pycom57g00060

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000057
Physical Location & Seq
Forward (+)
107115 .. 107480
366 bp
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UTR
Exon/CDS
Intron
pycom57g00060.1

Sequence Viewer

Length: 366 bp
ATGTTCAAAACGATTATGTCCAATTACACAAGGAATCGTGAAACTACCGGGGTCTTTGCACTTGGTAGGCAGTTTACGTTGCAAAACAGCGGACACATTCTCGCTTACCTTCACTACCTCTTTGTTTGCCCTCTTCTCTTTGTATTGCATAGGTCCTTGAGGAATTTAGCATACTTTGGAACCTGTTTGATTGCATCGAGAAGCGGTATGTTCACTTGCACCTTCCGGAACGTTTCAAGAATGTCCTTCTCGCTTTCTTCCTTTTTTTCTTGCATGAACCTGCGAGGAAAAGGTACATTGGGCAGATTAGGACGTGAAGTACATGAATTTGAACTTAAATTACCTGATTTGGCCGAGTTAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.83

Weight (kDa)

9.95

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 288
AccIII TCCGGA 1 cut(s) 225
AciI CCGC 2 cut(s) 90, 204
AclI AACGTT 1 cut(s) 231
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 2 cut(s) 163, 326
AfaI GTAC 2 cut(s) 295, 321
AfiI CCNNNNNNNGG 1 cut(s) 360
AgsI TTSAA 3 cut(s) 7, 237, 332
AjiI CACGTC 1 cut(s) 314
Aor13HI TCCGGA 1 cut(s) 225
AoxI GGCC 1 cut(s) 351
ApoI RAATTY 2 cut(s) 163, 326
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 49
AvaII GGWCC 1 cut(s) 153
BcnI CCSGG 1 cut(s) 49
BfuAI ACCTGC 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 49
BmsI GCATC 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 360
BseAI TCCGGA 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 360
BshFI GGCC 1 cut(s) 353
BsiSI CCGG 2 cut(s) 48, 226
BslI CCNNNNNNNGG 1 cut(s) 360
BsnI GGCC 1 cut(s) 353
Bsp13I TCCGGA 1 cut(s) 225
BspACI CCGC 2 cut(s) 90, 204
BspANI GGCC 1 cut(s) 353
BspEI TCCGGA 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 181
BspMI ACCTGC 1 cut(s) 288
BssECI CCNNGG 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 47
BsuRI GGCC 1 cut(s) 353
BtrI CACGTC 1 cut(s) 314
BveI ACCTGC 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 2 cut(s) 294, 320
CviAII CATG 2 cut(s) 274, 323
CviJI RGCY 1 cut(s) 353
CviKI_1 RGCY 1 cut(s) 353
CviQI GTAC 2 cut(s) 294, 320
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 153
FaeI CATG 2 cut(s) 277, 326
FaiI YATR 6 cut(s) 17, 150, 172, 209, 275, 324
FatI CATG 2 cut(s) 273, 322
HaeIII GGCC 1 cut(s) 353
HapII CCGG 2 cut(s) 48, 226
Hin1II CATG 2 cut(s) 277, 326
HinfI GANTC 1 cut(s) 34
HpaII CCGG 2 cut(s) 48, 226
Hpy166II GTNNAC 2 cut(s) 75, 213
Hpy188III TCNNGA 4 cut(s) 38, 198, 226, 237
Hpy8I GTNNAC 2 cut(s) 75, 213
HpyAV CCTTC 3 cut(s) 119, 232, 256
HpyCH4IV ACGT 3 cut(s) 77, 231, 313
HpyCH4V TGCA 6 cut(s) 59, 82, 148, 194, 219, 273
HpySE526I ACGT 3 cut(s) 77, 231, 313
Hsp92II CATG 2 cut(s) 277, 326
Kpn2I TCCGGA 1 cut(s) 225
LpnPI CCDG 5 cut(s) 61, 196, 239, 293, 357
LweI GCATC 1 cut(s) 203
MaeII ACGT 3 cut(s) 77, 231, 313
MboII GAAGA 2 cut(s) 125, 249
MluCI AATT 4 cut(s) 22, 163, 326, 338
MnlI CCTC 4 cut(s) 128, 141, 153, 278
MroI TCCGGA 1 cut(s) 225
MseI TTAA 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 2 cut(s) 48, 226
MspR9I CCNGG 1 cut(s) 49
NciI CCSGG 1 cut(s) 49
NlaIII CATG 2 cut(s) 277, 326
NlaIV GGNNCC 1 cut(s) 181
PfeI GAWTC 1 cut(s) 34
PpuMI RGGWCCY 1 cut(s) 153
Psp1406I AACGTT 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
PsrI GAACNNNNNNTAC 2 cut(s) 324, 356
RsaI GTAC 2 cut(s) 295, 321
RsaNI GTAC 2 cut(s) 294, 320
SaqAI TTAA 1 cut(s) 336
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 49
SfaNI GCATC 1 cut(s) 203
SinI GGWCC 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 4 cut(s) 22, 163, 326, 338
SsiI CCGC 2 cut(s) 90, 204
StyD4I CCNGG 1 cut(s) 47
TaiI ACGT 3 cut(s) 80, 234, 316
TaqI TCGA 1 cut(s) 197
TasI AATT 4 cut(s) 22, 163, 326, 338
TatI WGTACW 1 cut(s) 319
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TspDTI ATGAA 2 cut(s) 290, 339
VpaK11BI GGWCC 1 cut(s) 153
XapI RAATTY 2 cut(s) 163, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.