pycom17g16660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001044
Physical Location & Seq
Forward (+)
14713786 .. 14716189
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g16660.1

Sequence Viewer

Length: 1653 bp
ATGCTAGGATATAAGGGAATTTCACCTAATCGTTATGAAGTTATATTCTTGAGTAGTAAAGATCGCGTATTCCATAGTTATGAATGCCTAGTCGATGTTTATGATTTCCTAGGAATGCTTTGGATTGTTGTATGCGCTAACCCATCCAATCCAATGAATCTAGGGAAATCTGAAATCAAATTATATGCTTATGTTCATGTGTGGATAAGGAACCCTCTAACTAGTTTTTCATCATTTTATTTCAGTAATTTCGTTTTTACAATCTGTTTGTTTCCAAGTTTCTGTTTTTATTTCAAACATTTAGTTTGTGTTTGTAAGTGTTTTGATTCATTTTGTTTCCCAAATTCGTCCAAAGTACTCAAGTGTTTTGGTGCTGTTTTGAGTCTTTTGGTTTGTTTTAGTGTTTTAAAGTTTAGTTTTGCAATATTTGAGTCTAGTATAGTGTTTCATATTGTTATTTTACCCCCGGTCCAGAACGATCCCTACTTGCACCTATACTACAATTTGACGAAAAGAGGGTTTAATTTGTGTGCGTATAAATCTCGCATCACCTCTCTAACCGAAGTAGGAGAGGGTAAAGATGATATGACCCAAAACTATGCCTTGTTAGTTTCCATGCATCTTTTCAAGATTAAAGTAAGGTTATGCAAGCAATCATCAAATGAGTCCCCAAAAACACTAAAATCACTTACCATGCATCGTTGGAAAGTGGCCGGTGCATTGCATAAACCAAATGGCATACGACGATATGCAAAAGTACCAAATGGACAAGTAAAGTATATCCCGAATAACCATCAAGAAAGCAATAAAAAGAATGACCGGCTAACCTTTCAACTTCCTATAGTCAATGCACACCCTCCAACCGGTTTGAATGCGTGTAGGCACAAGTTCATCTTCTTCATTTTTCACCACCGTGACTCCGGACTTCTTCGGAACCACTTGGACCGGTGGAACCCAACAACTATCCGAGATGGGATAGATGACGCCACAATCAAGCAATTTGATGATTTCCTTCTTCACTACTTCCATCATTGGTGGGTTGAGTCGACAATTCGATGCATGCACGTGGTAGGACTTATACCCTTGATGTCGGCCAAAGTCCACCCTATGGCCGTCTTGTGCTCTTTGAGAACCCTCACCAACTTCTCCTCCTCTTGTGCCGTGAGTGATGAAGCAATAATGATGGGCAATGTGTCTTGCTCGTCAAGTGTAGGTGGTTGTTCTATAGAAGGAAGCAACTTATTAGTCGAAATTGGAATTGAATTTGGACTAGGGGGCTTACCTTGGAGCCGTGGCAATGACTCTAGGGCTGCCACGGTCTCAATTACATCTTCATCAAAGGCCACGACATGGGTGTTCAATTGTGTGCCGTGGGTTGCTATGGACCGTTTCAAGCCCATCGCCATGCAATTGATCAAGTTGTGCCTGCCATCATTAGGAAATCTCATAGTTTCAGAAATATTAAAATCAATCACTTCCCCATCGAATTCCATTGTTAAAGTGCCTTTAAACACATCTATCTTAGTTCGATGGAGCATGGGTGGTTTCCTCCATTTCAAGGACATAGAAATCCGCCGGGAAGATCAAATTGTTCACCTGCACCAAAACATCTTCCAAAACTCCCTTTGGATAGGCATTAGATCTATCGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

551

Amino Acids

62.47

Weight (kDa)

9.21

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1605
Acc36I ACCTGC 1 cut(s) 1605
AccB7I CCANNNNNTGG 2 cut(s) 1108, 1350
AccI GTMKAC 1 cut(s) 1046
AccII CGCG 1 cut(s) 66
AccIII TCCGGA 1 cut(s) 920
AciI CCGC 1 cut(s) 1573
AclWI GGATC 1 cut(s) 473
AcoI YGGCCR 3 cut(s) 711, 1092, 1110
AcsI RAATTY 4 cut(s) 18, 343, 1262, 1486
AcvI CACGTG 1 cut(s) 1066
AcyI GRCGYC 1 cut(s) 984
AfaI GTAC 2 cut(s) 357, 759
AfiI CCNNNNNNNGG 5 cut(s) 863, 1108, 1350, 1436, 1558
AgeI ACCGGT 2 cut(s) 863, 945
AgsI TTSAA 8 cut(s) 295, 628, 833, 871, 1262, 1360, 1393, 1558
AhlI ACTAGT 1 cut(s) 221
AleI CACNNNNGTG 1 cut(s) 912
Alw21I GWGCWC 1 cut(s) 1124
Alw26I GTCTC 1 cut(s) 1324
AlwI GGATC 1 cut(s) 473
Aor13HI TCCGGA 1 cut(s) 920
AoxI GGCC 4 cut(s) 711, 1092, 1110, 1341
ApeKI GCWGC 1 cut(s) 1310
ApoI RAATTY 4 cut(s) 18, 343, 1262, 1486
AsiGI ACCGGT 2 cut(s) 863, 945
AspA2I CCTAGG 1 cut(s) 109
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 3 cut(s) 469, 943, 1384
AsuC2I CCSGG 2 cut(s) 467, 1577
AsuHPI GGTGA 5 cut(s) 15, 541, 899, 1129, 1586
AvaII GGWCC 3 cut(s) 469, 943, 1384
AvrII CCTAGG 1 cut(s) 109
BbrPI CACGTG 1 cut(s) 1066
Bbv12I GWGCWC 1 cut(s) 1124
BbvI GCAGC 1 cut(s) 1297
BccI CCATC 9 cut(s) 151, 801, 965, 1035, 1177, 1406, 1438, 1489, 1524
BceAI ACGGC 4 cut(s) 1097, 1145, 1275, 1354
BclI TGATCA 1 cut(s) 1413
BcnI CCSGG 2 cut(s) 467, 1577
BcoDI GTCTC 1 cut(s) 1324
BcuI ACTAGT 1 cut(s) 221
BfaI CTAG 8 cut(s) 5, 89, 110, 161, 222, 435, 1271, 1305
BfmI CTRYAG 2 cut(s) 840, 1224
BfuAI ACCTGC 1 cut(s) 1605
BglII AGATCT 1 cut(s) 1640
BisI GCNGC 1 cut(s) 1311
BlnI CCTAGG 1 cut(s) 109
BlsI GCNGC 1 cut(s) 1312
BmcAI AGTACT 1 cut(s) 357
Bme1390I CCNGG 2 cut(s) 467, 1577
Bme18I GGWCC 3 cut(s) 469, 943, 1384
BmgT120I GGNCC 3 cut(s) 469, 943, 1384
BmiI GGNNCC 4 cut(s) 212, 935, 953, 1289
BmrFI CCNGG 2 cut(s) 467, 1577
BmsI GCATC 4 cut(s) 555, 628, 706, 1046
BpuEI CTTGAG 2 cut(s) 70, 344
BpuMI CCSGG 2 cut(s) 467, 1577
BsaAI YACGTR 1 cut(s) 1066
BsaHI GRCGYC 1 cut(s) 984
BsaI GGTCTC 1 cut(s) 1324
BsaJI CCNNGG 6 cut(s) 109, 465, 1283, 1291, 1314, 1370
BsaWI WCCGGW 3 cut(s) 863, 920, 945
BsaXI ACNNNNNCTCC 6 cut(s) 902, 932, 1133, 1163, 1525, 1555
Bsc4I CCNNNNNNNGG 5 cut(s) 863, 1108, 1350, 1436, 1558
Bse118I RCCGGY 4 cut(s) 713, 819, 863, 945
Bse3DI GCAATG 3 cut(s) 719, 1195, 1303
BseAI TCCGGA 1 cut(s) 920
BseDI CCNNGG 6 cut(s) 109, 465, 1283, 1291, 1314, 1370
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 5 cut(s) 863, 1108, 1350, 1436, 1558
BseMI GCAATG 3 cut(s) 719, 1195, 1303
BseRI GAGGAG 2 cut(s) 1138, 1141
BseXI GCAGC 1 cut(s) 1297
BsgI GTGCAG 1 cut(s) 1583
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 4 cut(s) 713, 1094, 1112, 1343
BshTI ACCGGT 2 cut(s) 863, 945
BsiHKAI GWGCWC 1 cut(s) 1124
BsiSI CCGG 7 cut(s) 467, 714, 820, 864, 921, 946, 1576
BslFI GGGAC 1 cut(s) 652
BslI CCNNNNNNNGG 5 cut(s) 863, 1108, 1350, 1436, 1558
BsmAI GTCTC 1 cut(s) 1324
BsmFI GGGAC 1 cut(s) 652
BsmI GAATGC 3 cut(s) 89, 120, 877
BsnI GGCC 4 cut(s) 713, 1094, 1112, 1343
Bso31I GGTCTC 1 cut(s) 1324
Bsp1286I GDGCHC 1 cut(s) 1124
Bsp13I TCCGGA 1 cut(s) 920
Bsp143I GATC 5 cut(s) 61, 478, 1413, 1582, 1640
BspACI CCGC 1 cut(s) 1573
BspANI GGCC 4 cut(s) 713, 1094, 1112, 1343
BspEI TCCGGA 1 cut(s) 920
BspFNI CGCG 1 cut(s) 66
BspLI GGNNCC 4 cut(s) 212, 935, 953, 1289
BspMI ACCTGC 1 cut(s) 1605
BspPI GGATC 1 cut(s) 473
BspTNI GGTCTC 1 cut(s) 1324
BsrDI GCAATG 3 cut(s) 719, 1195, 1303
BsrFI RCCGGY 4 cut(s) 713, 819, 863, 945
BssAI RCCGGY 4 cut(s) 713, 819, 863, 945
BssECI CCNNGG 6 cut(s) 109, 465, 1283, 1291, 1314, 1370
BssMI GATC 5 cut(s) 61, 478, 1413, 1582, 1640
BssNI GRCGYC 1 cut(s) 984
BssT1I CCWWGG 2 cut(s) 109, 1283
Bst4CI ACNGT 3 cut(s) 914, 1318, 1388
BstACI GRCGYC 1 cut(s) 984
BstBAI YACGTR 1 cut(s) 1066
BstC8I GCNNGC 3 cut(s) 650, 1061, 1427
BstDEI CTNAG 1 cut(s) 1522
BstDSI CCRYGG 3 cut(s) 1291, 1314, 1370
BstF5I GGATG 1 cut(s) 143
BstFNI CGCG 1 cut(s) 66
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 5 cut(s) 64, 481, 1416, 1585, 1643
BstMAI GTCTC 1 cut(s) 1324
BstMBI GATC 5 cut(s) 61, 478, 1413, 1582, 1640
BstNSI RCATGY 1 cut(s) 1063
BstSCI CCNGG 2 cut(s) 465, 1575
BstSFI CTRYAG 2 cut(s) 840, 1224
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 1297
BstX2I RGATCY 1 cut(s) 1640
BstYI RGATCY 1 cut(s) 1640
BsuRI GGCC 4 cut(s) 713, 1094, 1112, 1343
BtgI CCRYGG 3 cut(s) 1291, 1314, 1370
BtgZI GCGATG 1 cut(s) 1384
BtsCI GGATG 1 cut(s) 143
BveI ACCTGC 1 cut(s) 1605
Cac8I GCNNGC 3 cut(s) 650, 1061, 1427
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 4 cut(s) 713, 819, 863, 945
Cfr13I GGNCC 3 cut(s) 469, 943, 1384
CseI GACGC 1 cut(s) 992
Csp6I GTAC 2 cut(s) 356, 758
CspAI ACCGGT 2 cut(s) 863, 945
CviAII CATG 7 cut(s) 197, 616, 694, 1060, 1350, 1405, 1537
CviQI GTAC 2 cut(s) 356, 758
DdeI CTNAG 1 cut(s) 1522
DpnI GATC 5 cut(s) 63, 480, 1415, 1584, 1642
DpnII GATC 5 cut(s) 61, 478, 1413, 1582, 1640
DraI TTTAAA 2 cut(s) 408, 1509
EaeI YGGCCR 3 cut(s) 711, 1092, 1110
EciI GGCGGA 1 cut(s) 1562
Eco130I CCWWGG 2 cut(s) 109, 1283
Eco31I GGTCTC 1 cut(s) 1324
Eco47I GGWCC 3 cut(s) 469, 943, 1384
Eco72I CACGTG 1 cut(s) 1066
EcoRI GAATTC 1 cut(s) 1486
EcoT14I CCWWGG 2 cut(s) 109, 1283
EcoT22I ATGCAT 3 cut(s) 621, 699, 1061
ErhI CCWWGG 2 cut(s) 109, 1283
FaeI CATG 7 cut(s) 200, 619, 697, 1063, 1353, 1408, 1540
FalI AAGNNNNNCTT 2 cut(s) 878, 910
FaqI GGGAC 1 cut(s) 652
FatI CATG 7 cut(s) 196, 615, 693, 1059, 1349, 1404, 1536
FbaI TGATCA 1 cut(s) 1413
FblI GTMKAC 1 cut(s) 1046
Fnu4HI GCNGC 1 cut(s) 1311
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 1311
FspBI CTAG 8 cut(s) 5, 89, 110, 161, 222, 435, 1271, 1305
GlaI GCGC 1 cut(s) 136
GluI GCNGC 1 cut(s) 1311
HaeIII GGCC 4 cut(s) 713, 1094, 1112, 1343
HapII CCGG 7 cut(s) 467, 714, 820, 864, 921, 946, 1576
HgaI GACGC 1 cut(s) 992
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 984
Hin1II CATG 7 cut(s) 200, 619, 697, 1063, 1353, 1408, 1540
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 1 cut(s) 1047
HindII GTYRAC 1 cut(s) 1047
HinfI GANTC 8 cut(s) 157, 326, 382, 431, 665, 917, 1043, 1301
HpaII CCGG 7 cut(s) 467, 714, 820, 864, 921, 946, 1576
HphI GGTGA 5 cut(s) 15, 541, 899, 1129, 1586
Hpy166II GTNNAC 3 cut(s) 1047, 1102, 1594
Hpy188I TCNGA 4 cut(s) 172, 933, 968, 1456
Hpy188III TCNNGA 6 cut(s) 49, 472, 628, 784, 797, 921
Hpy8I GTNNAC 3 cut(s) 1047, 1102, 1594
Hpy99I CGWCG 1 cut(s) 747
HpyAV CCTTC 2 cut(s) 1022, 1223
HpyCH4III ACNGT 3 cut(s) 914, 1318, 1388
HpyCH4IV ACGT 1 cut(s) 1065
HpyF3I CTNAG 1 cut(s) 1522
HpySE526I ACGT 1 cut(s) 1065
Hsp92I GRCGYC 1 cut(s) 984
Hsp92II CATG 7 cut(s) 200, 619, 697, 1063, 1353, 1408, 1540
HspAI GCGC 1 cut(s) 135
Kpn2I TCCGGA 1 cut(s) 920
Ksp22I TGATCA 1 cut(s) 1413
Kzo9I GATC 5 cut(s) 61, 478, 1413, 1582, 1640
LmnI GCTCC 2 cut(s) 1287, 1533
Lsp1109I GCAGC 1 cut(s) 1297
LweI GCATC 4 cut(s) 555, 628, 706, 1046
MaeI CTAG 8 cut(s) 5, 89, 110, 161, 222, 435, 1271, 1305
MaeII ACGT 1 cut(s) 1065
MaeIII GTNAC 1 cut(s) 914
MalI GATC 5 cut(s) 63, 480, 1415, 1584, 1642
MboI GATC 5 cut(s) 61, 478, 1413, 1582, 1640
MboII GAAGA 7 cut(s) 886, 889, 920, 1007, 1323, 1592, 1603
MfeI CAATTG 2 cut(s) 1360, 1409
MflI RGATCY 1 cut(s) 1640
MhlI GDGCHC 1 cut(s) 1124
MlyI GAGTC 6 cut(s) 391, 440, 674, 911, 1052, 1295
MmeI TCCRAC 2 cut(s) 683, 884
MnlI CCTC 9 cut(s) 225, 509, 562, 565, 867, 1145, 1159, 1162, 1559
Mph1103I ATGCAT 3 cut(s) 621, 699, 1061
MroI TCCGGA 1 cut(s) 920
MseI TTAA 6 cut(s) 407, 522, 633, 1463, 1497, 1508
MslI CAYNNNNRTG 4 cut(s) 78, 912, 1064, 1403
MspI CCGG 7 cut(s) 467, 714, 820, 864, 921, 946, 1576
MspR9I CCNGG 2 cut(s) 467, 1577
MunI CAATTG 2 cut(s) 1360, 1409
Mva1269I GAATGC 3 cut(s) 89, 120, 877
MvnI CGCG 1 cut(s) 66
NciI CCSGG 2 cut(s) 467, 1577
NdeII GATC 5 cut(s) 61, 478, 1413, 1582, 1640
NlaIII CATG 7 cut(s) 200, 619, 697, 1063, 1353, 1408, 1540
NlaIV GGNNCC 4 cut(s) 212, 935, 953, 1289
NmuCI GTSAC 1 cut(s) 914
NsiI ATGCAT 3 cut(s) 621, 699, 1061
NspI RCATGY 1 cut(s) 1063
OliI CACNNNNGTG 1 cut(s) 912
PaeI GCATGC 1 cut(s) 1063
PaqCI CACCTGC 1 cut(s) 1605
PctI GAATGC 3 cut(s) 89, 120, 877
PfeI GAWTC 2 cut(s) 157, 326
PflMI CCANNNNNTGG 2 cut(s) 1108, 1350
PinAI ACCGGT 2 cut(s) 863, 945
PkrI GCNGC 1 cut(s) 1312
PleI GAGTC 6 cut(s) 390, 439, 673, 911, 1051, 1295
PmaCI CACGTG 1 cut(s) 1066
PmlI CACGTG 1 cut(s) 1066
PpsI GAGTC 6 cut(s) 390, 439, 673, 911, 1051, 1295
Ppu21I YACGTR 1 cut(s) 1066
PspCI CACGTG 1 cut(s) 1066
PspN4I GGNNCC 4 cut(s) 212, 935, 953, 1289
PspPI GGNCC 3 cut(s) 469, 943, 1384
PsrI GAACNNNNNNTAC 2 cut(s) 467, 499
PsuI RGATCY 1 cut(s) 1640
RsaI GTAC 2 cut(s) 357, 759
RsaNI GTAC 2 cut(s) 356, 758
RseI CAYNNNNRTG 4 cut(s) 78, 912, 1064, 1403
SalI GTCGAC 1 cut(s) 1045
SaqAI TTAA 6 cut(s) 407, 522, 633, 1463, 1497, 1508
SatI GCNGC 1 cut(s) 1311
Sau3AI GATC 5 cut(s) 61, 478, 1413, 1582, 1640
Sau96I GGNCC 3 cut(s) 469, 943, 1384
ScaI AGTACT 1 cut(s) 357
SchI GAGTC 6 cut(s) 391, 440, 674, 911, 1052, 1295
ScrFI CCNGG 2 cut(s) 467, 1577
SduI GDGCHC 1 cut(s) 1124
SetI ASST 9 cut(s) 28, 495, 554, 644, 830, 1068, 1216, 1285, 1599
SfaNI GCATC 4 cut(s) 555, 628, 706, 1046
SfcI CTRYAG 2 cut(s) 840, 1224
SinI GGWCC 3 cut(s) 469, 943, 1384
SmiMI CAYNNNNRTG 4 cut(s) 78, 912, 1064, 1403
SmlI CTYRAG 2 cut(s) 49, 359
SmoI CTYRAG 2 cut(s) 49, 359
SpeI ACTAGT 1 cut(s) 221
SphI GCATGC 1 cut(s) 1063
SsiI CCGC 1 cut(s) 1573
SspI AATATT 2 cut(s) 426, 1461
SspMI CTAG 8 cut(s) 5, 89, 110, 161, 222, 435, 1271, 1305
StyD4I CCNGG 2 cut(s) 465, 1575
StyI CCWWGG 2 cut(s) 109, 1283
TaaI ACNGT 3 cut(s) 914, 1318, 1388
TaiI ACGT 1 cut(s) 1068
TaqI TCGA 6 cut(s) 93, 1046, 1054, 1248, 1484, 1528
TatI WGTACW 1 cut(s) 355
TfiI GAWTC 2 cut(s) 157, 326
Tru1I TTAA 6 cut(s) 407, 522, 633, 1463, 1497, 1508
Tru9I TTAA 6 cut(s) 407, 522, 633, 1463, 1497, 1508
TseFI GTSAC 1 cut(s) 914
TseI GCWGC 1 cut(s) 1310
Tsp45I GTSAC 1 cut(s) 914
Van91I CCANNNNNTGG 2 cut(s) 1108, 1350
VpaK11BI GGWCC 3 cut(s) 469, 943, 1384
XapI RAATTY 4 cut(s) 18, 343, 1262, 1486
XceI RCATGY 1 cut(s) 1063
XmaJI CCTAGG 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 1046
XspI CTAG 8 cut(s) 5, 89, 110, 161, 222, 435, 1271, 1305
ZrmI AGTACT 1 cut(s) 357
Zsp2I ATGCAT 3 cut(s) 621, 699, 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.