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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 679 |
| AciI | CCGC | 5 cut(s) | 12, 505, 864, 885, 913 |
| AclI | AACGTT | 2 cut(s) | 737, 2125 |
| AclWI | GGATC | 4 cut(s) | 173, 309, 789, 802 |
| AcoI | YGGCCR | 3 cut(s) | 36, 316, 871 |
| AcsI | RAATTY | 2 cut(s) | 812, 2228 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 679, 841 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1647, 1679 |
| AleI | CACNNNNGTG | 1 cut(s) | 859 |
| AluBI | AGCT | 5 cut(s) | 348, 447, 892, 1484, 1847 |
| AluI | AGCT | 5 cut(s) | 348, 447, 892, 1484, 1847 |
| Alw21I | GWGCWC | 5 cut(s) | 449, 1026, 1331, 1816, 1901 |
| Alw26I | GTCTC | 3 cut(s) | 136, 319, 1006 |
| Alw44I | GTGCAC | 3 cut(s) | 1327, 1812, 1897 |
| AlwI | GGATC | 4 cut(s) | 173, 309, 789, 802 |
| Ama87I | CYCGRG | 1 cut(s) | 60 |
| AoxI | GGCC | 4 cut(s) | 36, 316, 871, 2117 |
| ApaLI | GTGCAC | 3 cut(s) | 1327, 1812, 1897 |
| ApeKI | GCWGC | 6 cut(s) | 70, 471, 1509, 1844, 2095, 2098 |
| ApoI | RAATTY | 2 cut(s) | 812, 2228 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 797, 829 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 545, 710, 776, 1662 |
| AspS9I | GGNCC | 2 cut(s) | 406, 975 |
| AsuC2I | CCSGG | 4 cut(s) | 61, 62, 142, 654 |
| AsuHPI | GGTGA | 8 cut(s) | 1163, 1267, 1287, 1331, 1437, 1513, 1643, 2070 |
| AvaI | CYCGRG | 1 cut(s) | 60 |
| AvaII | GGWCC | 2 cut(s) | 406, 975 |
| BaeGI | GKGCMC | 4 cut(s) | 247, 1331, 1816, 1901 |
| BalI | TGGCCA | 1 cut(s) | 873 |
| BamHI | GGATCC | 1 cut(s) | 794 |
| BanII | GRGCYC | 1 cut(s) | 449 |
| BbsI | GAAGAC | 2 cut(s) | 548, 713 |
| Bbv12I | GWGCWC | 5 cut(s) | 449, 1026, 1331, 1816, 1901 |
| BbvI | GCAGC | 6 cut(s) | 57, 458, 1521, 1856, 2082, 2110 |
| BccI | CCATC | 9 cut(s) | 121, 226, 327, 739, 1295, 1376, 1384, 1975, 2036 |
| BceAI | ACGGC | 6 cut(s) | 23, 382, 1076, 1560, 1794, 1879 |
| BcnI | CCSGG | 4 cut(s) | 61, 62, 142, 654 |
| BcoDI | GTCTC | 3 cut(s) | 136, 319, 1006 |
| BfaI | CTAG | 2 cut(s) | 1481, 2105 |
| BfmI | CTRYAG | 1 cut(s) | 2096 |
| BisI | GCNGC | 7 cut(s) | 71, 472, 865, 1510, 1845, 2096, 2099 |
| BlsI | GCNGC | 7 cut(s) | 72, 473, 866, 1511, 1846, 2097, 2100 |
| Bme1390I | CCNGG | 4 cut(s) | 61, 62, 142, 654 |
| Bme18I | GGWCC | 2 cut(s) | 406, 975 |
| BmeT110I | CYCGRG | 1 cut(s) | 60 |
| BmgT120I | GGNCC | 2 cut(s) | 406, 975 |
| BmiI | GGNNCC | 4 cut(s) | 107, 407, 796, 1582 |
| BmrFI | CCNGG | 4 cut(s) | 61, 62, 142, 654 |
| BmsI | GCATC | 8 cut(s) | 522, 632, 841, 991, 1105, 1719, 1763, 1845 |
| BpiI | GAAGAC | 2 cut(s) | 548, 713 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 94, 126, 738, 770 |
| BpmI | CTGGAG | 3 cut(s) | 765, 1573, 2203 |
| BpuEI | CTTGAG | 1 cut(s) | 850 |
| BpuMI | CCSGG | 4 cut(s) | 61, 62, 142, 654 |
| BsaI | GGTCTC | 1 cut(s) | 136 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 482, 512 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 679, 841 |
| Bse1I | ACTGG | 2 cut(s) | 748, 2220 |
| Bse3DI | GCAATG | 3 cut(s) | 463, 1570, 1889 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 679, 841 |
| BseMI | GCAATG | 3 cut(s) | 463, 1570, 1889 |
| BseMII | CTCAG | 1 cut(s) | 314 |
| BseNI | ACTGG | 2 cut(s) | 748, 2220 |
| BseRI | GAGGAG | 4 cut(s) | 490, 1573, 1576, 2123 |
| BseSI | GKGCMC | 4 cut(s) | 247, 1331, 1816, 1901 |
| BseXI | GCAGC | 6 cut(s) | 57, 458, 1521, 1856, 2082, 2110 |
| BshFI | GGCC | 4 cut(s) | 38, 318, 873, 2119 |
| BsiHKAI | GWGCWC | 5 cut(s) | 449, 1026, 1331, 1816, 1901 |
| BsiHKCI | CYCGRG | 1 cut(s) | 60 |
| BsiSI | CCGG | 3 cut(s) | 61, 142, 653 |
| BslFI | GGGAC | 1 cut(s) | 550 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 679, 841 |
| BsmAI | GTCTC | 3 cut(s) | 136, 319, 1006 |
| BsmFI | GGGAC | 1 cut(s) | 550 |
| BsmI | GAATGC | 7 cut(s) | 1129, 1310, 1346, 1437, 1465, 1689, 1732 |
| BsnI | GGCC | 4 cut(s) | 38, 318, 873, 2119 |
| Bso31I | GGTCTC | 1 cut(s) | 136 |
| BsoBI | CYCGRG | 1 cut(s) | 60 |
| Bsp1286I | GDGCHC | 6 cut(s) | 247, 449, 1026, 1331, 1816, 1901 |
| Bsp143I | GATC | 3 cut(s) | 165, 301, 794 |
| Bsp19I | CCATGG | 2 cut(s) | 801, 2186 |
| BspACI | CCGC | 5 cut(s) | 12, 505, 864, 885, 913 |
| BspANI | GGCC | 4 cut(s) | 38, 318, 873, 2119 |
| BspCNI | CTCAG | 1 cut(s) | 315 |
| BspHI | TCATGA | 1 cut(s) | 2232 |
| BspLI | GGNNCC | 4 cut(s) | 107, 407, 796, 1582 |
| BspMAI | CTGCAG | 1 cut(s) | 2100 |
| BspPI | GGATC | 4 cut(s) | 173, 309, 789, 802 |
| BspTNI | GGTCTC | 1 cut(s) | 136 |
| BsrDI | GCAATG | 3 cut(s) | 463, 1570, 1889 |
| BsrI | ACTGG | 2 cut(s) | 748, 2220 |
| BssMI | GATC | 3 cut(s) | 165, 301, 794 |
| BssT1I | CCWWGG | 5 cut(s) | 173, 678, 801, 839, 2186 |
| Bst4CI | ACNGT | 2 cut(s) | 649, 1326 |
| Bst6I | CTCTTC | 2 cut(s) | 1954, 2108 |
| BstC8I | GCNNGC | 1 cut(s) | 621 |
| BstDEI | CTNAG | 2 cut(s) | 323, 2168 |
| BstDSI | CCRYGG | 5 cut(s) | 39, 398, 801, 1576, 2186 |
| BstKTI | GATC | 3 cut(s) | 168, 304, 797 |
| BstMAI | GTCTC | 3 cut(s) | 136, 319, 1006 |
| BstMBI | GATC | 3 cut(s) | 165, 301, 794 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 444, 453, 504, 870, 991, 1873 |
| BstSCI | CCNGG | 4 cut(s) | 59, 60, 140, 652 |
| BstSFI | CTRYAG | 1 cut(s) | 2096 |
| BstSLI | GKGCMC | 4 cut(s) | 247, 1331, 1816, 1901 |
| BstV1I | GCAGC | 6 cut(s) | 57, 458, 1521, 1856, 2082, 2110 |
| BstV2I | GAAGAC | 2 cut(s) | 548, 713 |
| BstX2I | RGATCY | 2 cut(s) | 301, 794 |
| BstYI | RGATCY | 2 cut(s) | 301, 794 |
| BsuRI | GGCC | 4 cut(s) | 38, 318, 873, 2119 |
| BtgI | CCRYGG | 5 cut(s) | 39, 398, 801, 1576, 2186 |
| Cac8I | GCNNGC | 1 cut(s) | 621 |
| CciI | TCATGA | 1 cut(s) | 2232 |
| Cfr13I | GGNCC | 2 cut(s) | 406, 975 |
| Cfr9I | CCCGGG | 1 cut(s) | 60 |
| DdeI | CTNAG | 2 cut(s) | 323, 2168 |
| DpnI | GATC | 3 cut(s) | 167, 303, 796 |
| DpnII | GATC | 3 cut(s) | 165, 301, 794 |
| DraI | TTTAAA | 5 cut(s) | 562, 1069, 1384, 1783, 1930 |
| EaeI | YGGCCR | 3 cut(s) | 36, 316, 871 |
| Eam1104I | CTCTTC | 2 cut(s) | 1954, 2108 |
| EarI | CTCTTC | 2 cut(s) | 1954, 2108 |
| EciI | GGCGGA | 1 cut(s) | 27 |
| Ecl136II | GAGCTC | 1 cut(s) | 447 |
| Eco130I | CCWWGG | 5 cut(s) | 173, 678, 801, 839, 2186 |
| Eco147I | AGGCCT | 1 cut(s) | 2119 |
| Eco24I | GRGCYC | 1 cut(s) | 449 |
| Eco31I | GGTCTC | 1 cut(s) | 136 |
| Eco47I | GGWCC | 2 cut(s) | 406, 975 |
| Eco53kI | GAGCTC | 1 cut(s) | 447 |
| Eco88I | CYCGRG | 1 cut(s) | 60 |
| EcoICRI | GAGCTC | 1 cut(s) | 447 |
| EcoO109I | RGGNCCY | 1 cut(s) | 406 |
| EcoRI | GAATTC | 1 cut(s) | 2228 |
| EcoT14I | CCWWGG | 5 cut(s) | 173, 678, 801, 839, 2186 |
| EcoT22I | ATGCAT | 9 cut(s) | 1006, 1131, 1348, 1439, 1467, 1712, 1734, 1838, 1869 |
| EcoT38I | GRGCYC | 1 cut(s) | 449 |
| ErhI | CCWWGG | 5 cut(s) | 173, 678, 801, 839, 2186 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 247, 279 |
| FaqI | GGGAC | 1 cut(s) | 550 |
| FauI | CCCGC | 1 cut(s) | 512 |
| FauNDI | CATATG | 1 cut(s) | 2194 |
| Fnu4HI | GCNGC | 7 cut(s) | 71, 472, 865, 1510, 1845, 2096, 2099 |
| FriOI | GRGCYC | 1 cut(s) | 449 |
| Fsp4HI | GCNGC | 7 cut(s) | 71, 472, 865, 1510, 1845, 2096, 2099 |
| FspBI | CTAG | 2 cut(s) | 1481, 2105 |
| GluI | GCNGC | 7 cut(s) | 71, 472, 865, 1510, 1845, 2096, 2099 |
| GsuI | CTGGAG | 3 cut(s) | 765, 1573, 2203 |
| HaeIII | GGCC | 4 cut(s) | 38, 318, 873, 2119 |
| HapII | CCGG | 3 cut(s) | 61, 142, 653 |
| HincII | GTYRAC | 1 cut(s) | 741 |
| HindII | GTYRAC | 1 cut(s) | 741 |
| HinfI | GANTC | 2 cut(s) | 588, 747 |
| HpaI | GTTAAC | 1 cut(s) | 741 |
| HpaII | CCGG | 3 cut(s) | 61, 142, 653 |
| HphI | GGTGA | 8 cut(s) | 1163, 1267, 1287, 1331, 1437, 1513, 1643, 2070 |
| Hpy166II | GTNNAC | 6 cut(s) | 741, 1329, 1814, 1899, 2150, 2252 |
| Hpy188I | TCNGA | 6 cut(s) | 254, 324, 368, 1415, 1683, 1961 |
| Hpy188III | TCNNGA | 6 cut(s) | 611, 829, 879, 1590, 2139, 2233 |
| Hpy8I | GTNNAC | 6 cut(s) | 741, 1329, 1814, 1899, 2150, 2252 |
| Hpy99I | CGWCG | 1 cut(s) | 821 |
| HpyAV | CCTTC | 8 cut(s) | 249, 322, 355, 433, 556, 721, 787, 1528 |
| HpyCH4III | ACNGT | 2 cut(s) | 649, 1326 |
| HpyCH4IV | ACGT | 2 cut(s) | 737, 2125 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 444, 453, 504, 870, 991, 1873 |
| HpyF3I | CTNAG | 2 cut(s) | 323, 2168 |
| HpySE526I | ACGT | 2 cut(s) | 737, 2125 |
| KspAI | GTTAAC | 1 cut(s) | 741 |
| Kzo9I | GATC | 3 cut(s) | 165, 301, 794 |
| LmnI | GCTCC | 8 cut(s) | 111, 503, 897, 923, 991, 1021, 1159, 1586 |
| LpnPI | CCDG | 9 cut(s) | 74, 155, 666, 729, 1573, 1603, 1886, 1935, 2233 |
| Lsp1109I | GCAGC | 6 cut(s) | 57, 458, 1521, 1856, 2082, 2110 |
| LweI | GCATC | 8 cut(s) | 522, 632, 841, 991, 1105, 1719, 1763, 1845 |
| MaeI | CTAG | 2 cut(s) | 1481, 2105 |
| MaeII | ACGT | 2 cut(s) | 737, 2125 |
| MaeIII | GTNAC | 2 cut(s) | 643, 1457 |
| MalI | GATC | 3 cut(s) | 167, 303, 796 |
| MboI | GATC | 3 cut(s) | 165, 301, 794 |
| MboII | GAAGA | 8 cut(s) | 296, 553, 709, 718, 1630, 1705, 1941, 2125 |
| MfeI | CAATTG | 2 cut(s) | 236, 289 |
| MflI | RGATCY | 2 cut(s) | 301, 794 |
| MhlI | GDGCHC | 6 cut(s) | 247, 449, 1026, 1331, 1816, 1901 |
| MlsI | TGGCCA | 1 cut(s) | 873 |
| MluCI | AATT | 8 cut(s) | 236, 289, 418, 812, 1079, 1762, 2134, 2228 |
| MluNI | TGGCCA | 1 cut(s) | 873 |
| MlyI | GAGTC | 2 cut(s) | 582, 756 |
| MmeI | TCCRAC | 6 cut(s) | 161, 346, 560, 1016, 1339, 1622 |
| Mox20I | TGGCCA | 1 cut(s) | 873 |
| Mph1103I | ATGCAT | 9 cut(s) | 1006, 1131, 1348, 1439, 1467, 1712, 1734, 1838, 1869 |
| MroXI | GAANNNNTTC | 4 cut(s) | 545, 710, 776, 1662 |
| MscI | TGGCCA | 1 cut(s) | 873 |
| MslI | CAYNNNNRTG | 8 cut(s) | 859, 931, 1124, 1351, 1526, 1575, 1862, 1894 |
| Msp20I | TGGCCA | 1 cut(s) | 873 |
| MspI | CCGG | 3 cut(s) | 61, 142, 653 |
| MspR9I | CCNGG | 4 cut(s) | 61, 62, 142, 654 |
| MunI | CAATTG | 2 cut(s) | 236, 289 |
| Mva1269I | GAATGC | 7 cut(s) | 1129, 1310, 1346, 1437, 1465, 1689, 1732 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 444, 453, 504, 870, 991, 1873 |
| NciI | CCSGG | 4 cut(s) | 61, 62, 142, 654 |
| NcoI | CCATGG | 2 cut(s) | 801, 2186 |
| NdeI | CATATG | 1 cut(s) | 2194 |
| NdeII | GATC | 3 cut(s) | 165, 301, 794 |
| NlaIV | GGNNCC | 4 cut(s) | 107, 407, 796, 1582 |
| NmuCI | GTSAC | 2 cut(s) | 643, 1457 |
| NsiI | ATGCAT | 9 cut(s) | 1006, 1131, 1348, 1439, 1467, 1712, 1734, 1838, 1869 |
| OliI | CACNNNNGTG | 1 cut(s) | 859 |
| PagI | TCATGA | 1 cut(s) | 2232 |
| PceI | AGGCCT | 1 cut(s) | 2119 |
| PctI | GAATGC | 7 cut(s) | 1129, 1310, 1346, 1437, 1465, 1689, 1732 |
| PdmI | GAANNNNTTC | 4 cut(s) | 545, 710, 776, 1662 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 679 |
| PkrI | GCNGC | 7 cut(s) | 72, 473, 866, 1511, 1846, 2097, 2100 |
| PleI | GAGTC | 2 cut(s) | 582, 755 |
| PpsI | GAGTC | 2 cut(s) | 582, 755 |
| PpuMI | RGGWCCY | 1 cut(s) | 406 |
| Psp124BI | GAGCTC | 1 cut(s) | 449 |
| Psp1406I | AACGTT | 2 cut(s) | 737, 2125 |
| Psp5II | RGGWCCY | 1 cut(s) | 406 |
| PspN4I | GGNNCC | 4 cut(s) | 107, 407, 796, 1582 |
| PspPI | GGNCC | 2 cut(s) | 406, 975 |
| PspPPI | RGGWCCY | 1 cut(s) | 406 |
| PstI | CTGCAG | 1 cut(s) | 2100 |
| PsuI | RGATCY | 2 cut(s) | 301, 794 |
| RseI | CAYNNNNRTG | 8 cut(s) | 859, 931, 1124, 1351, 1526, 1575, 1862, 1894 |
| SacI | GAGCTC | 1 cut(s) | 449 |
| SatI | GCNGC | 7 cut(s) | 71, 472, 865, 1510, 1845, 2096, 2099 |
| Sau3AI | GATC | 3 cut(s) | 165, 301, 794 |
| Sau96I | GGNCC | 2 cut(s) | 406, 975 |
| SchI | GAGTC | 2 cut(s) | 582, 756 |
| ScrFI | CCNGG | 4 cut(s) | 61, 62, 142, 654 |
| SduI | GDGCHC | 6 cut(s) | 247, 449, 1026, 1331, 1816, 1901 |
| SfaNI | GCATC | 8 cut(s) | 522, 632, 841, 991, 1105, 1719, 1763, 1845 |
| SfcI | CTRYAG | 1 cut(s) | 2096 |
| SinI | GGWCC | 2 cut(s) | 406, 975 |
| SmaI | CCCGGG | 1 cut(s) | 62 |
| SmiI | ATTTAAAT | 1 cut(s) | 1930 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 859, 931, 1124, 1351, 1526, 1575, 1862, 1894 |
| SmlI | CTYRAG | 1 cut(s) | 829 |
| SmoI | CTYRAG | 1 cut(s) | 829 |
| Sse9I | AATT | 8 cut(s) | 236, 289, 418, 812, 1079, 1762, 2134, 2228 |
| SseBI | AGGCCT | 1 cut(s) | 2119 |
| SsiI | CCGC | 5 cut(s) | 12, 505, 864, 885, 913 |
| SspMI | CTAG | 2 cut(s) | 1481, 2105 |
| SstI | GAGCTC | 1 cut(s) | 449 |
| StuI | AGGCCT | 1 cut(s) | 2119 |
| StyD4I | CCNGG | 4 cut(s) | 59, 60, 140, 652 |
| StyI | CCWWGG | 5 cut(s) | 173, 678, 801, 839, 2186 |
| SwaI | ATTTAAAT | 1 cut(s) | 1930 |
| TaaI | ACNGT | 2 cut(s) | 649, 1326 |
| TaiI | ACGT | 2 cut(s) | 740, 2128 |
| TaqI | TCGA | 2 cut(s) | 756, 770 |
| TaqII | GACCGA | 1 cut(s) | 809 |
| TasI | AATT | 8 cut(s) | 236, 289, 418, 812, 1079, 1762, 2134, 2228 |
| TauI | GCSGC | 1 cut(s) | 867 |
| TseFI | GTSAC | 2 cut(s) | 643, 1457 |
| TseI | GCWGC | 6 cut(s) | 70, 471, 1509, 1844, 2095, 2098 |
| Tsp45I | GTSAC | 2 cut(s) | 643, 1457 |
| TspMI | CCCGGG | 1 cut(s) | 60 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 679 |
| VneI | GTGCAC | 3 cut(s) | 1327, 1812, 1897 |
| VpaK11BI | GGWCC | 2 cut(s) | 406, 975 |
| XapI | RAATTY | 2 cut(s) | 812, 2228 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 120 |
| XmaI | CCCGGG | 1 cut(s) | 60 |
| XmnI | GAANNNNTTC | 4 cut(s) | 545, 710, 776, 1662 |
| XspI | CTAG | 2 cut(s) | 1481, 2105 |
| Zsp2I | ATGCAT | 9 cut(s) | 1006, 1131, 1348, 1439, 1467, 1712, 1734, 1838, 1869 |