RchiOBHm_Chr7g0215791

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001044
Physical Location & Seq
Reverse (-)
33462268 .. 33462912
645 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19306

Sequence Viewer

Length: 303 bp
ATGGCTCTCTTAATACTCCGATCCGCAAGTTGCAAGAATATAGGAGTAGCTTTAATAGGTCCAAGGTCAAGTTTCCGGAAAGTCTCAAAAGAAATAATGTTAACACTTGAACCAAGGTCCATCAAAGCTCTATCAAAGACTTTCTCACCAATAGTGCAAGAGATATTAAAGCTCCCCGGATCCTTGAGTTTTGGGGGAATCCGTCTTTGCAAGATAGCACTAACCTCCTCACAAATCTCGAACCGCTCATCATTCTTTATCTTCCTCTTATGGGTGCACAAGTCCTTTAGAAATTTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.11

Weight (kDa)

11.37

Isoelectric Point (pI)

62.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 246
AccIII TCCGGA 1 cut(s) 75
AciI CCGC 2 cut(s) 24, 244
AclWI GGATC 3 cut(s) 15, 174, 187
AcsI RAATTY 1 cut(s) 292
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 1 cut(s) 110
AluBI AGCT 3 cut(s) 50, 128, 172
AluI AGCT 3 cut(s) 50, 128, 172
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 88
Alw44I GTGCAC 1 cut(s) 275
AlwI GGATC 3 cut(s) 15, 174, 187
Aor13HI TCCGGA 1 cut(s) 75
ApaLI GTGCAC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 292
AspS9I GGNCC 2 cut(s) 59, 117
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 138
AvaII GGWCC 2 cut(s) 59, 117
BaeGI GKGCMC 1 cut(s) 279
BamHI GGATCC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 279
BccI CCATC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 177
Bme18I GGWCC 2 cut(s) 59, 117
BmgT120I GGNCC 2 cut(s) 59, 117
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 177
BsaJI CCNNGG 3 cut(s) 62, 113, 175
BsaWI WCCGGW 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 271
BseAI TCCGGA 1 cut(s) 75
BseDI CCNNGG 3 cut(s) 62, 113, 175
BseLI CCNNNNNNNGG 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 279
BsiSI CCGG 2 cut(s) 76, 177
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 279
Bsp13I TCCGGA 1 cut(s) 75
Bsp143I GATC 2 cut(s) 20, 179
BspACI CCGC 2 cut(s) 24, 244
BspEI TCCGGA 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 181
BspPI GGATC 3 cut(s) 15, 174, 187
BsrBI CCGCTC 1 cut(s) 246
BssECI CCNNGG 3 cut(s) 62, 113, 175
BssMI GATC 2 cut(s) 20, 179
BssT1I CCWWGG 2 cut(s) 62, 113
BstKTI GATC 2 cut(s) 23, 182
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 2 cut(s) 20, 179
BstSCI CCNGG 1 cut(s) 175
BstSLI GKGCMC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 59, 117
CviJI RGCY 4 cut(s) 5, 50, 128, 172
CviKI_1 RGCY 4 cut(s) 5, 50, 128, 172
DpnI GATC 2 cut(s) 22, 181
DpnII GATC 2 cut(s) 20, 179
Eco130I CCWWGG 2 cut(s) 62, 113
Eco47I GGWCC 2 cut(s) 59, 117
EcoT14I CCWWGG 2 cut(s) 62, 113
ErhI CCWWGG 2 cut(s) 62, 113
FaiI YATR 3 cut(s) 41, 271, 301
HapII CCGG 2 cut(s) 76, 177
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 1 cut(s) 198
HpaI GTTAAC 1 cut(s) 102
HpaII CCGG 2 cut(s) 76, 177
HphI GGTGA 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 102, 277
Hpy188I TCNGA 1 cut(s) 20
Hpy188III TCNNGA 2 cut(s) 76, 238
Hpy8I GTNNAC 2 cut(s) 102, 277
HpyCH4V TGCA 5 cut(s) 33, 157, 210, 277, 299
Kpn2I TCCGGA 1 cut(s) 75
KspAI GTTAAC 1 cut(s) 102
Kzo9I GATC 2 cut(s) 20, 179
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 2 cut(s) 89, 190
MalI GATC 2 cut(s) 22, 181
MbiI CCGCTC 1 cut(s) 246
MboI GATC 2 cut(s) 20, 179
MboII GAAGA 1 cut(s) 253
MflI RGATCY 1 cut(s) 179
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 1 cut(s) 292
MnlI CCTC 3 cut(s) 235, 238, 275
MroI TCCGGA 1 cut(s) 75
MseI TTAA 4 cut(s) 11, 53, 101, 167
MspI CCGG 2 cut(s) 76, 177
MspR9I CCNGG 1 cut(s) 177
NciI CCSGG 1 cut(s) 177
NdeII GATC 2 cut(s) 20, 179
NlaIV GGNNCC 1 cut(s) 181
PfeI GAWTC 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 2 cut(s) 59, 117
PsuI RGATCY 1 cut(s) 179
SaqAI TTAA 4 cut(s) 11, 53, 101, 167
Sau3AI GATC 2 cut(s) 20, 179
Sau96I GGNCC 2 cut(s) 59, 117
ScrFI CCNGG 1 cut(s) 177
SduI GDGCHC 1 cut(s) 279
SetI ASST 7 cut(s) 52, 61, 68, 119, 130, 174, 227
SinI GGWCC 2 cut(s) 59, 117
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 1 cut(s) 292
SsiI CCGC 2 cut(s) 24, 244
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 2 cut(s) 62, 113
TaqI TCGA 1 cut(s) 239
TasI AATT 1 cut(s) 292
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 4 cut(s) 11, 53, 101, 167
Tru9I TTAA 4 cut(s) 11, 53, 101, 167
TspGWI ACGGA 1 cut(s) 191
VneI GTGCAC 1 cut(s) 275
VpaK11BI GGWCC 2 cut(s) 59, 117
XapI RAATTY 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.