pycom12426g00390

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012426
Physical Location & Seq
Forward (+)
216193 .. 218976
2784 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12426g00390.10

Sequence Viewer

Length: 2271 bp
ATGGTTTTGGGCGGATTGGGGTTGGGTTTGGTCTTGGCCGTGGGTGTTGGTGTAAAACCCCGGGGGTTGCTGCCTAAAGCCTCCTTGTTGGTAAGGTTGTTGAGGCTCCCTCCACTTGAAGTTTGGATGGTCTCTCCAACCCGGATTGTATGTATTGGAATATGGATCATTCCTTGGTTGATTTTGGCTTGGAAATCCAATGGCGTTTGCACTCTCCCATCCCCCATTCTCAATCAATTGAGGGCACTTTTCCGAAGGATGACTTTGAATAGAACATACGCCACATACAATTGGACTTTGGATCTTCATTCCTTCGGCCATCTGAGACACAAGAGAAGTAAGATTAGCTATTTGAGTTTGAAGGTCGGATTGAGAACTTACCTCATTCACTTGTTGCCGTGGGGGGTCCTTTTGCCCAATTCCTTCGTATTGTTGTGCATTGAGAGCTCGGTTTGCAATGAGGTTCTTGGCTGCCATAGGGGTTTTATCCACCAACGCTCCTCCCGCCGAAGCATCAAGCATTTGTCTTTCAATGGGACGAAGACCTTCATAGAAAGTTTTAAAACGCTCATAGTATGTTGGAAAAGACTCCCCTTGACTTTAACTTTTCAAGAAATGCTCGCATCAATGCTTTCCCAAGAAGTGACCGTTCCGGGTGCTAACTCGTATAACCAATCCTTGGCTCTCTCCAAAAGTGAGAACGGGAAGACCTTCATCTTCAAAATGCTACCATCAACGTTAACTGGAGTCATGCTCGAACACACCACCTCGAACTCCTTCAAATGCTTGTTGGGATCCTCCATGGACATCAAATTCGTCGGTCTTGTCTTGAGCCACCCTTGGGTATTGGATGCACAAGGGTGCGGCATTGGCCAATCCCGAAGCGGAAAGCTCCTTGATTGTTCGGTTGTCCGCTTGATAGGAGCATATTCATGCGACTTAAATGGCTTGTTCTCGTTTTCGTGTGTTTGTAGGTCCAAAGGGCTAAAGGAGCAAAAAGATGCATTTTGGAGACTTTTGGAGCACTTTTGGTGTTGGAACTTTGTTCCCTTTAGTTTTAGGACATTTAAACCTTTCCAATTCCCTTATGCCGTGCATCTCCACCTTTCTCCCAAAACCATACACATGCATTCATTATTCATTCCCTCACATGCTCCCATTACTTATCATCACCACTTATCACTTATCATAACCACATATCATATCACTTATCATAACCATACACTTATCACTTATCATACCCATAATCATCTACACCTTGCAACCACATTCATCACCAAAGAAACCATCATTTCACCACATTCCCTTGCATTCCAACCAAAACCGTGCACATGCTATCACCATGCATTCACATGCACTTGTTCCTCCATCATTCCATCCTTTAAAACATTCCACATGCACATTCATTCATTCAGAAAATACATCCTTTGCACATGCATTCACTCACCACAAACAAGTCACATGCATTCATCAACATATCTAGCTGTCATTCACATCATTCAAACATGCAGCCACACCTTCACCCACATGCACCATTCAAACATACACCCAAACACCACCAGAAATCATCATTGCCGTGGCTCCTCCTCCAGATTTCCAACATTCAATCATTCACACCCCTTTAATCCACTTGCAATCTTCCACATCCCTCACCAAGAAATCATTCAACACATCTCATTTCAGATTGGCATTCCATTTTATTGCACATGCATCTTCATAAATCAACACATGCATTCATTATTCATTTACTTTGCATCCTTTAATTTAATCACATGCACATTTAAACAAACACAATCATTCCACCCATGCCGTGCACATTCATACACTTTCACATGCATCTTGGCAGCTTTCACATGCACACACATGCATTTCCAGCACCAACAACACTCATTGCCGTGCACATTCACAACCCATACCATTCCAGCATTTAAATACTCATTCATAAACTCTTCCATATTCAGAAAACCATCTCATACACATTCATTCACATTTTCTGCCCAAAAACACTCCTTGCCTTTCCCTACATCCATCCCTACCCTAAACACATCATTCTACATCATCCATAACCCCCAAAACTCACCAAAACCCCTTGTGCTGCAGCAACTAGAGGAGAAGAGGCCTAAACGTTCATACAATTCAAGATTGAGTTTACTTTGTTATTACTCTCTAAGGGAAAGTTTGAAACCATGGACATATGTTGGTTATGATTTGATTTACTCCAGTTATGAATTCATGAACTTTAGATGTGGTTTACTTTTCTGTTTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

757

Amino Acids

86.96

Weight (kDa)

9.56

Isoelectric Point (pI)

53.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 679
AciI CCGC 5 cut(s) 12, 505, 864, 885, 913
AclI AACGTT 2 cut(s) 737, 2125
AclWI GGATC 4 cut(s) 173, 309, 789, 802
AcoI YGGCCR 3 cut(s) 36, 316, 871
AcsI RAATTY 2 cut(s) 812, 2228
AfiI CCNNNNNNNGG 2 cut(s) 679, 841
AjuI GAANNNNNNNTTGG 2 cut(s) 1647, 1679
AleI CACNNNNGTG 1 cut(s) 859
AluBI AGCT 5 cut(s) 348, 447, 892, 1484, 1847
AluI AGCT 5 cut(s) 348, 447, 892, 1484, 1847
Alw21I GWGCWC 5 cut(s) 449, 1026, 1331, 1816, 1901
Alw26I GTCTC 3 cut(s) 136, 319, 1006
Alw44I GTGCAC 3 cut(s) 1327, 1812, 1897
AlwI GGATC 4 cut(s) 173, 309, 789, 802
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 4 cut(s) 36, 316, 871, 2117
ApaLI GTGCAC 3 cut(s) 1327, 1812, 1897
ApeKI GCWGC 6 cut(s) 70, 471, 1509, 1844, 2095, 2098
ApoI RAATTY 2 cut(s) 812, 2228
ArsI GACNNNNNNTTYG 2 cut(s) 797, 829
Asp700I GAANNNNTTC 4 cut(s) 545, 710, 776, 1662
AspS9I GGNCC 2 cut(s) 406, 975
AsuC2I CCSGG 4 cut(s) 61, 62, 142, 654
AsuHPI GGTGA 8 cut(s) 1163, 1267, 1287, 1331, 1437, 1513, 1643, 2070
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 2 cut(s) 406, 975
BaeGI GKGCMC 4 cut(s) 247, 1331, 1816, 1901
BalI TGGCCA 1 cut(s) 873
BamHI GGATCC 1 cut(s) 794
BanII GRGCYC 1 cut(s) 449
BbsI GAAGAC 2 cut(s) 548, 713
Bbv12I GWGCWC 5 cut(s) 449, 1026, 1331, 1816, 1901
BbvI GCAGC 6 cut(s) 57, 458, 1521, 1856, 2082, 2110
BccI CCATC 9 cut(s) 121, 226, 327, 739, 1295, 1376, 1384, 1975, 2036
BceAI ACGGC 6 cut(s) 23, 382, 1076, 1560, 1794, 1879
BcnI CCSGG 4 cut(s) 61, 62, 142, 654
BcoDI GTCTC 3 cut(s) 136, 319, 1006
BfaI CTAG 2 cut(s) 1481, 2105
BfmI CTRYAG 1 cut(s) 2096
BisI GCNGC 7 cut(s) 71, 472, 865, 1510, 1845, 2096, 2099
BlsI GCNGC 7 cut(s) 72, 473, 866, 1511, 1846, 2097, 2100
Bme1390I CCNGG 4 cut(s) 61, 62, 142, 654
Bme18I GGWCC 2 cut(s) 406, 975
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 2 cut(s) 406, 975
BmiI GGNNCC 4 cut(s) 107, 407, 796, 1582
BmrFI CCNGG 4 cut(s) 61, 62, 142, 654
BmsI GCATC 8 cut(s) 522, 632, 841, 991, 1105, 1719, 1763, 1845
BpiI GAAGAC 2 cut(s) 548, 713
BplI GAGNNNNNCTC 4 cut(s) 94, 126, 738, 770
BpmI CTGGAG 3 cut(s) 765, 1573, 2203
BpuEI CTTGAG 1 cut(s) 850
BpuMI CCSGG 4 cut(s) 61, 62, 142, 654
BsaI GGTCTC 1 cut(s) 136
BsaXI ACNNNNNCTCC 2 cut(s) 482, 512
Bsc4I CCNNNNNNNGG 2 cut(s) 679, 841
Bse1I ACTGG 2 cut(s) 748, 2220
Bse3DI GCAATG 3 cut(s) 463, 1570, 1889
BseLI CCNNNNNNNGG 2 cut(s) 679, 841
BseMI GCAATG 3 cut(s) 463, 1570, 1889
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 2 cut(s) 748, 2220
BseRI GAGGAG 4 cut(s) 490, 1573, 1576, 2123
BseSI GKGCMC 4 cut(s) 247, 1331, 1816, 1901
BseXI GCAGC 6 cut(s) 57, 458, 1521, 1856, 2082, 2110
BshFI GGCC 4 cut(s) 38, 318, 873, 2119
BsiHKAI GWGCWC 5 cut(s) 449, 1026, 1331, 1816, 1901
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 3 cut(s) 61, 142, 653
BslFI GGGAC 1 cut(s) 550
BslI CCNNNNNNNGG 2 cut(s) 679, 841
BsmAI GTCTC 3 cut(s) 136, 319, 1006
BsmFI GGGAC 1 cut(s) 550
BsmI GAATGC 7 cut(s) 1129, 1310, 1346, 1437, 1465, 1689, 1732
BsnI GGCC 4 cut(s) 38, 318, 873, 2119
Bso31I GGTCTC 1 cut(s) 136
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 6 cut(s) 247, 449, 1026, 1331, 1816, 1901
Bsp143I GATC 3 cut(s) 165, 301, 794
Bsp19I CCATGG 2 cut(s) 801, 2186
BspACI CCGC 5 cut(s) 12, 505, 864, 885, 913
BspANI GGCC 4 cut(s) 38, 318, 873, 2119
BspCNI CTCAG 1 cut(s) 315
BspHI TCATGA 1 cut(s) 2232
BspLI GGNNCC 4 cut(s) 107, 407, 796, 1582
BspMAI CTGCAG 1 cut(s) 2100
BspPI GGATC 4 cut(s) 173, 309, 789, 802
BspTNI GGTCTC 1 cut(s) 136
BsrDI GCAATG 3 cut(s) 463, 1570, 1889
BsrI ACTGG 2 cut(s) 748, 2220
BssMI GATC 3 cut(s) 165, 301, 794
BssT1I CCWWGG 5 cut(s) 173, 678, 801, 839, 2186
Bst4CI ACNGT 2 cut(s) 649, 1326
Bst6I CTCTTC 2 cut(s) 1954, 2108
BstC8I GCNNGC 1 cut(s) 621
BstDEI CTNAG 2 cut(s) 323, 2168
BstDSI CCRYGG 5 cut(s) 39, 398, 801, 1576, 2186
BstKTI GATC 3 cut(s) 168, 304, 797
BstMAI GTCTC 3 cut(s) 136, 319, 1006
BstMBI GATC 3 cut(s) 165, 301, 794
BstMWI GCNNNNNNNGC 6 cut(s) 444, 453, 504, 870, 991, 1873
BstSCI CCNGG 4 cut(s) 59, 60, 140, 652
BstSFI CTRYAG 1 cut(s) 2096
BstSLI GKGCMC 4 cut(s) 247, 1331, 1816, 1901
BstV1I GCAGC 6 cut(s) 57, 458, 1521, 1856, 2082, 2110
BstV2I GAAGAC 2 cut(s) 548, 713
BstX2I RGATCY 2 cut(s) 301, 794
BstYI RGATCY 2 cut(s) 301, 794
BsuRI GGCC 4 cut(s) 38, 318, 873, 2119
BtgI CCRYGG 5 cut(s) 39, 398, 801, 1576, 2186
Cac8I GCNNGC 1 cut(s) 621
CciI TCATGA 1 cut(s) 2232
Cfr13I GGNCC 2 cut(s) 406, 975
Cfr9I CCCGGG 1 cut(s) 60
DdeI CTNAG 2 cut(s) 323, 2168
DpnI GATC 3 cut(s) 167, 303, 796
DpnII GATC 3 cut(s) 165, 301, 794
DraI TTTAAA 5 cut(s) 562, 1069, 1384, 1783, 1930
EaeI YGGCCR 3 cut(s) 36, 316, 871
Eam1104I CTCTTC 2 cut(s) 1954, 2108
EarI CTCTTC 2 cut(s) 1954, 2108
EciI GGCGGA 1 cut(s) 27
Ecl136II GAGCTC 1 cut(s) 447
Eco130I CCWWGG 5 cut(s) 173, 678, 801, 839, 2186
Eco147I AGGCCT 1 cut(s) 2119
Eco24I GRGCYC 1 cut(s) 449
Eco31I GGTCTC 1 cut(s) 136
Eco47I GGWCC 2 cut(s) 406, 975
Eco53kI GAGCTC 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 447
EcoO109I RGGNCCY 1 cut(s) 406
EcoRI GAATTC 1 cut(s) 2228
EcoT14I CCWWGG 5 cut(s) 173, 678, 801, 839, 2186
EcoT22I ATGCAT 9 cut(s) 1006, 1131, 1348, 1439, 1467, 1712, 1734, 1838, 1869
EcoT38I GRGCYC 1 cut(s) 449
ErhI CCWWGG 5 cut(s) 173, 678, 801, 839, 2186
FalI AAGNNNNNCTT 2 cut(s) 247, 279
FaqI GGGAC 1 cut(s) 550
FauI CCCGC 1 cut(s) 512
FauNDI CATATG 1 cut(s) 2194
Fnu4HI GCNGC 7 cut(s) 71, 472, 865, 1510, 1845, 2096, 2099
FriOI GRGCYC 1 cut(s) 449
Fsp4HI GCNGC 7 cut(s) 71, 472, 865, 1510, 1845, 2096, 2099
FspBI CTAG 2 cut(s) 1481, 2105
GluI GCNGC 7 cut(s) 71, 472, 865, 1510, 1845, 2096, 2099
GsuI CTGGAG 3 cut(s) 765, 1573, 2203
HaeIII GGCC 4 cut(s) 38, 318, 873, 2119
HapII CCGG 3 cut(s) 61, 142, 653
HincII GTYRAC 1 cut(s) 741
HindII GTYRAC 1 cut(s) 741
HinfI GANTC 2 cut(s) 588, 747
HpaI GTTAAC 1 cut(s) 741
HpaII CCGG 3 cut(s) 61, 142, 653
HphI GGTGA 8 cut(s) 1163, 1267, 1287, 1331, 1437, 1513, 1643, 2070
Hpy166II GTNNAC 6 cut(s) 741, 1329, 1814, 1899, 2150, 2252
Hpy188I TCNGA 6 cut(s) 254, 324, 368, 1415, 1683, 1961
Hpy188III TCNNGA 6 cut(s) 611, 829, 879, 1590, 2139, 2233
Hpy8I GTNNAC 6 cut(s) 741, 1329, 1814, 1899, 2150, 2252
Hpy99I CGWCG 1 cut(s) 821
HpyAV CCTTC 8 cut(s) 249, 322, 355, 433, 556, 721, 787, 1528
HpyCH4III ACNGT 2 cut(s) 649, 1326
HpyCH4IV ACGT 2 cut(s) 737, 2125
HpyF10VI GCNNNNNNNGC 6 cut(s) 444, 453, 504, 870, 991, 1873
HpyF3I CTNAG 2 cut(s) 323, 2168
HpySE526I ACGT 2 cut(s) 737, 2125
KspAI GTTAAC 1 cut(s) 741
Kzo9I GATC 3 cut(s) 165, 301, 794
LmnI GCTCC 8 cut(s) 111, 503, 897, 923, 991, 1021, 1159, 1586
LpnPI CCDG 9 cut(s) 74, 155, 666, 729, 1573, 1603, 1886, 1935, 2233
Lsp1109I GCAGC 6 cut(s) 57, 458, 1521, 1856, 2082, 2110
LweI GCATC 8 cut(s) 522, 632, 841, 991, 1105, 1719, 1763, 1845
MaeI CTAG 2 cut(s) 1481, 2105
MaeII ACGT 2 cut(s) 737, 2125
MaeIII GTNAC 2 cut(s) 643, 1457
MalI GATC 3 cut(s) 167, 303, 796
MboI GATC 3 cut(s) 165, 301, 794
MboII GAAGA 8 cut(s) 296, 553, 709, 718, 1630, 1705, 1941, 2125
MfeI CAATTG 2 cut(s) 236, 289
MflI RGATCY 2 cut(s) 301, 794
MhlI GDGCHC 6 cut(s) 247, 449, 1026, 1331, 1816, 1901
MlsI TGGCCA 1 cut(s) 873
MluCI AATT 8 cut(s) 236, 289, 418, 812, 1079, 1762, 2134, 2228
MluNI TGGCCA 1 cut(s) 873
MlyI GAGTC 2 cut(s) 582, 756
MmeI TCCRAC 6 cut(s) 161, 346, 560, 1016, 1339, 1622
Mox20I TGGCCA 1 cut(s) 873
Mph1103I ATGCAT 9 cut(s) 1006, 1131, 1348, 1439, 1467, 1712, 1734, 1838, 1869
MroXI GAANNNNTTC 4 cut(s) 545, 710, 776, 1662
MscI TGGCCA 1 cut(s) 873
MslI CAYNNNNRTG 8 cut(s) 859, 931, 1124, 1351, 1526, 1575, 1862, 1894
Msp20I TGGCCA 1 cut(s) 873
MspI CCGG 3 cut(s) 61, 142, 653
MspR9I CCNGG 4 cut(s) 61, 62, 142, 654
MunI CAATTG 2 cut(s) 236, 289
Mva1269I GAATGC 7 cut(s) 1129, 1310, 1346, 1437, 1465, 1689, 1732
MwoI GCNNNNNNNGC 6 cut(s) 444, 453, 504, 870, 991, 1873
NciI CCSGG 4 cut(s) 61, 62, 142, 654
NcoI CCATGG 2 cut(s) 801, 2186
NdeI CATATG 1 cut(s) 2194
NdeII GATC 3 cut(s) 165, 301, 794
NlaIV GGNNCC 4 cut(s) 107, 407, 796, 1582
NmuCI GTSAC 2 cut(s) 643, 1457
NsiI ATGCAT 9 cut(s) 1006, 1131, 1348, 1439, 1467, 1712, 1734, 1838, 1869
OliI CACNNNNGTG 1 cut(s) 859
PagI TCATGA 1 cut(s) 2232
PceI AGGCCT 1 cut(s) 2119
PctI GAATGC 7 cut(s) 1129, 1310, 1346, 1437, 1465, 1689, 1732
PdmI GAANNNNTTC 4 cut(s) 545, 710, 776, 1662
PflMI CCANNNNNTGG 1 cut(s) 679
PkrI GCNGC 7 cut(s) 72, 473, 866, 1511, 1846, 2097, 2100
PleI GAGTC 2 cut(s) 582, 755
PpsI GAGTC 2 cut(s) 582, 755
PpuMI RGGWCCY 1 cut(s) 406
Psp124BI GAGCTC 1 cut(s) 449
Psp1406I AACGTT 2 cut(s) 737, 2125
Psp5II RGGWCCY 1 cut(s) 406
PspN4I GGNNCC 4 cut(s) 107, 407, 796, 1582
PspPI GGNCC 2 cut(s) 406, 975
PspPPI RGGWCCY 1 cut(s) 406
PstI CTGCAG 1 cut(s) 2100
PsuI RGATCY 2 cut(s) 301, 794
RseI CAYNNNNRTG 8 cut(s) 859, 931, 1124, 1351, 1526, 1575, 1862, 1894
SacI GAGCTC 1 cut(s) 449
SatI GCNGC 7 cut(s) 71, 472, 865, 1510, 1845, 2096, 2099
Sau3AI GATC 3 cut(s) 165, 301, 794
Sau96I GGNCC 2 cut(s) 406, 975
SchI GAGTC 2 cut(s) 582, 756
ScrFI CCNGG 4 cut(s) 61, 62, 142, 654
SduI GDGCHC 6 cut(s) 247, 449, 1026, 1331, 1816, 1901
SfaNI GCATC 8 cut(s) 522, 632, 841, 991, 1105, 1719, 1763, 1845
SfcI CTRYAG 1 cut(s) 2096
SinI GGWCC 2 cut(s) 406, 975
SmaI CCCGGG 1 cut(s) 62
SmiI ATTTAAAT 1 cut(s) 1930
SmiMI CAYNNNNRTG 8 cut(s) 859, 931, 1124, 1351, 1526, 1575, 1862, 1894
SmlI CTYRAG 1 cut(s) 829
SmoI CTYRAG 1 cut(s) 829
Sse9I AATT 8 cut(s) 236, 289, 418, 812, 1079, 1762, 2134, 2228
SseBI AGGCCT 1 cut(s) 2119
SsiI CCGC 5 cut(s) 12, 505, 864, 885, 913
SspMI CTAG 2 cut(s) 1481, 2105
SstI GAGCTC 1 cut(s) 449
StuI AGGCCT 1 cut(s) 2119
StyD4I CCNGG 4 cut(s) 59, 60, 140, 652
StyI CCWWGG 5 cut(s) 173, 678, 801, 839, 2186
SwaI ATTTAAAT 1 cut(s) 1930
TaaI ACNGT 2 cut(s) 649, 1326
TaiI ACGT 2 cut(s) 740, 2128
TaqI TCGA 2 cut(s) 756, 770
TaqII GACCGA 1 cut(s) 809
TasI AATT 8 cut(s) 236, 289, 418, 812, 1079, 1762, 2134, 2228
TauI GCSGC 1 cut(s) 867
TseFI GTSAC 2 cut(s) 643, 1457
TseI GCWGC 6 cut(s) 70, 471, 1509, 1844, 2095, 2098
Tsp45I GTSAC 2 cut(s) 643, 1457
TspMI CCCGGG 1 cut(s) 60
Van91I CCANNNNNTGG 1 cut(s) 679
VneI GTGCAC 3 cut(s) 1327, 1812, 1897
VpaK11BI GGWCC 2 cut(s) 406, 975
XapI RAATTY 2 cut(s) 812, 2228
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XmaI CCCGGG 1 cut(s) 60
XmnI GAANNNNTTC 4 cut(s) 545, 710, 776, 1662
XspI CTAG 2 cut(s) 1481, 2105
Zsp2I ATGCAT 9 cut(s) 1006, 1131, 1348, 1439, 1467, 1712, 1734, 1838, 1869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.