195, 1219, 1985, 2303, 2358 |
| BstACI | GRCGYC | 2 cut(s) | 1813, 2485 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 143 |
| BstBAI | YACGTR | 2 cut(s) | 1568, 2746 |
| BstBI | TTCGAA | 2 cut(s) | 1292, 2964 |
| BstC8I | GCNNGC | 3 cut(s) | 647, 1179, 2948 |
| BstDEI | CTNAG | 5 cut(s) | 14, 662, 1411, 1697, 2561 |
| BstDSI | CCRYGG | 7 cut(s) | 240, 1167, 1730, 2157, 2195, 2266, 2290 |
| BstFNI | CGCG | 1 cut(s) | 2822 |
| BstH2I | RGCGCY | 2 cut(s) | 161, 2488 |
| BstHHI | GCGC | 3 cut(s) | 160, 2487, 2710 |
| BstKTI | GATC | 8 cut(s) | 300, 693, 746, 809, 1343, 1792, 2153, 2778 |
| BstMAI | GTCTC | 5 cut(s) | 181, 994, 1552, 1623, 2364 |
| BstMBI | GATC | 8 cut(s) | 297, 690, 743, 806, 1340, 1789, 2150, 2775 |
| BstMCI | CGRYCG | 1 cut(s) | 693 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 143, 646, 1776, 1785, 1836 |
| BstNI | CCWGG | 3 cut(s) | 804, 932, 1809 |
| BstNSI | RCATGY | 2 cut(s) | 754, 1636 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2102 |
| BstSLI | GKGCMC | 1 cut(s) | 938 |
| BstUI | CGCG | 1 cut(s) | 2822 |
| BstV1I | GCAGC | 6 cut(s) | 189, 1713, 2203, 3044, 3162, 3328 |
| BstX2I | RGATCY | 4 cut(s) | 743, 806, 1340, 2150 |
| BstYI | RGATCY | 4 cut(s) | 743, 806, 1340, 2150 |
| BstZ17I | GTATAC | 1 cut(s) | 247 |
| BsuRI | GGCC | 8 cut(s) | 463, 696, 1109, 1427, 1454, 1692, 1748, 2295 |
| BtgI | CCRYGG | 7 cut(s) | 240, 1167, 1730, 2157, 2195, 2266, 2290 |
| BtgZI | GCGATG | 1 cut(s) | 626 |
| BtsIMutI | CAGTG | 2 cut(s) | 2010, 2100 |
| BveI | ACCTGC | 3 cut(s) | 1731, 2294, 3159 |
| Cac8I | GCNNGC | 3 cut(s) | 647, 1179, 2948 |
| CciI | TCATGA | 3 cut(s) | 1716, 2788, 2910 |
| CfoI | GCGC | 3 cut(s) | 160, 2487, 2710 |
| Cfr13I | GGNCC | 5 cut(s) | 1425, 1452, 1668, 1737, 2697 |
| Cfr9I | CCCGGG | 2 cut(s) | 1476, 2684 |
| CseI | GACGC | 1 cut(s) | 1802 |
| Csp6I | GTAC | 2 cut(s) | 1972, 2220 |
| CviQI | GTAC | 2 cut(s) | 1972, 2220 |
| DdeI | CTNAG | 5 cut(s) | 14, 662, 1411, 1697, 2561 |
| DinI | GGCGCC | 1 cut(s) | 2486 |
| DpnI | GATC | 8 cut(s) | 299, 692, 745, 808, 1342, 1791, 2152, 2777 |
| DpnII | GATC | 8 cut(s) | 297, 690, 743, 806, 1340, 1789, 2150, 2775 |
| DraI | TTTAAA | 5 cut(s) | 358, 762, 916, 2601, 2994 |
| DraIII | CACNNNGTG | 1 cut(s) | 2217 |
| EaeI | YGGCCR | 5 cut(s) | 461, 694, 1107, 1690, 1746 |
| Eam1104I | CTCTTC | 5 cut(s) | 1195, 1219, 1985, 2303, 2358 |
| EarI | CTCTTC | 5 cut(s) | 1195, 1219, 1985, 2303, 2358 |
| EciI | GGCGGA | 1 cut(s) | 1585 |
| Eco130I | CCWWGG | 7 cut(s) | 732, 1638, 1798, 2157, 2185, 2241, 2449 |
| Eco24I | GRGCYC | 2 cut(s) | 432, 1524 |
| Eco31I | GGTCTC | 2 cut(s) | 181, 1552 |
| Eco47I | GGWCC | 3 cut(s) | 1668, 1737, 2697 |
| Eco47III | AGCGCT | 1 cut(s) | 159 |
| Eco88I | CYCGRG | 2 cut(s) | 1476, 2684 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1668, 1737 |
| EcoRI | GAATTC | 2 cut(s) | 2809, 2899 |
| EcoRII | CCWGG | 3 cut(s) | 802, 930, 1807 |
| EcoT14I | CCWWGG | 7 cut(s) | 732, 1638, 1798, 2157, 2185, 2241, 2449 |
| EcoT22I | ATGCAT | 2 cut(s) | 756, 2873 |
| EcoT38I | GRGCYC | 2 cut(s) | 432, 1524 |
| EgeI | GGCGCC | 1 cut(s) | 2486 |
| EheI | GGCGCC | 1 cut(s) | 2486 |
| ErhI | CCWWGG | 7 cut(s) | 732, 1638, 1798, 2157, 2185, 2241, 2449 |
| Esp3I | CGTCTC | 2 cut(s) | 994, 2364 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 144, 176 |
| FaqI | GGGAC | 1 cut(s) | 429 |
| FauI | CCCGC | 2 cut(s) | 1844, 3239 |
| FblI | GTMKAC | 1 cut(s) | 246 |
| FriOI | GRGCYC | 2 cut(s) | 432, 1524 |
| FspBI | CTAG | 6 cut(s) | 896, 1040, 1325, 2111, 2855, 3024 |
| GlaI | GCGC | 3 cut(s) | 159, 2486, 2709 |
| GsaI | CCCAGC | 2 cut(s) | 1520, 2479 |
| GsuI | CTGGAG | 1 cut(s) | 3225 |
| HaeII | RGCGCY | 2 cut(s) | 161, 2488 |
| HaeIII | GGCC | 8 cut(s) | 463, 696, 1109, 1427, 1454, 1692, 1748, 2295 |
| HapII | CCGG | 8 cut(s) | 181, 1337, 1428, 1477, 1558, 2009, 2685, 2700 |
| HgaI | GACGC | 1 cut(s) | 1802 |
| HhaI | GCGC | 3 cut(s) | 160, 2487, 2710 |
| Hin1I | GRCGYC | 2 cut(s) | 1813, 2485 |
| Hin6I | GCGC | 3 cut(s) | 158, 2485, 2708 |
| HinP1I | GCGC | 3 cut(s) | 158, 2485, 2708 |
| HincII | GTYRAC | 1 cut(s) | 2091 |
| HindII | GTYRAC | 1 cut(s) | 2091 |
| HindIII | AAGCTT | 1 cut(s) | 1137 |
| HpaII | CCGG | 8 cut(s) | 181, 1337, 1428, 1477, 1558, 2009, 2685, 2700 |
| HphI | GGTGA | 8 cut(s) | 595, 721, 1241, 1887, 2895, 2961, 3244, 3289 |
| Hpy166II | GTNNAC | 9 cut(s) | 247, 969, 1822, 1884, 2091, 2220, 2230, 2331, 2552 |
| Hpy188I | TCNGA | 7 cut(s) | 327, 983, 1628, 1875, 2315, 2393, 2424 |
| Hpy8I | GTNNAC | 9 cut(s) | 247, 969, 1822, 1884, 2091, 2220, 2230, 2331, 2552 |
| HpyAV | CCTTC | 9 cut(s) | 201, 406, 537, 1027, 1765, 1877, 1908, 2077, 3034 |
| HpyCH4III | ACNGT | 7 cut(s) | 220, 244, 1764, 2005, 2095, 2224, 3064 |
| HpyCH4IV | ACGT | 7 cut(s) | 170, 330, 495, 987, 1567, 2324, 2745 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 143, 646, 1776, 1785, 1836 |
| HpyF3I | CTNAG | 5 cut(s) | 14, 662, 1411, 1697, 2561 |
| HpySE526I | ACGT | 7 cut(s) | 170, 330, 495, 987, 1567, 2324, 2745 |
| Hsp92I | GRCGYC | 2 cut(s) | 1813, 2485 |
| HspAI | GCGC | 3 cut(s) | 158, 2485, 2708 |
| KasI | GGCGCC | 1 cut(s) | 2484 |
| Kzo9I | GATC | 8 cut(s) | 297, 690, 743, 806, 1340, 1789, 2150, 2775 |
| LmnI | GCTCC | 9 cut(s) | 349, 427, 637, 804, 1016, 1527, 1835, 2012, 3250 |
| Lsp1109I | GCAGC | 6 cut(s) | 189, 1713, 2203, 3044, 3162, 3328 |
| LweI | GCATC | 9 cut(s) | 649, 658, 959, 1684, 1812, 1866, 1932, 2794, 2867 |
| MaeI | CTAG | 6 cut(s) | 896, 1040, 1325, 2111, 2855, 3024 |
| MaeII | ACGT | 7 cut(s) | 170, 330, 495, 987, 1567, 2324, 2745 |
| MaeIII | GTNAC | 6 cut(s) | 26, 337, 824, 1999, 2095, 3115 |
| MalI | GATC | 8 cut(s) | 299, 692, 745, 808, 1342, 1791, 2152, 2777 |
| MboI | GATC | 8 cut(s) | 297, 690, 743, 806, 1340, 1789, 2150, 2775 |
| MfeI | CAATTG | 4 cut(s) | 81, 698, 777, 2894 |
| MflI | RGATCY | 4 cut(s) | 743, 806, 1340, 2150 |
| MhlI | GDGCHC | 3 cut(s) | 432, 938, 1524 |
| MlsI | TGGCCA | 1 cut(s) | 1748 |
| MluNI | TGGCCA | 1 cut(s) | 1748 |
| Mly113I | GGCGCC | 1 cut(s) | 2485 |
| MlyI | GAGTC | 5 cut(s) | 585, 1136, 2112, 2434, 2522 |
| MmeI | TCCRAC | 3 cut(s) | 1552, 1933, 2944 |
| Mox20I | TGGCCA | 1 cut(s) | 1748 |
| Mph1103I | ATGCAT | 2 cut(s) | 756, 2873 |
| MscI | TGGCCA | 1 cut(s) | 1748 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2235, 2866, 2955 |
| Msp20I | TGGCCA | 1 cut(s) | 1748 |
| MspI | CCGG | 8 cut(s) | 181, 1337, 1428, 1477, 1558, 2009, 2685, 2700 |
| MunI | CAATTG | 4 cut(s) | 81, 698, 777, 2894 |
| Mva1269I | GAATGC | 3 cut(s) | 1578, 2213, 3309 |
| MvaI | CCWGG | 3 cut(s) | 804, 932, 1809 |
| MvnI | CGCG | 1 cut(s) | 2822 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 143, 646, 1776, 1785, 1836 |
| NarI | GGCGCC | 1 cut(s) | 2485 |
| NciI | CCSGG | 8 cut(s) | 1338, 1477, 1478, 1558, 2010, 2685, 2686, 2701 |
| NcoI | CCATGG | 1 cut(s) | 2157 |
| NdeII | GATC | 8 cut(s) | 297, 690, 743, 806, 1340, 1789, 2150, 2775 |
| NlaIV | GGNNCC | 9 cut(s) | 324, 429, 808, 1078, 1523, 1738, 2273, 2486, 3252 |
| NmeAIII | GCCGAG | 2 cut(s) | 1343, 1668 |
| NmuCI | GTSAC | 3 cut(s) | 1999, 2095, 3115 |
| NsiI | ATGCAT | 2 cut(s) | 756, 2873 |
| NspI | RCATGY | 2 cut(s) | 754, 1636 |
| NspV | TTCGAA | 2 cut(s) | 1292, 2964 |
| PagI | TCATGA | 3 cut(s) | 1716, 2788, 2910 |
| PaqCI | CACCTGC | 2 cut(s) | 2294, 3159 |
| PasI | CCCWGGG | 1 cut(s) | 1808 |
| PciI | ACATGT | 1 cut(s) | 1632 |
| PctI | GAATGC | 3 cut(s) | 1578, 2213, 3309 |
| PfeI | GAWTC | 7 cut(s) | 110, 520, 565, 1912, 2316, 2407, 2966 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2035, 2242 |
| PfoI | TCCNGGA | 1 cut(s) | 1336 |
| Ple19I | CGATCG | 1 cut(s) | 693 |
| PleI | GAGTC | 5 cut(s) | 584, 1135, 2111, 2433, 2522 |
| PluTI | GGCGCC | 1 cut(s) | 2488 |
| PpsI | GAGTC | 5 cut(s) | 584, 1135, 2111, 2433, 2522 |
| Ppu21I | YACGTR | 2 cut(s) | 1568, 2746 |
| PpuMI | RGGWCCY | 2 cut(s) | 1668, 1737 |
| PscI | ACATGT | 1 cut(s) | 1632 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2102 |
| PsiI | TTATAA | 1 cut(s) | 2832 |
| Psp5II | RGGWCCY | 2 cut(s) | 1668, 1737 |
| Psp6I | CCWGG | 3 cut(s) | 802, 930, 1807 |
| PspFI | CCCAGC | 2 cut(s) | 1516, 2475 |
| PspGI | CCWGG | 3 cut(s) | 802, 930, 1807 |
| PspN4I | GGNNCC | 9 cut(s) | 324, 429, 808, 1078, 1523, 1738, 2273, 2486, 3252 |
| PspPI | GGNCC | 5 cut(s) | 1425, 1452, 1668, 1737, 2697 |
| PspPPI | RGGWCCY | 2 cut(s) | 1668, 1737 |
| PsuI | RGATCY | 4 cut(s) | 743, 806, 1340, 2150 |
| PvuI | CGATCG | 1 cut(s) | 693 |
| RsaI | GTAC | 2 cut(s) | 1973, 2221 |
| RsaNI | GTAC | 2 cut(s) | 1972, 2220 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2235, 2866, 2955 |
| Sau3AI | GATC | 8 cut(s) | 297, 690, 743, 806, 1340, 1789, 2150, 2775 |
| Sau96I | GGNCC | 5 cut(s) | 1425, 1452, 1668, 1737, 2697 |
| SchI | GAGTC | 5 cut(s) | 585, 1136, 2112, 2434, 2522 |
| SduI | GDGCHC | 3 cut(s) | 432, 938, 1524 |
| SfaNI | GCATC | 9 cut(s) | 649, 658, 959, 1684, 1812, 1866, 1932, 2794, 2867 |
| SfoI | GGCGCC | 1 cut(s) | 2486 |
| SfuI | TTCGAA | 2 cut(s) | 1292, 2964 |
| SinI | GGWCC | 3 cut(s) | 1668, 1737, 2697 |
| SmaI | CCCGGG | 2 cut(s) | 1478, 2686 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2235, 2866, 2955 |
| SmlI | CTYRAG | 1 cut(s) | 1268 |
| SmoI | CTYRAG | 1 cut(s) | 1268 |
| SspDI | GGCGCC | 1 cut(s) | 2484 |
| SspI | AATATT | 2 cut(s) | 1848, 3283 |
| SspMI | CTAG | 6 cut(s) | 896, 1040, 1325, 2111, 2855, 3024 |
| StyI | CCWWGG | 7 cut(s) | 732, 1638, 1798, 2157, 2185, 2241, 2449 |
| TaaI | ACNGT | 7 cut(s) | 220, 244, 1764, 2005, 2095, 2224, 3064 |
| TaiI | ACGT | 7 cut(s) | 173, 333, 498, 990, 1570, 2327, 2748 |
| TaqI | TCGA | 5 cut(s) | 1292, 1345, 1605, 2660, 2964 |
| TauI | GCSGC | 4 cut(s) | 3086, 3181, 3216, 3347 |
| TfiI | GAWTC | 7 cut(s) | 110, 520, 565, 1912, 2316, 2407, 2966 |
| TscAI | CASTG | 2 cut(s) | 2010, 2100 |
| TseFI | GTSAC | 3 cut(s) | 1999, 2095, 3115 |
| TseI | GCWGC | 6 cut(s) | 177, 1726, 2191, 3057, 3175, 3341 |
| Tsp45I | GTSAC | 3 cut(s) | 1999, 2095, 3115 |
| TspGWI | ACGGA | 5 cut(s) | 352, 1190, 2076, 2166, 2346 |
| TspMI | CCCGGG | 2 cut(s) | 1476, 2684 |
| TspRI | CASTG | 2 cut(s) | 2010, 2100 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2035, 2242 |
| VpaK11BI | GGWCC | 3 cut(s) | 1668, 1737, 2697 |
| XceI | RCATGY | 2 cut(s) | 754, 1636 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1165, 1536 |
| XmaI | CCCGGG | 2 cut(s) | 1476, 2684 |
| XmiI | GTMKAC | 1 cut(s) | 246 |
| XspI | CTAG | 6 cut(s) | 896, 1040, 1325, 2111, 2855, 3024 |
| Zsp2I | ATGCAT | 2 cut(s) | 756, 2873 |