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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 773, 1608 |
| AccB1I | GGYRCC | 1 cut(s) | 101 |
| AccII | CGCG | 1 cut(s) | 1353 |
| AciI | CCGC | 7 cut(s) | 67, 323, 1025, 1133, 1194, 1224, 1318 |
| AclWI | GGATC | 3 cut(s) | 810, 823, 2044 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 517, 1009, 1485, 2271, 2272, 2497 |
| AflIII | ACRYGT | 4 cut(s) | 608, 1760, 2236, 2494 |
| AhlI | ACTAGT | 1 cut(s) | 1237 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 818, 850 |
| AleI | CACNNNNGTG | 1 cut(s) | 755 |
| AluBI | AGCT | 4 cut(s) | 286, 738, 1345, 1784 |
| AluI | AGCT | 4 cut(s) | 286, 738, 1345, 1784 |
| Alw21I | GWGCWC | 1 cut(s) | 2407 |
| Alw26I | GTCTC | 3 cut(s) | 316, 673, 2373 |
| Alw44I | GTGCAC | 1 cut(s) | 2403 |
| AlwI | GGATC | 3 cut(s) | 810, 823, 2044 |
| Ama87I | CYCGRG | 1 cut(s) | 1695 |
| AoxI | GGCC | 6 cut(s) | 153, 776, 914, 954, 976, 2488 |
| ApaI | GGGCCC | 1 cut(s) | 958 |
| ApaLI | GTGCAC | 1 cut(s) | 2403 |
| ApeKI | GCWGC | 6 cut(s) | 1034, 1097, 1196, 1226, 1320, 2261 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 931, 963, 1616, 1648 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 50, 2172 |
| AspA2I | CCTAGG | 2 cut(s) | 898, 950 |
| AspLEI | GCGC | 2 cut(s) | 1355, 1689 |
| AspS9I | GGNCC | 3 cut(s) | 947, 954, 955 |
| AsuC2I | CCSGG | 3 cut(s) | 1696, 1697, 2038 |
| AsuHPI | GGTGA | 4 cut(s) | 1448, 1553, 2199, 2549 |
| AsuNHI | GCTAGC | 1 cut(s) | 1784 |
| AvaI | CYCGRG | 1 cut(s) | 1695 |
| AvaII | GGWCC | 1 cut(s) | 947 |
| AvrII | CCTAGG | 2 cut(s) | 898, 950 |
| AxyI | CCTNAGG | 1 cut(s) | 2297 |
| BaeGI | GKGCMC | 3 cut(s) | 524, 958, 2407 |
| BamHI | GGATCC | 1 cut(s) | 815 |
| BanI | GGYRCC | 1 cut(s) | 101 |
| BanII | GRGCYC | 1 cut(s) | 958 |
| Bbv12I | GWGCWC | 1 cut(s) | 2407 |
| BbvI | GCAGC | 6 cut(s) | 1046, 1109, 1208, 1238, 1332, 2248 |
| BccI | CCATC | 5 cut(s) | 181, 1211, 1801, 2158, 2304 |
| BceAI | ACGGC | 3 cut(s) | 957, 987, 2456 |
| BcnI | CCSGG | 3 cut(s) | 1696, 1697, 2038 |
| BcoDI | GTCTC | 3 cut(s) | 316, 673, 2373 |
| BcuI | ACTAGT | 1 cut(s) | 1237 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 922 |
| BlnI | CCTAGG | 2 cut(s) | 898, 950 |
| Bme1390I | CCNGG | 3 cut(s) | 1696, 1697, 2038 |
| Bme18I | GGWCC | 1 cut(s) | 947 |
| BmeT110I | CYCGRG | 1 cut(s) | 1695 |
| BmgT120I | GGNCC | 3 cut(s) | 947, 954, 955 |
| BmiI | GGNNCC | 8 cut(s) | 103, 421, 807, 817, 956, 1775, 2244, 2294 |
| BmrFI | CCNGG | 3 cut(s) | 1696, 1697, 2038 |
| BmsI | GCATC | 2 cut(s) | 785, 2111 |
| BmtI | GCTAGC | 1 cut(s) | 1788 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 18, 50 |
| BpmI | CTGGAG | 1 cut(s) | 406 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1128 |
| BpuMI | CCSGG | 3 cut(s) | 1696, 1697, 2038 |
| Bsa29I | ATCGAT | 1 cut(s) | 2048 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1168, 1198 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 517, 1009, 1485, 2271, 2272, 2497 |
| Bse1I | ACTGG | 3 cut(s) | 5, 423, 2165 |
| Bse21I | CCTNAGG | 1 cut(s) | 2297 |
| BseCI | ATCGAT | 1 cut(s) | 2048 |
| BseGI | GGATG | 6 cut(s) | 1203, 1289, 1299, 1793, 2169, 2315 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 517, 1009, 1485, 2271, 2272, 2497 |
| BseMII | CTCAG | 2 cut(s) | 2015, 2288 |
| BseNI | ACTGG | 3 cut(s) | 5, 423, 2165 |
| BseRI | GAGGAG | 2 cut(s) | 1355, 2235 |
| BseSI | GKGCMC | 3 cut(s) | 524, 958, 2407 |
| BseXI | GCAGC | 6 cut(s) | 1046, 1109, 1208, 1238, 1332, 2248 |
| Bsh1236I | CGCG | 1 cut(s) | 1353 |
| BshFI | GGCC | 6 cut(s) | 155, 778, 916, 956, 978, 2490 |
| BshNI | GGYRCC | 1 cut(s) | 101 |
| BshVI | ATCGAT | 1 cut(s) | 2048 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2407 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1695 |
| BsiSI | CCGG | 2 cut(s) | 1696, 2038 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 517, 1009, 1485, 2271, 2272, 2497 |
| BsmAI | GTCTC | 3 cut(s) | 316, 673, 2373 |
| BsmI | GAATGC | 4 cut(s) | 67, 656, 1630, 1788 |
| BsnI | GGCC | 6 cut(s) | 155, 778, 916, 956, 978, 2490 |
| BsoBI | CYCGRG | 1 cut(s) | 1695 |
| Bsp120I | GGGCCC | 1 cut(s) | 954 |
| Bsp1286I | GDGCHC | 3 cut(s) | 524, 958, 2407 |
| Bsp143I | GATC | 4 cut(s) | 239, 815, 2045, 2049 |
| Bsp19I | CCATGG | 2 cut(s) | 246, 257 |
| BspACI | CCGC | 7 cut(s) | 67, 323, 1025, 1133, 1194, 1224, 1318 |
| BspANI | GGCC | 6 cut(s) | 155, 778, 916, 956, 978, 2490 |
| BspCNI | CTCAG | 2 cut(s) | 2014, 2289 |
| BspDI | ATCGAT | 1 cut(s) | 2048 |
| BspFNI | CGCG | 1 cut(s) | 1353 |
| BspHI | TCATGA | 2 cut(s) | 1494, 1711 |
| BspLI | GGNNCC | 8 cut(s) | 103, 421, 807, 817, 956, 1775, 2244, 2294 |
| BspOI | GCTAGC | 1 cut(s) | 1788 |
| BspPI | GGATC | 3 cut(s) | 810, 823, 2044 |
| BspT107I | GGYRCC | 1 cut(s) | 101 |
| BsrI | ACTGG | 3 cut(s) | 5, 423, 2165 |
| BssMI | GATC | 4 cut(s) | 239, 815, 2045, 2049 |
| BssT1I | CCWWGG | 6 cut(s) | 246, 257, 317, 689, 898, 950 |
| BstC8I | GCNNGC | 4 cut(s) | 67, 1460, 1786, 2117 |
| BstDEI | CTNAG | 6 cut(s) | 57, 1128, 1867, 1881, 2001, 2297 |
| BstDSI | CCRYGG | 3 cut(s) | 246, 257, 973 |
| BstF5I | GGATG | 6 cut(s) | 1203, 1289, 1299, 1793, 2169, 2315 |
| BstFNI | CGCG | 1 cut(s) | 1353 |
| BstHHI | GCGC | 2 cut(s) | 1355, 1689 |
| BstKTI | GATC | 4 cut(s) | 242, 818, 2048, 2052 |
| BstMAI | GTCTC | 3 cut(s) | 316, 673, 2373 |
| BstMBI | GATC | 4 cut(s) | 239, 815, 2045, 2049 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 426, 922 |
| BstNSI | RCATGY | 5 cut(s) | 612, 1764, 2119, 2240, 2498 |
| BstSCI | CCNGG | 3 cut(s) | 1694, 1695, 2036 |
| BstSLI | GKGCMC | 3 cut(s) | 524, 958, 2407 |
| BstUI | CGCG | 1 cut(s) | 1353 |
| BstV1I | GCAGC | 6 cut(s) | 1046, 1109, 1208, 1238, 1332, 2248 |
| BstX2I | RGATCY | 1 cut(s) | 815 |
| BstYI | RGATCY | 1 cut(s) | 815 |
| Bsu15I | ATCGAT | 1 cut(s) | 2048 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2297 |
| BsuRI | GGCC | 6 cut(s) | 155, 778, 916, 956, 978, 2490 |
| BsuTUI | ATCGAT | 1 cut(s) | 2048 |
| BtgI | CCRYGG | 3 cut(s) | 246, 257, 973 |
| BtsCI | GGATG | 6 cut(s) | 1203, 1289, 1299, 1793, 2169, 2315 |
| BtsIMutI | CAGTG | 1 cut(s) | 12 |
| Cac8I | GCNNGC | 4 cut(s) | 67, 1460, 1786, 2117 |
| CciI | TCATGA | 2 cut(s) | 1494, 1711 |
| CfoI | GCGC | 2 cut(s) | 1355, 1689 |
| Cfr13I | GGNCC | 3 cut(s) | 947, 954, 955 |
| Cfr9I | CCCGGG | 1 cut(s) | 1695 |
| ClaI | ATCGAT | 1 cut(s) | 2048 |
| DdeI | CTNAG | 6 cut(s) | 57, 1128, 1867, 1881, 2001, 2297 |
| DpnI | GATC | 4 cut(s) | 241, 817, 2047, 2051 |
| DpnII | GATC | 4 cut(s) | 239, 815, 2045, 2049 |
| DraI | TTTAAA | 1 cut(s) | 1116 |
| Eco130I | CCWWGG | 6 cut(s) | 246, 257, 317, 689, 898, 950 |
| Eco147I | AGGCCT | 1 cut(s) | 155 |
| Eco24I | GRGCYC | 1 cut(s) | 958 |
| Eco47I | GGWCC | 1 cut(s) | 947 |
| Eco81I | CCTNAGG | 1 cut(s) | 2297 |
| Eco88I | CYCGRG | 1 cut(s) | 1695 |
| EcoO109I | RGGNCCY | 3 cut(s) | 947, 954, 955 |
| EcoRI | GAATTC | 1 cut(s) | 833 |
| EcoT14I | CCWWGG | 6 cut(s) | 246, 257, 317, 689, 898, 950 |
| EcoT22I | ATGCAT | 1 cut(s) | 2117 |
| EcoT38I | GRGCYC | 1 cut(s) | 958 |
| ErhI | CCWWGG | 6 cut(s) | 246, 257, 317, 689, 898, 950 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 275, 307, 1329, 1361 |
| FauI | CCCGC | 1 cut(s) | 74 |
| FokI | GGATG | 6 cut(s) | 1190, 1276, 1286, 1780, 2176, 2322 |
| FriOI | GRGCYC | 1 cut(s) | 958 |
| GlaI | GCGC | 2 cut(s) | 1354, 1688 |
| GsuI | CTGGAG | 1 cut(s) | 406 |
| HaeIII | GGCC | 6 cut(s) | 155, 778, 916, 956, 978, 2490 |
| HapII | CCGG | 2 cut(s) | 1696, 2038 |
| HhaI | GCGC | 2 cut(s) | 1355, 1689 |
| Hin6I | GCGC | 2 cut(s) | 1353, 1687 |
| HinP1I | GCGC | 2 cut(s) | 1353, 1687 |
| HincII | GTYRAC | 3 cut(s) | 894, 1635, 1656 |
| HindII | GTYRAC | 3 cut(s) | 894, 1635, 1656 |
| HpaI | GTTAAC | 1 cut(s) | 894 |
| HpaII | CCGG | 2 cut(s) | 1696, 2038 |
| HphI | GGTGA | 4 cut(s) | 1448, 1553, 2199, 2549 |
| Hpy166II | GTNNAC | 5 cut(s) | 750, 894, 1635, 1656, 2405 |
| Hpy188I | TCNGA | 5 cut(s) | 385, 391, 397, 1057, 2530 |
| Hpy188III | TCNNGA | 7 cut(s) | 35, 1495, 1712, 2043, 2296, 2451, 2522 |
| Hpy8I | GTNNAC | 5 cut(s) | 750, 894, 1635, 1656, 2405 |
| HpyCH4IV | ACGT | 1 cut(s) | 1991 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 426, 922 |
| HpyF3I | CTNAG | 6 cut(s) | 57, 1128, 1867, 1881, 2001, 2297 |
| HpySE526I | ACGT | 1 cut(s) | 1991 |
| HspAI | GCGC | 2 cut(s) | 1353, 1687 |
| KspAI | GTTAAC | 1 cut(s) | 894 |
| Kzo9I | GATC | 4 cut(s) | 239, 815, 2045, 2049 |
| LmnI | GCTCC | 6 cut(s) | 425, 713, 805, 1342, 2248, 2298 |
| LpnPI | CCDG | 8 cut(s) | 18, 83, 436, 1256, 1709, 2051, 2146, 2309 |
| Lsp1109I | GCAGC | 6 cut(s) | 1046, 1109, 1208, 1238, 1332, 2248 |
| LweI | GCATC | 2 cut(s) | 785, 2111 |
| MaeII | ACGT | 1 cut(s) | 1991 |
| MaeIII | GTNAC | 4 cut(s) | 28, 1570, 1756, 2230 |
| MalI | GATC | 4 cut(s) | 241, 817, 2047, 2051 |
| MboI | GATC | 4 cut(s) | 239, 815, 2045, 2049 |
| MflI | RGATCY | 1 cut(s) | 815 |
| MhlI | GDGCHC | 3 cut(s) | 524, 958, 2407 |
| MlyI | GAGTC | 3 cut(s) | 675, 1960, 1993 |
| MmeI | TCCRAC | 4 cut(s) | 849, 868, 886, 1466 |
| Mph1103I | ATGCAT | 1 cut(s) | 2117 |
| MroXI | GAANNNNTTC | 2 cut(s) | 50, 2172 |
| MslI | CAYNNNNRTG | 6 cut(s) | 665, 721, 755, 1453, 2139, 2506 |
| MspI | CCGG | 2 cut(s) | 1696, 2038 |
| MspR9I | CCNGG | 3 cut(s) | 1696, 1697, 2038 |
| Mva1269I | GAATGC | 4 cut(s) | 67, 656, 1630, 1788 |
| MvnI | CGCG | 1 cut(s) | 1353 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 426, 922 |
| NciI | CCSGG | 3 cut(s) | 1696, 1697, 2038 |
| NcoI | CCATGG | 2 cut(s) | 246, 257 |
| NdeII | GATC | 4 cut(s) | 239, 815, 2045, 2049 |
| NheI | GCTAGC | 1 cut(s) | 1784 |
| NlaIV | GGNNCC | 8 cut(s) | 103, 421, 807, 817, 956, 1775, 2244, 2294 |
| NmeAIII | GCCGAG | 1 cut(s) | 2350 |
| NmuCI | GTSAC | 1 cut(s) | 1756 |
| NsiI | ATGCAT | 1 cut(s) | 2117 |
| NspI | RCATGY | 5 cut(s) | 612, 1764, 2119, 2240, 2498 |
| OliI | CACNNNNGTG | 1 cut(s) | 755 |
| PaeI | GCATGC | 1 cut(s) | 2119 |
| PagI | TCATGA | 2 cut(s) | 1494, 1711 |
| PceI | AGGCCT | 1 cut(s) | 155 |
| PciI | ACATGT | 4 cut(s) | 608, 1760, 2236, 2494 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1628 |
| PctI | GAATGC | 4 cut(s) | 67, 656, 1630, 1788 |
| PdmI | GAANNNNTTC | 2 cut(s) | 50, 2172 |
| PleI | GAGTC | 3 cut(s) | 675, 1959, 1993 |
| PpsI | GAGTC | 3 cut(s) | 675, 1959, 1993 |
| PpuMI | RGGWCCY | 1 cut(s) | 947 |
| PscI | ACATGT | 4 cut(s) | 608, 1760, 2236, 2494 |
| PsiI | TTATAA | 2 cut(s) | 773, 1608 |
| Psp5II | RGGWCCY | 1 cut(s) | 947 |
| PspN4I | GGNNCC | 8 cut(s) | 103, 421, 807, 817, 956, 1775, 2244, 2294 |
| PspOMI | GGGCCC | 1 cut(s) | 954 |
| PspPI | GGNCC | 3 cut(s) | 947, 954, 955 |
| PspPPI | RGGWCCY | 1 cut(s) | 947 |
| PsuI | RGATCY | 1 cut(s) | 815 |
| RseI | CAYNNNNRTG | 6 cut(s) | 665, 721, 755, 1453, 2139, 2506 |
| Sau3AI | GATC | 4 cut(s) | 239, 815, 2045, 2049 |
| Sau96I | GGNCC | 3 cut(s) | 947, 954, 955 |
| SchI | GAGTC | 3 cut(s) | 675, 1960, 1993 |
| ScrFI | CCNGG | 3 cut(s) | 1696, 1697, 2038 |
| SduI | GDGCHC | 3 cut(s) | 524, 958, 2407 |
| SfaNI | GCATC | 2 cut(s) | 785, 2111 |
| SinI | GGWCC | 1 cut(s) | 947 |
| SmaI | CCCGGG | 1 cut(s) | 1697 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 665, 721, 755, 1453, 2139, 2506 |
| SpeI | ACTAGT | 1 cut(s) | 1237 |
| SphI | GCATGC | 1 cut(s) | 2119 |
| SseBI | AGGCCT | 1 cut(s) | 155 |
| SsiI | CCGC | 7 cut(s) | 67, 323, 1025, 1133, 1194, 1224, 1318 |
| StuI | AGGCCT | 1 cut(s) | 155 |
| StyD4I | CCNGG | 3 cut(s) | 1694, 1695, 2036 |
| StyI | CCWWGG | 6 cut(s) | 246, 257, 317, 689, 898, 950 |
| TaiI | ACGT | 1 cut(s) | 1994 |
| TaqI | TCGA | 6 cut(s) | 36, 179, 238, 346, 1721, 2048 |
| TauI | GCSGC | 4 cut(s) | 326, 1135, 1196, 1320 |
| TscAI | CASTG | 1 cut(s) | 12 |
| TseFI | GTSAC | 1 cut(s) | 1756 |
| TseI | GCWGC | 6 cut(s) | 1034, 1097, 1196, 1226, 1320, 2261 |
| Tsp45I | GTSAC | 1 cut(s) | 1756 |
| TspMI | CCCGGG | 1 cut(s) | 1695 |
| TspRI | CASTG | 1 cut(s) | 12 |
| VneI | GTGCAC | 1 cut(s) | 2403 |
| VpaK11BI | GGWCC | 1 cut(s) | 947 |
| XbaI | TCTAGA | 3 cut(s) | 2042, 2450, 2521 |
| XceI | RCATGY | 5 cut(s) | 612, 1764, 2119, 2240, 2498 |
| XmaI | CCCGGG | 1 cut(s) | 1695 |
| XmaJI | CCTAGG | 2 cut(s) | 898, 950 |
| XmnI | GAANNNNTTC | 2 cut(s) | 50, 2172 |
| Zsp2I | ATGCAT | 1 cut(s) | 2117 |