Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001044

Physical Location & Seq

Genomic Coordinates Forward (+)

24200318 .. 24201382

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g28320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGACTTTTGATGTCGGAAAGAACTTCTCTAAGAAGGCTCGCTTCATACTCTCCCATGATGTGACAGTTCCGGGAGCCAACTCATACAACCAATCCTTGGCCTTCTCCAACAAAGAAAAAGGAAAAGCCTTCATCTTTAATATGTTGTTGTCCACGTTCACCGGTGTCATACTTGAGCATACGACTTCGAACTCCTTTAAATGCTTATTGGGATCCTCCATTGATAACCCATGGAACTTGGGGGCTGCCCTAGGGTATTGGATGCAAAGAAGGGCTGCATTGGCCAAACCCGAGGCAGAAAGCTCCTTGATGGTTCGATTGTCTGCTGCCATAGTTGGTACTTCCTCTTCAAACCTTGCCGTGGCCTCCTCTTCAACCTCAATTTCTTGCTCTTCTAATTCAGGTTCGGGACTAGGAGGATTAGACTCTTGCAATTTCTTTTTCCTTCTCAAAGTCTTCTCGAAATCAACGTCAAAGTCGAAGATATGCTCACGAACATGTTGTGATAACCAACTTAATAGACTCGGCACAAGTAAGGAAATAATGTGCCTATACACGGCACAAAAACAAAACACACACACACGGTCCCCGGCAACGGCGCCAAAATTTGATGTGAAAATTATGTTGACACACAAATTAAACCCTATTTGTGACAATTGTAGTAATGATGTAAGTAGGGATCGTTCTAACCGGGGAGTAACTAGGGACTCTAACAAGACTACTATGACTCAAAACAGATTTGAAACACTCAAAACTTGGACGAATTTGGAAGTGTTTGTGACTCCAAATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

28.88

Weight (kDa)

9.56

Isoelectric Point (pI)

30.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001044)

Species	Orthologous Gene IDs
malus_domestica	MD00G1199800.v1.1 MD12G1009800.v1.1
pyrus_communis	pycom01g00360 pycom01g00370 pycom01g01360 pycom01g01490 pycom01g01720 pycom01g01940 pycom01g03060 pycom01g03070 pycom01g03730 pycom01g04350 pycom04g07860 pycom1128g00090 pycom11g16010 pycom12409g00010 pycom12420g00090 pycom12424g00140 pycom12426g00050 pycom12426g00220 pycom12426g00260 pycom12426g00340 pycom12426g00380 pycom12426g00390 pycom12426g00590 pycom12480g00050 pycom12529g00020 pycom12561g00060 pycom1256g00150 pycom1256g00260 pycom12659g00120 pycom12661g00140 pycom12g09700 pycom1341g00110 pycom13g24360 pycom13g25370 pycom13g25380 pycom13g25420 pycom13g25460 pycom13g25840 pycom13g26320 pycom13g28310 pycom13g28320 pycom1654g00080 pycom1654g00130 pycom1654g00140 pycom17g16570 pycom17g16660 pycom17g18490 pycom2238g00030 pycom2246g00120 pycom436g00480 pycom436g00510 pycom576g00010 pycom57g00060 pycom808g00560 pycom808g00650 pycom992g00010
rosa_chinensis	RchiOBHm_Chr0c04g0497971 RchiOBHm_Chr2g0129591 RchiOBHm_Chr7g0215791

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	598
AccB7I	CCANNNNNTGG	1 cut(s)	97
AclWI	GGATC	3 cut(s)	207, 220, 687
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	2 cut(s)	605, 763
AcyI	GRCGYC	1 cut(s)	599
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	4 cut(s)	97, 361, 556, 595
AflIII	ACRYGT	1 cut(s)	497
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	351, 375, 743
AluBI	AGCT	1 cut(s)	303
AluI	AGCT	1 cut(s)	303
AlwI	GGATC	3 cut(s)	207, 220, 687
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	3 cut(s)	99, 282, 363
ApeKI	GCWGC	3 cut(s)	245, 275, 326
ApoI	RAATTY	2 cut(s)	605, 763
ArsI	GACNNNNNNTTYG	2 cut(s)	455, 487
AsiGI	ACCGGT	1 cut(s)	161
AspA2I	CCTAGG	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	1 cut(s)	585
AsuC2I	CCSGG	3 cut(s)	72, 590, 692
AsuHPI	GGTGA	1 cut(s)	151
AsuII	TTCGAA	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	585
AvrII	CCTAGG	1 cut(s)	250
BalI	TGGCCA	1 cut(s)	284
BamHI	GGATCC	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	598
BarI	GAAGNNNNNNTAC	2 cut(s)	331, 363
BbsI	GAAGAC	1 cut(s)	448
BbvI	GCAGC	3 cut(s)	232, 262, 313
BccI	CCATC	1 cut(s)	304
BceAI	ACGGC	3 cut(s)	344, 573, 612
BcnI	CCSGG	3 cut(s)	72, 590, 692
BfaI	CTAG	3 cut(s)	251, 413, 702
BfoI	RGCGCY	1 cut(s)	602
BisI	GCNGC	3 cut(s)	246, 276, 327
BlnI	CCTAGG	1 cut(s)	250
BlsI	GCNGC	3 cut(s)	247, 277, 328
Bme1390I	CCNGG	3 cut(s)	72, 590, 692
Bme18I	GGWCC	1 cut(s)	585
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	585
BmiI	GGNNCC	4 cut(s)	76, 214, 587, 600
BmrFI	CCNGG	3 cut(s)	72, 590, 692
BmsI	GCATC	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	448
Bpu14I	TTCGAA	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	3 cut(s)	72, 590, 692
BsaHI	GRCGYC	1 cut(s)	599
BsaJI	CCNNGG	7 cut(s)	96, 230, 250, 291, 360, 588, 691
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 361, 556, 595
Bse118I	RCCGGY	1 cut(s)	161
BseDI	CCNNGG	7 cut(s)	96, 230, 250, 291, 360, 588, 691
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	4 cut(s)	97, 361, 556, 595
BseRI	GAGGAG	1 cut(s)	358
BseXI	GCAGC	3 cut(s)	232, 262, 313
BshFI	GGCC	3 cut(s)	101, 284, 365
BshNI	GGYRCC	1 cut(s)	598
BshTI	ACCGGT	1 cut(s)	161
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	4 cut(s)	71, 162, 590, 691
BslFI	GGGAC	3 cut(s)	423, 571, 719
BslI	CCNNNNNNNGG	4 cut(s)	97, 361, 556, 595
BsmFI	GGGAC	3 cut(s)	423, 571, 719
BsnI	GGCC	3 cut(s)	101, 284, 365
BsoBI	CYCGRG	1 cut(s)	290
Bsp119I	TTCGAA	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	212, 679
Bsp19I	CCATGG	1 cut(s)	230
BspANI	GGCC	3 cut(s)	101, 284, 365
BspLI	GGNNCC	4 cut(s)	76, 214, 587, 600
BspPI	GGATC	3 cut(s)	207, 220, 687
BspQI	GCTCTTC	1 cut(s)	397
BspT104I	TTCGAA	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	598
BsrFI	RCCGGY	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	7 cut(s)	96, 230, 250, 291, 360, 588, 691
BssMI	GATC	2 cut(s)	212, 679
BssNI	GRCGYC	1 cut(s)	599
BssT1I	CCWWGG	3 cut(s)	96, 230, 250
Bst4CI	ACNGT	2 cut(s)	67, 585
Bst6I	CTCTTC	3 cut(s)	352, 376, 397
BstACI	GRCGYC	1 cut(s)	599
BstBI	TTCGAA	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	30
BstDSI	CCRYGG	2 cut(s)	230, 360
BstF5I	GGATG	1 cut(s)	267
BstH2I	RGCGCY	1 cut(s)	602
BstHHI	GCGC	1 cut(s)	601
BstKTI	GATC	2 cut(s)	215, 682
BstMBI	GATC	2 cut(s)	212, 679
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	501
BstSCI	CCNGG	3 cut(s)	70, 588, 690
BstV1I	GCAGC	3 cut(s)	232, 262, 313
BstV2I	GAAGAC	1 cut(s)	448
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	3 cut(s)	101, 284, 365
BtgI	CCRYGG	2 cut(s)	230, 360
BtsCI	GGATG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	40
CfoI	GCGC	1 cut(s)	601
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	585
Csp6I	GTAC	1 cut(s)	339
CspAI	ACCGGT	1 cut(s)	161
CviAII	CATG	3 cut(s)	56, 231, 498
CviJI	RGCY	9 cut(s)	38, 77, 101, 128, 245, 275, 284, 303, 365
CviKI_1	RGCY	9 cut(s)	38, 77, 101, 128, 245, 275, 284, 303, 365
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	1 cut(s)	30
DinI	GGCGCC	1 cut(s)	600
DpnI	GATC	2 cut(s)	214, 681
DpnII	GATC	2 cut(s)	212, 679
DraI	TTTAAA	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	3 cut(s)	352, 376, 397
EarI	CTCTTC	3 cut(s)	352, 376, 397
Eco130I	CCWWGG	3 cut(s)	96, 230, 250
Eco47I	GGWCC	1 cut(s)	585
Eco88I	CYCGRG	1 cut(s)	290
EcoT14I	CCWWGG	3 cut(s)	96, 230, 250
EgeI	GGCGCC	1 cut(s)	600
EheI	GGCGCC	1 cut(s)	600
ErhI	CCWWGG	3 cut(s)	96, 230, 250
FaeI	CATG	3 cut(s)	59, 234, 501
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	3 cut(s)	423, 571, 719
FatI	CATG	3 cut(s)	55, 230, 497
Fnu4HI	GCNGC	3 cut(s)	246, 276, 327
FokI	GGATG	1 cut(s)	274
Fsp4HI	GCNGC	3 cut(s)	246, 276, 327
FspBI	CTAG	3 cut(s)	251, 413, 702
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	3 cut(s)	246, 276, 327
HaeII	RGCGCY	1 cut(s)	602
HaeIII	GGCC	3 cut(s)	101, 284, 365
HapII	CCGG	4 cut(s)	71, 162, 590, 691
HhaI	GCGC	1 cut(s)	601
Hin1I	GRCGYC	1 cut(s)	599
Hin1II	CATG	3 cut(s)	59, 234, 501
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HinfI	GANTC	5 cut(s)	425, 522, 707, 727, 781
HpaII	CCGG	4 cut(s)	71, 162, 590, 691
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	3 cut(s)	153, 159, 627
Hpy188I	TCNGA	1 cut(s)	17
Hpy188III	TCNNGA	3 cut(s)	408, 460, 492
Hpy8I	GTNNAC	3 cut(s)	153, 159, 627
HpyAV	CCTTC	5 cut(s)	28, 112, 139, 264, 455
HpyCH4III	ACNGT	2 cut(s)	67, 585
HpyCH4IV	ACGT	2 cut(s)	155, 470
HpyCH4V	TGCA	3 cut(s)	265, 278, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	2 cut(s)	155, 470
Hsp92I	GRCGYC	1 cut(s)	599
Hsp92II	CATG	3 cut(s)	59, 234, 501
HspAI	GCGC	1 cut(s)	599
KasI	GGCGCC	1 cut(s)	598
Kzo9I	GATC	2 cut(s)	212, 679
LguI	GCTCTTC	1 cut(s)	397
LmnI	GCTCC	2 cut(s)	74, 308
LpnPI	CCDG	5 cut(s)	84, 175, 387, 603, 704
Lsp1109I	GCAGC	3 cut(s)	232, 262, 313
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	3 cut(s)	251, 413, 702
MaeII	ACGT	2 cut(s)	155, 470
MaeIII	GTNAC	4 cut(s)	61, 650, 697, 778
MalI	GATC	2 cut(s)	214, 681
MboI	GATC	2 cut(s)	212, 679
MboII	GAAGA	5 cut(s)	339, 363, 384, 448, 493
MfeI	CAATTG	1 cut(s)	655
MflI	RGATCY	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	8 cut(s)	381, 397, 433, 605, 618, 635, 655, 763
MluNI	TGGCCA	1 cut(s)	284
Mly113I	GGCGCC	1 cut(s)	599
MlyI	GAGTC	5 cut(s)	419, 516, 701, 721, 775
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	7 cut(s)	226, 286, 355, 376, 379, 388, 410
Mox20I	TGGCCA	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	5 cut(s)	138, 198, 516, 638, 793
MslI	CAYNNNNRTG	1 cut(s)	496
Msp20I	TGGCCA	1 cut(s)	284
MspI	CCGG	4 cut(s)	71, 162, 590, 691
MspR9I	CCNGG	3 cut(s)	72, 590, 692
MunI	CAATTG	1 cut(s)	655
MwoI	GCNNNNNNNGC	1 cut(s)	281
NarI	GGCGCC	1 cut(s)	599
NciI	CCSGG	3 cut(s)	72, 590, 692
NcoI	CCATGG	1 cut(s)	230
NdeII	GATC	2 cut(s)	212, 679
NlaIII	CATG	3 cut(s)	59, 234, 501
NlaIV	GGNNCC	4 cut(s)	76, 214, 587, 600
NmeAIII	GCCGAG	1 cut(s)	504
NmuCI	GTSAC	3 cut(s)	61, 650, 778
NspI	RCATGY	1 cut(s)	501
NspV	TTCGAA	1 cut(s)	188
PciI	ACATGT	1 cut(s)	497
PciSI	GCTCTTC	1 cut(s)	397
PcsI	WCGNNNNNNNCGW	2 cut(s)	467, 476
PflMI	CCANNNNNTGG	1 cut(s)	97
PfoI	TCCNGGA	1 cut(s)	70
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	3 cut(s)	247, 277, 328
PleI	GAGTC	5 cut(s)	419, 516, 701, 721, 775
PluTI	GGCGCC	1 cut(s)	602
PpsI	GAGTC	5 cut(s)	419, 516, 701, 721, 775
PscI	ACATGT	1 cut(s)	497
PspN4I	GGNNCC	4 cut(s)	76, 214, 587, 600
PspPI	GGNCC	1 cut(s)	585
PsrI	GAACNNNNNNTAC	2 cut(s)	667, 699
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
RseI	CAYNNNNRTG	1 cut(s)	496
SapI	GCTCTTC	1 cut(s)	397
SaqAI	TTAA	5 cut(s)	138, 198, 516, 638, 793
SatI	GCNGC	3 cut(s)	246, 276, 327
Sau3AI	GATC	2 cut(s)	212, 679
Sau96I	GGNCC	1 cut(s)	585
SchI	GAGTC	5 cut(s)	419, 516, 701, 721, 775
ScrFI	CCNGG	3 cut(s)	72, 590, 692
SetI	ASST	6 cut(s)	158, 305, 357, 380, 406, 473
SfaNI	GCATC	1 cut(s)	252
SfoI	GGCGCC	1 cut(s)	600
SfuI	TTCGAA	1 cut(s)	188
SgrAI	CRCCGGYG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	585
SmiMI	CAYNNNNRTG	1 cut(s)	496
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	8 cut(s)	381, 397, 433, 605, 618, 635, 655, 763
SspDI	GGCGCC	1 cut(s)	598
SspMI	CTAG	3 cut(s)	251, 413, 702
StyD4I	CCNGG	3 cut(s)	70, 588, 690
StyI	CCWWGG	3 cut(s)	96, 230, 250
TaaI	ACNGT	2 cut(s)	67, 585
TaiI	ACGT	2 cut(s)	158, 473
TaqI	TCGA	4 cut(s)	188, 316, 461, 479
TasI	AATT	8 cut(s)	381, 397, 433, 605, 618, 635, 655, 763
Tru1I	TTAA	5 cut(s)	138, 198, 516, 638, 793
Tru9I	TTAA	5 cut(s)	138, 198, 516, 638, 793
TseFI	GTSAC	3 cut(s)	61, 650, 778
TseI	GCWGC	3 cut(s)	245, 275, 326
Tsp45I	GTSAC	3 cut(s)	61, 650, 778
TspDTI	ATGAA	2 cut(s)	34, 121
Van91I	CCANNNNNTGG	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	585
XapI	RAATTY	2 cut(s)	605, 763
XceI	RCATGY	1 cut(s)	501
XmaJI	CCTAGG	1 cut(s)	250
XspI	CTAG	3 cut(s)	251, 413, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.