pycom01g03730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0001044
Physical Location & Seq
Forward (+)
2812237 .. 2813307
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g03730.1

Sequence Viewer

Length: 873 bp
ATGGCATCTAAAAGAGGTAAGTTCACTTGGACTTTTCGGAAAGTATCCAAGATTTCCTTATCAGTTTGCTCTTTCTTAGACTTCATAACAGAATCTTTTTTGTTCAATTCTGTATCTTTAGGAGACTTTTCATTTTTTGTTGAAGCTTCATCTTGCTCAAGATTTTTGGTTTGTTGCTCCTCTTGCTCATTTTGTATCTTTTCTAGTCCTCTTTTTCACAACATTCATCTGCTCCGCATTTGGATTCACCACGGTTTGGCTAGGCAACCTTCCTGGTTGATGTTGCCCCATCAAACTTGCGAACTGACTCATTTGACGCTCAAGCTAAAGAAGCAATTAAATCCTCAAGAGACTTACTTGGAGCTTGTTGTTGTTGAGGCTGAAATGGTGCCTGCAGTCTTGCTTGAAATAAGCCAGGTGGACGGTTATAGTTGTTGGGAACTGATTGTTGTCCGTTGTTTTGATTGTTTCACTTTAAGTGTGGATGATCGCGCAACCCGGCGTTATAGTTGTTGGAGTATGGATCATACTTTTGTCTTTACCACCTTCTGTTTTCTGGTGGATCGATCCATCAATGAAGAGCACATGTCTGTGGCATGTCCCATCATTGAACATACACCGCACACCTGTTTTGGAGCCACCATAACCTATTGCACAAGATTAGTCAAGTTAGCTAATTGTAATTCAATACTAGAGTTAGCACTTACCTCGTTAACTTTCTTAAGAGGTAGCTCATCTCTCCCTCCAAATTGTCGTGTGTTGCCAGCAATGTTCTTTAATAATGCCTTAGCATTTGTTGGTGTCTTGTCCATGAATGCTCATCCACTTGCTGCATCAAGCATTACACGATCAGTACCACACAATCCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

32.75

Weight (kDa)

7.52

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 388
AccB7I CCANNNNNTGG 1 cut(s) 256
AccII CGCG 1 cut(s) 492
AciI CCGC 2 cut(s) 235, 620
AclWI GGATC 3 cut(s) 531, 561, 570
AfaI GTAC 1 cut(s) 855
AfiI CCNNNNNNNGG 1 cut(s) 256
AflII CTTAAG 1 cut(s) 721
AflIII ACRYGT 1 cut(s) 585
AgsI TTSAA 5 cut(s) 106, 143, 407, 611, 687
AjnI CCWGG 2 cut(s) 272, 414
AluBI AGCT 5 cut(s) 146, 325, 364, 674, 732
AluI AGCT 5 cut(s) 146, 325, 364, 674, 732
Alw21I GWGCWC 1 cut(s) 585
Alw26I GTCTC 2 cut(s) 117, 344
AlwI GGATC 3 cut(s) 531, 561, 570
ApeKI GCWGC 1 cut(s) 830
AspLEI GCGC 1 cut(s) 494
AsuC2I CCSGG 1 cut(s) 499
AsuHPI GGTGA 1 cut(s) 239
BanI GGYRCC 1 cut(s) 388
Bbv12I GWGCWC 1 cut(s) 585
BbvI GCAGC 1 cut(s) 817
BccI CCATC 3 cut(s) 297, 578, 611
BcgI CGANNNNNNTGC 2 cut(s) 690, 724
BciT130I CCWGG 2 cut(s) 274, 416
BciVI GTATCC 1 cut(s) 55
BcnI CCSGG 1 cut(s) 499
BcoDI GTCTC 2 cut(s) 117, 344
BfaI CTAG 3 cut(s) 204, 261, 692
BfmI CTRYAG 1 cut(s) 393
BfrI CTTAAG 1 cut(s) 721
BfuI GTATCC 1 cut(s) 55
BisI GCNGC 1 cut(s) 831
BlsI GCNGC 1 cut(s) 832
Bme1390I CCNGG 3 cut(s) 274, 416, 499
BmiI GGNNCC 2 cut(s) 390, 637
BmrFI CCNGG 3 cut(s) 274, 416, 499
BmsI GCATC 2 cut(s) 14, 842
Bpu10I CCTNAGC 1 cut(s) 787
BpuEI CTTGAG 3 cut(s) 142, 305, 330
BpuMI CCSGG 1 cut(s) 499
Bsa29I ATCGAT 1 cut(s) 565
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 774
BseBI CCWGG 2 cut(s) 274, 416
BseCI ATCGAT 1 cut(s) 565
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 2 cut(s) 490, 820
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 774
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 817
Bsh1236I CGCG 1 cut(s) 492
BshNI GGYRCC 1 cut(s) 388
BshVI ATCGAT 1 cut(s) 565
BsiHKAI GWGCWC 1 cut(s) 585
BsiSI CCGG 1 cut(s) 499
BslFI GGGAC 1 cut(s) 585
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 2 cut(s) 117, 344
BsmFI GGGAC 1 cut(s) 585
BsmI GAATGC 1 cut(s) 820
Bsp1286I GDGCHC 1 cut(s) 585
Bsp143I GATC 5 cut(s) 487, 523, 562, 566, 848
BspACI CCGC 2 cut(s) 235, 620
BspDI ATCGAT 1 cut(s) 565
BspFNI CGCG 1 cut(s) 492
BspLI GGNNCC 2 cut(s) 390, 637
BspMAI CTGCAG 1 cut(s) 397
BspPI GGATC 3 cut(s) 531, 561, 570
BspQI GCTCTTC 1 cut(s) 573
BspT107I GGYRCC 1 cut(s) 388
BspTI CTTAAG 1 cut(s) 721
BsrDI GCAATG 1 cut(s) 774
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 5 cut(s) 487, 523, 562, 566, 848
Bst2UI CCWGG 2 cut(s) 274, 416
Bst4CI ACNGT 2 cut(s) 254, 425
Bst6I CTCTTC 1 cut(s) 573
BstAFI CTTAAG 1 cut(s) 721
BstC8I GCNNGC 2 cut(s) 393, 765
BstDEI CTNAG 2 cut(s) 76, 787
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 2 cut(s) 490, 820
BstFNI CGCG 1 cut(s) 492
BstHHI GCGC 1 cut(s) 494
BstKTI GATC 5 cut(s) 490, 526, 565, 569, 851
BstMAI GTCTC 2 cut(s) 117, 344
BstMBI GATC 5 cut(s) 487, 523, 562, 566, 848
BstMWI GCNNNNNNNGC 2 cut(s) 183, 331
BstNI CCWGG 2 cut(s) 274, 416
BstNSI RCATGY 2 cut(s) 589, 600
BstSCI CCNGG 3 cut(s) 272, 414, 497
BstSFI CTRYAG 1 cut(s) 393
BstUI CGCG 1 cut(s) 492
BstV1I GCAGC 1 cut(s) 817
Bsu15I ATCGAT 1 cut(s) 565
BsuI GTATCC 1 cut(s) 55
BsuTUI ATCGAT 1 cut(s) 565
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 2 cut(s) 490, 820
Cac8I GCNNGC 2 cut(s) 393, 765
CfoI GCGC 1 cut(s) 494
ClaI ATCGAT 1 cut(s) 565
CseI GACGC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 854
CviAII CATG 3 cut(s) 586, 597, 811
CviJI RGCY 9 cut(s) 146, 260, 325, 364, 380, 414, 638, 674, 732
CviKI_1 RGCY 9 cut(s) 146, 260, 325, 364, 380, 414, 638, 674, 732
CviQI GTAC 1 cut(s) 854
DdeI CTNAG 2 cut(s) 76, 787
DpnI GATC 5 cut(s) 489, 525, 564, 568, 850
DpnII GATC 5 cut(s) 487, 523, 562, 566, 848
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
EcoRII CCWGG 2 cut(s) 272, 414
FaeI CATG 3 cut(s) 589, 600, 814
FalI AAGNNNNNCTT 2 cut(s) 41, 73
FaqI GGGAC 1 cut(s) 585
FatI CATG 3 cut(s) 585, 596, 810
Fnu4HI GCNGC 1 cut(s) 831
FokI GGATG 2 cut(s) 497, 807
Fsp4HI GCNGC 1 cut(s) 831
FspBI CTAG 3 cut(s) 204, 261, 692
GlaI GCGC 1 cut(s) 493
GluI GCNGC 1 cut(s) 831
HapII CCGG 1 cut(s) 499
HgaI GACGC 1 cut(s) 325
HhaI GCGC 1 cut(s) 494
Hin1II CATG 3 cut(s) 589, 600, 814
Hin6I GCGC 1 cut(s) 492
HinP1I GCGC 1 cut(s) 492
HincII GTYRAC 1 cut(s) 714
HindII GTYRAC 1 cut(s) 714
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 3 cut(s) 92, 244, 307
HpaI GTTAAC 1 cut(s) 714
HpaII CCGG 1 cut(s) 499
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 3 cut(s) 24, 421, 714
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 2 cut(s) 159, 347
Hpy8I GTNNAC 3 cut(s) 24, 421, 714
HpyAV CCTTC 2 cut(s) 279, 556
HpyCH4III ACNGT 2 cut(s) 254, 425
HpyCH4V TGCA 3 cut(s) 395, 654, 833
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 331
HpyF3I CTNAG 2 cut(s) 76, 787
Hsp92II CATG 3 cut(s) 589, 600, 814
HspAI GCGC 1 cut(s) 492
KspAI GTTAAC 1 cut(s) 714
Kzo9I GATC 5 cut(s) 487, 523, 562, 566, 848
LguI GCTCTTC 1 cut(s) 573
LmnI GCTCC 4 cut(s) 182, 237, 361, 635
LpnPI CCDG 9 cut(s) 259, 286, 401, 405, 428, 512, 542, 640, 777
Lsp1109I GCAGC 1 cut(s) 817
LweI GCATC 2 cut(s) 14, 842
MaeI CTAG 3 cut(s) 204, 261, 692
MalI GATC 5 cut(s) 489, 525, 564, 568, 850
MboI GATC 5 cut(s) 487, 523, 562, 566, 848
MboII GAAGA 1 cut(s) 590
MhlI GDGCHC 1 cut(s) 585
MluCI AATT 5 cut(s) 106, 335, 676, 682, 748
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 494
MnlI CCTC 8 cut(s) 8, 190, 219, 354, 370, 718, 719, 753
MseI TTAA 5 cut(s) 338, 476, 713, 722, 777
MslI CAYNNNNRTG 1 cut(s) 590
MspCI CTTAAG 1 cut(s) 721
MspI CCGG 1 cut(s) 499
MspR9I CCNGG 3 cut(s) 274, 416, 499
Mva1269I GAATGC 1 cut(s) 820
MvaI CCWGG 2 cut(s) 274, 416
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 2 cut(s) 183, 331
NciI CCSGG 1 cut(s) 499
NdeII GATC 5 cut(s) 487, 523, 562, 566, 848
NlaIII CATG 3 cut(s) 589, 600, 814
NlaIV GGNNCC 2 cut(s) 390, 637
NspI RCATGY 2 cut(s) 589, 600
PciI ACATGT 1 cut(s) 585
PciSI GCTCTTC 1 cut(s) 573
PctI GAATGC 1 cut(s) 820
PfeI GAWTC 2 cut(s) 92, 244
PflMI CCANNNNNTGG 1 cut(s) 256
PkrI GCNGC 1 cut(s) 832
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PscI ACATGT 1 cut(s) 585
Psp6I CCWGG 2 cut(s) 272, 414
PspGI CCWGG 2 cut(s) 272, 414
PspN4I GGNNCC 2 cut(s) 390, 637
PstI CTGCAG 1 cut(s) 397
RsaI GTAC 1 cut(s) 855
RsaNI GTAC 1 cut(s) 854
RseI CAYNNNNRTG 1 cut(s) 590
SapI GCTCTTC 1 cut(s) 573
SaqAI TTAA 5 cut(s) 338, 476, 713, 722, 777
SatI GCNGC 1 cut(s) 831
Sau3AI GATC 5 cut(s) 487, 523, 562, 566, 848
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 3 cut(s) 274, 416, 499
SduI GDGCHC 1 cut(s) 585
SfaNI GCATC 2 cut(s) 14, 842
SfcI CTRYAG 1 cut(s) 393
SmiMI CAYNNNNRTG 1 cut(s) 590
SmlI CTYRAG 4 cut(s) 157, 320, 345, 721
SmoI CTYRAG 4 cut(s) 157, 320, 345, 721
Sse9I AATT 5 cut(s) 106, 335, 676, 682, 748
SsiI CCGC 2 cut(s) 235, 620
SspMI CTAG 3 cut(s) 204, 261, 692
StyD4I CCNGG 3 cut(s) 272, 414, 497
TaaI ACNGT 2 cut(s) 254, 425
TaqI TCGA 1 cut(s) 565
TasI AATT 5 cut(s) 106, 335, 676, 682, 748
TfiI GAWTC 2 cut(s) 92, 244
Tru1I TTAA 5 cut(s) 338, 476, 713, 722, 777
Tru9I TTAA 5 cut(s) 338, 476, 713, 722, 777
TseI GCWGC 1 cut(s) 830
TspDTI ATGAA 7 cut(s) 73, 120, 138, 215, 591, 827, 858
TspGWI ACGGA 1 cut(s) 443
Van91I CCANNNNNTGG 1 cut(s) 256
Vha464I CTTAAG 1 cut(s) 721
XceI RCATGY 2 cut(s) 589, 600
XspI CTAG 3 cut(s) 204, 261, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.