RCHIOBHM_CHR0C04G0497971

No description available

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0001044
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 333 bp
ATGTTTGCACAAACAGATTGGAATTCTCGTACATGCTTGTTAGCATCCTCCATATTAAGTCCATGGAAGATAGGGAGCTTGTGCAACAATCCACTCTTAAGCTCAAACTCTGCTTGTCTTCCAGCTGCAGGGGCAGGGTATACTATGCCTGTAGGGGGTCCTCCTTCAACAGTTGCGGTGGAGAGTTCCCTAATAGATGCCATTCTCTCTTCTTCGACTTCTTCAGGTGGTGGTGAAGGTGGTGGTGTAGAGTTGGACGAAATCACAGGTGAAGGTGAACGTGAAGGAGGAGATGGACTTGGTGTAGGTGATGTAGACTCCTCAGAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

10.91

Weight (kDa)

4.05

Isoelectric Point (pI)

58.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 140, 315
AciI CCGC 1 cut(s) 176
AcsI RAATTY 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 2 cut(s) 128, 155
AflII CTTAAG 1 cut(s) 97
AgsI TTSAA 1 cut(s) 168
AluBI AGCT 3 cut(s) 78, 102, 125
AluI AGCT 3 cut(s) 78, 102, 125
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 4 cut(s) 245, 281, 287, 320
AvaII GGWCC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 287
BfmI CTRYAG 2 cut(s) 126, 150
BfrI CTTAAG 1 cut(s) 97
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 159
BmsI GCATC 2 cut(s) 53, 187
BpiI GAAGAC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 62
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 155
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 44
BseLI CCNNNNNNNGG 2 cut(s) 128, 155
BseRI GAGGAG 2 cut(s) 303, 310
BseXI GCAGC 1 cut(s) 112
BslI CCNNNNNNNGG 2 cut(s) 128, 155
Bsp19I CCATGG 1 cut(s) 62
BspACI CCGC 1 cut(s) 176
BspLI GGNNCC 1 cut(s) 159
BspMAI CTGCAG 1 cut(s) 130
BspTI CTTAAG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 62
BssNAI GTATAC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 62
Bst1107I GTATAC 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 172, 330
Bst6I CTCTTC 1 cut(s) 214
BstAFI CTTAAG 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 322
BstDSI CCRYGG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 36
BstSFI CTRYAG 2 cut(s) 126, 150
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 110
BstZ17I GTATAC 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 62
BtsCI GGATG 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 30
CviAII CATG 2 cut(s) 33, 63
CviJI RGCY 3 cut(s) 78, 102, 125
CviKI_1 RGCY 3 cut(s) 78, 102, 125
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 62
FaeI CATG 2 cut(s) 36, 66
FaiI YATR 5 cut(s) 34, 53, 64, 141, 146
FatI CATG 2 cut(s) 32, 62
FblI GTMKAC 2 cut(s) 140, 315
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
Hin1II CATG 2 cut(s) 36, 66
HinfI GANTC 1 cut(s) 317
HphI GGTGA 4 cut(s) 245, 281, 287, 320
Hpy166II GTNNAC 3 cut(s) 141, 278, 316
Hpy188I TCNGA 1 cut(s) 325
Hpy8I GTNNAC 3 cut(s) 141, 278, 316
HpyAV CCTTC 4 cut(s) 174, 230, 266, 278
HpyCH4III ACNGT 2 cut(s) 172, 330
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 3 cut(s) 8, 84, 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 322
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 2 cut(s) 36, 66
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 6 cut(s) 114, 120, 135, 162, 210, 252
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 2 cut(s) 53, 187
MaeII ACGT 1 cut(s) 280
MboII GAAGA 5 cut(s) 79, 110, 201, 204, 213
MluCI AATT 1 cut(s) 22
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 4 cut(s) 58, 171, 281, 331
MseI TTAA 2 cut(s) 56, 98
MspA1I CMGCKG 1 cut(s) 125
MspCI CTTAAG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 131
NcoI CCATGG 1 cut(s) 62
NlaIII CATG 2 cut(s) 36, 66
NlaIV GGNNCC 1 cut(s) 159
NspI RCATGY 1 cut(s) 36
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PpuMI RGGWCCY 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 158
PspPPI RGGWCCY 1 cut(s) 158
PstI CTGCAG 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 125
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 56, 98
SatI GCNGC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 1 cut(s) 311
SetI ASST 9 cut(s) 80, 104, 127, 229, 241, 271, 277, 283, 310
SfaNI GCATC 2 cut(s) 53, 187
SfcI CTRYAG 2 cut(s) 126, 150
SinI GGWCC 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
Sse9I AATT 1 cut(s) 22
SsiI CCGC 1 cut(s) 176
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 2 cut(s) 172, 330
TaiI ACGT 1 cut(s) 283
TaqI TCGA 1 cut(s) 215
TasI AATT 1 cut(s) 22
Tru1I TTAA 2 cut(s) 56, 98
Tru9I TTAA 2 cut(s) 56, 98
TseI GCWGC 1 cut(s) 125
Vha464I CTTAAG 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 1 cut(s) 22
XceI RCATGY 1 cut(s) 36
XmiI GTMKAC 2 cut(s) 140, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.