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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1568 |
| AarI | CACCTGC | 1 cut(s) | 319 |
| Acc36I | ACCTGC | 1 cut(s) | 319 |
| Acc65I | GGTACC | 1 cut(s) | 790 |
| AccB1I | GGYRCC | 2 cut(s) | 790, 2606 |
| AccI | GTMKAC | 4 cut(s) | 63, 379, 1588, 3271 |
| AccII | CGCG | 1 cut(s) | 1531 |
| AciI | CCGC | 1 cut(s) | 2144 |
| AclWI | GGATC | 7 cut(s) | 218, 231, 1034, 1926, 2501, 2739, 2752 |
| AcsI | RAATTY | 9 cut(s) | 741, 869, 1201, 1644, 2554, 2722, 2998, 3328, 3601 |
| AfaI | GTAC | 3 cut(s) | 792, 1217, 1504 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 638 |
| AflII | CTTAAG | 1 cut(s) | 2728 |
| AflIII | ACRYGT | 5 cut(s) | 875, 1591, 2191, 3216, 3274 |
| AhlI | ACTAGT | 1 cut(s) | 206 |
| AjnI | CCWGG | 2 cut(s) | 2602, 3167 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2385, 2417, 2990, 3022 |
| AluBI | AGCT | 9 cut(s) | 99, 326, 420, 602, 679, 3473, 3525, 3641, 3738 |
| AluI | AGCT | 9 cut(s) | 99, 326, 420, 602, 679, 3473, 3525, 3641, 3738 |
| Alw21I | GWGCWC | 1 cut(s) | 109 |
| Alw26I | GTCTC | 5 cut(s) | 145, 241, 951, 2428, 3612 |
| Alw44I | GTGCAC | 1 cut(s) | 105 |
| AlwI | GGATC | 7 cut(s) | 218, 231, 1034, 1926, 2501, 2739, 2752 |
| Ama87I | CYCGRG | 2 cut(s) | 1837, 2705 |
| AoxI | GGCC | 2 cut(s) | 1342, 2980 |
| ApaLI | GTGCAC | 1 cut(s) | 105 |
| ApoI | RAATTY | 9 cut(s) | 741, 869, 1201, 1644, 2554, 2722, 2998, 3328, 3601 |
| AseI | ATTAAT | 1 cut(s) | 572 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2555 |
| Asp718I | GGTACC | 1 cut(s) | 790 |
| AspS9I | GGNCC | 3 cut(s) | 1324, 1343, 2981 |
| AsuHPI | GGTGA | 3 cut(s) | 1685, 2058, 3395 |
| AvaI | CYCGRG | 2 cut(s) | 1837, 2705 |
| AvaII | GGWCC | 1 cut(s) | 1324 |
| AxyI | CCTNAGG | 4 cut(s) | 1450, 1694, 1787, 3405 |
| BaeGI | GKGCMC | 2 cut(s) | 109, 1245 |
| BamHI | GGATCC | 2 cut(s) | 223, 2744 |
| BanI | GGYRCC | 2 cut(s) | 790, 2606 |
| BbsI | GAAGAC | 1 cut(s) | 3094 |
| Bbv12I | GWGCWC | 1 cut(s) | 109 |
| BccI | CCATC | 5 cut(s) | 65, 520, 1978, 2041, 3588 |
| BceAI | ACGGC | 1 cut(s) | 2165 |
| BciT130I | CCWGG | 2 cut(s) | 2604, 3169 |
| BciVI | GTATCC | 2 cut(s) | 1527, 3174 |
| BcoDI | GTCTC | 5 cut(s) | 145, 241, 951, 2428, 3612 |
| BcuI | ACTAGT | 1 cut(s) | 206 |
| BfaI | CTAG | 9 cut(s) | 207, 266, 1050, 1584, 1845, 2124, 2504, 3426, 3735 |
| BfrI | CTTAAG | 1 cut(s) | 2728 |
| BfuAI | ACCTGC | 1 cut(s) | 319 |
| BfuI | GTATCC | 2 cut(s) | 1527, 3174 |
| BisI | GCNGC | 1 cut(s) | 2144 |
| BlsI | GCNGC | 1 cut(s) | 2145 |
| Bme1390I | CCNGG | 2 cut(s) | 2604, 3169 |
| Bme18I | GGWCC | 1 cut(s) | 1324 |
| BmeT110I | CYCGRG | 2 cut(s) | 1837, 2705 |
| BmgT120I | GGNCC | 3 cut(s) | 1324, 1343, 2981 |
| BmiI | GGNNCC | 6 cut(s) | 225, 792, 1325, 2601, 2608, 2746 |
| BmrFI | CCNGG | 2 cut(s) | 2604, 3169 |
| BmrI | ACTGGG | 1 cut(s) | 3631 |
| BmsI | GCATC | 4 cut(s) | 295, 2419, 2487, 2723 |
| BmuI | ACTGGG | 1 cut(s) | 3631 |
| BpiI | GAAGAC | 1 cut(s) | 3094 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3316, 3348 |
| BpmI | CTGGAG | 1 cut(s) | 2353 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1432, 2629, 3079 |
| BpuEI | CTTGAG | 2 cut(s) | 982, 2412 |
| Bsa29I | ATCGAT | 1 cut(s) | 3209 |
| BsaBI | GATNNNNATC | 1 cut(s) | 174 |
| BsaI | GGTCTC | 1 cut(s) | 145 |
| BsaJI | CCNNGG | 5 cut(s) | 1520, 2751, 2762, 3006, 3167 |
| BsaWI | WCCGGW | 1 cut(s) | 1670 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 638 |
| Bse1I | ACTGG | 4 cut(s) | 110, 2370, 3312, 3626 |
| Bse21I | CCTNAGG | 4 cut(s) | 1450, 1694, 1787, 3405 |
| Bse8I | GATNNNNATC | 1 cut(s) | 174 |
| BseBI | CCWGG | 2 cut(s) | 2604, 3169 |
| BseCI | ATCGAT | 1 cut(s) | 3209 |
| BseDI | CCNNGG | 5 cut(s) | 1520, 2751, 2762, 3006, 3167 |
| BseGI | GGATG | 8 cut(s) | 531, 1989, 1993, 2700, 2857, 3308, 3599, 3603 |
| BseJI | GATNNNNATC | 1 cut(s) | 174 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 638 |
| BseMII | CTCAG | 5 cut(s) | 944, 1634, 1778, 3251, 3396 |
| BseNI | ACTGG | 4 cut(s) | 110, 2370, 3312, 3626 |
| BseSI | GKGCMC | 2 cut(s) | 109, 1245 |
| Bsh1236I | CGCG | 1 cut(s) | 1531 |
| Bsh1285I | CGRYCG | 1 cut(s) | 67 |
| BshFI | GGCC | 2 cut(s) | 1344, 2982 |
| BshNI | GGYRCC | 2 cut(s) | 790, 2606 |
| BshVI | ATCGAT | 1 cut(s) | 3209 |
| BsiEI | CGRYCG | 1 cut(s) | 67 |
| BsiHKAI | GWGCWC | 1 cut(s) | 109 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1837, 2705 |
| BsiSI | CCGG | 1 cut(s) | 1671 |
| BslFI | GGGAC | 3 cut(s) | 720, 1855, 2851 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 638 |
| BsmAI | GTCTC | 5 cut(s) | 145, 241, 951, 2428, 3612 |
| BsmFI | GGGAC | 3 cut(s) | 720, 1855, 2851 |
| BsmI | GAATGC | 2 cut(s) | 2399, 3030 |
| BsnI | GGCC | 2 cut(s) | 1344, 2982 |
| Bso31I | GGTCTC | 1 cut(s) | 145 |
| BsoBI | CYCGRG | 2 cut(s) | 1837, 2705 |
| Bsp1286I | GDGCHC | 2 cut(s) | 109, 1245 |
| Bsp19I | CCATGG | 2 cut(s) | 2751, 2762 |
| BspACI | CCGC | 1 cut(s) | 2144 |
| BspANI | GGCC | 2 cut(s) | 1344, 2982 |
| BspCNI | CTCAG | 5 cut(s) | 945, 1633, 1779, 3252, 3397 |
| BspDI | ATCGAT | 1 cut(s) | 3209 |
| BspFNI | CGCG | 1 cut(s) | 1531 |
| BspHI | TCATGA | 1 cut(s) | 3201 |
| BspLI | GGNNCC | 6 cut(s) | 225, 792, 1325, 2601, 2608, 2746 |
| BspMI | ACCTGC | 1 cut(s) | 319 |
| BspPI | GGATC | 7 cut(s) | 218, 231, 1034, 1926, 2501, 2739, 2752 |
| BspT107I | GGYRCC | 2 cut(s) | 790, 2606 |
| BspTI | CTTAAG | 1 cut(s) | 2728 |
| BspTNI | GGTCTC | 1 cut(s) | 145 |
| BsrI | ACTGG | 4 cut(s) | 110, 2370, 3312, 3626 |
| BssECI | CCNNGG | 5 cut(s) | 1520, 2751, 2762, 3006, 3167 |
| BssT1I | CCWWGG | 4 cut(s) | 1520, 2751, 2762, 3006 |
| Bst2UI | CCWGG | 2 cut(s) | 2604, 3169 |
| Bst4CI | ACNGT | 1 cut(s) | 2599 |
| Bst6I | CTCTTC | 2 cut(s) | 282, 2579 |
| BstAFI | CTTAAG | 1 cut(s) | 2728 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3570 |
| BstDSI | CCRYGG | 2 cut(s) | 2751, 2762 |
| BstEII | GGTNACC | 1 cut(s) | 115 |
| BstF5I | GGATG | 8 cut(s) | 531, 1989, 1993, 2700, 2857, 3308, 3599, 3603 |
| BstFNI | CGCG | 1 cut(s) | 1531 |
| BstMAI | GTCTC | 5 cut(s) | 145, 241, 951, 2428, 3612 |
| BstMCI | CGRYCG | 1 cut(s) | 67 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1948, 3570 |
| BstNI | CCWGG | 2 cut(s) | 2604, 3169 |
| BstPI | GGTNACC | 1 cut(s) | 115 |
| BstSCI | CCNGG | 2 cut(s) | 2602, 3167 |
| BstSLI | GKGCMC | 2 cut(s) | 109, 1245 |
| BstUI | CGCG | 1 cut(s) | 1531 |
| BstV2I | GAAGAC | 1 cut(s) | 3094 |
| BstX2I | RGATCY | 5 cut(s) | 223, 1039, 1931, 2506, 2744 |
| BstYI | RGATCY | 5 cut(s) | 223, 1039, 1931, 2506, 2744 |
| Bsu15I | ATCGAT | 1 cut(s) | 3209 |
| Bsu36I | CCTNAGG | 4 cut(s) | 1450, 1694, 1787, 3405 |
| BsuI | GTATCC | 2 cut(s) | 1527, 3174 |
| BsuRI | GGCC | 2 cut(s) | 1344, 2982 |
| BsuTUI | ATCGAT | 1 cut(s) | 3209 |
| BtgI | CCRYGG | 2 cut(s) | 2751, 2762 |
| BtgZI | GCGATG | 1 cut(s) | 44 |
| BtsCI | GGATG | 8 cut(s) | 531, 1989, 1993, 2700, 2857, 3308, 3599, 3603 |
| BtsIMutI | CAGTG | 2 cut(s) | 117, 3319 |
| BveI | ACCTGC | 1 cut(s) | 319 |
| CciI | TCATGA | 1 cut(s) | 3201 |
| Cfr13I | GGNCC | 3 cut(s) | 1324, 1343, 2981 |
| ClaI | ATCGAT | 1 cut(s) | 3209 |
| CseI | GACGC | 1 cut(s) | 2273 |
| Csp6I | GTAC | 3 cut(s) | 791, 1216, 1503 |
| CviQI | GTAC | 3 cut(s) | 791, 1216, 1503 |
| DraI | TTTAAA | 4 cut(s) | 729, 1714, 3142, 3549 |
| Eam1104I | CTCTTC | 2 cut(s) | 282, 2579 |
| EarI | CTCTTC | 2 cut(s) | 282, 2579 |
| Eco130I | CCWWGG | 4 cut(s) | 1520, 2751, 2762, 3006 |
| Eco31I | GGTCTC | 1 cut(s) | 145 |
| Eco32I | GATATC | 1 cut(s) | 503 |
| Eco47I | GGWCC | 1 cut(s) | 1324 |
| Eco81I | CCTNAGG | 4 cut(s) | 1450, 1694, 1787, 3405 |
| Eco88I | CYCGRG | 2 cut(s) | 1837, 2705 |
| Eco91I | GGTNACC | 1 cut(s) | 115 |
| EcoO65I | GGTNACC | 1 cut(s) | 115 |
| EcoRI | GAATTC | 3 cut(s) | 869, 1201, 3328 |
| EcoRII | CCWGG | 2 cut(s) | 2602, 3167 |
| EcoRV | GATATC | 1 cut(s) | 503 |
| EcoT14I | CCWWGG | 4 cut(s) | 1520, 2751, 2762, 3006 |
| EcoT22I | ATGCAT | 3 cut(s) | 3032, 3575, 3581 |
| ErhI | CCWWGG | 4 cut(s) | 1520, 2751, 2762, 3006 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2427, 2459 |
| FaqI | GGGAC | 3 cut(s) | 720, 1855, 2851 |
| FauNDI | CATATG | 4 cut(s) | 1511, 1573, 3158, 3575 |
| FblI | GTMKAC | 4 cut(s) | 63, 379, 1588, 3271 |
| Fnu4HI | GCNGC | 1 cut(s) | 2144 |
| FokI | GGATG | 8 cut(s) | 538, 1996, 2000, 2687, 2864, 3295, 3606, 3610 |
| Fsp4HI | GCNGC | 1 cut(s) | 2144 |
| FspBI | CTAG | 9 cut(s) | 207, 266, 1050, 1584, 1845, 2124, 2504, 3426, 3735 |
| GluI | GCNGC | 1 cut(s) | 2144 |
| GsuI | CTGGAG | 1 cut(s) | 2353 |
| HaeIII | GGCC | 2 cut(s) | 1344, 2982 |
| HapII | CCGG | 1 cut(s) | 1671 |
| HgaI | GACGC | 1 cut(s) | 2273 |
| HincII | GTYRAC | 3 cut(s) | 64, 380, 2775 |
| HindII | GTYRAC | 3 cut(s) | 64, 380, 2775 |
| HindIII | AAGCTT | 1 cut(s) | 97 |
| HpaI | GTTAAC | 1 cut(s) | 2775 |
| HpaII | CCGG | 1 cut(s) | 1671 |
| HphI | GGTGA | 3 cut(s) | 1685, 2058, 3395 |
| Hpy166II | GTNNAC | 8 cut(s) | 64, 107, 380, 1589, 1597, 2775, 3272, 3280 |
| Hpy188I | TCNGA | 6 cut(s) | 244, 339, 738, 1328, 1641, 3261 |
| Hpy8I | GTNNAC | 8 cut(s) | 64, 107, 380, 1589, 1597, 2775, 3272, 3280 |
| Hpy99I | CGWCG | 2 cut(s) | 65, 302 |
| HpyCH4III | ACNGT | 1 cut(s) | 2599 |
| HpyCH4IV | ACGT | 3 cut(s) | 1218, 1264, 2687 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1948, 3570 |
| HpySE526I | ACGT | 3 cut(s) | 1218, 1264, 2687 |
| KpnI | GGTACC | 1 cut(s) | 794 |
| KspAI | GTTAAC | 1 cut(s) | 2775 |
| LmnI | GCTCC | 6 cut(s) | 9, 368, 478, 515, 1968, 3583 |
| LweI | GCATC | 4 cut(s) | 295, 2419, 2487, 2723 |
| MaeI | CTAG | 9 cut(s) | 207, 266, 1050, 1584, 1845, 2124, 2504, 3426, 3735 |
| MaeII | ACGT | 3 cut(s) | 1218, 1264, 2687 |
| MfeI | CAATTG | 2 cut(s) | 446, 1793 |
| MflI | RGATCY | 5 cut(s) | 223, 1039, 1931, 2506, 2744 |
| MhlI | GDGCHC | 2 cut(s) | 109, 1245 |
| MlyI | GAGTC | 4 cut(s) | 630, 767, 2530, 3743 |
| MmeI | TCCRAC | 6 cut(s) | 822, 1178, 1779, 2817, 3397, 3716 |
| Mph1103I | ATGCAT | 3 cut(s) | 3032, 3575, 3581 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2555 |
| MslI | CAYNNNNRTG | 4 cut(s) | 806, 1918, 3456, 3578 |
| MspCI | CTTAAG | 1 cut(s) | 2728 |
| MspI | CCGG | 1 cut(s) | 1671 |
| MspR9I | CCNGG | 2 cut(s) | 2604, 3169 |
| MunI | CAATTG | 2 cut(s) | 446, 1793 |
| Mva1269I | GAATGC | 2 cut(s) | 2399, 3030 |
| MvaI | CCWGG | 2 cut(s) | 2604, 3169 |
| MvnI | CGCG | 1 cut(s) | 1531 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1948, 3570 |
| NcoI | CCATGG | 2 cut(s) | 2751, 2762 |
| NdeI | CATATG | 4 cut(s) | 1511, 1573, 3158, 3575 |
| NlaIV | GGNNCC | 6 cut(s) | 225, 792, 1325, 2601, 2608, 2746 |
| NmuCI | GTSAC | 4 cut(s) | 2107, 2593, 3188, 3460 |
| NsiI | ATGCAT | 3 cut(s) | 3032, 3575, 3581 |
| PaeR7I | CTCGAG | 1 cut(s) | 2705 |
| PagI | TCATGA | 1 cut(s) | 3201 |
| PaqCI | CACCTGC | 1 cut(s) | 319 |
| PciI | ACATGT | 5 cut(s) | 875, 1591, 2191, 3216, 3274 |
| PctI | GAATGC | 2 cut(s) | 2399, 3030 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2555 |
| PkrI | GCNGC | 1 cut(s) | 2145 |
| PleI | GAGTC | 4 cut(s) | 629, 766, 2530, 3743 |
| PpsI | GAGTC | 4 cut(s) | 629, 766, 2530, 3743 |
| PscI | ACATGT | 5 cut(s) | 875, 1591, 2191, 3216, 3274 |
| PshBI | ATTAAT | 1 cut(s) | 572 |
| PsiI | TTATAA | 1 cut(s) | 1568 |
| Psp6I | CCWGG | 2 cut(s) | 2602, 3167 |
| PspEI | GGTNACC | 1 cut(s) | 115 |
| PspGI | CCWGG | 2 cut(s) | 2602, 3167 |
| PspN4I | GGNNCC | 6 cut(s) | 225, 792, 1325, 2601, 2608, 2746 |
| PspPI | GGNCC | 3 cut(s) | 1324, 1343, 2981 |
| PspXI | VCTCGAGB | 1 cut(s) | 2705 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1508, 1540, 3155, 3187 |
| PsuI | RGATCY | 5 cut(s) | 223, 1039, 1931, 2506, 2744 |
| RsaI | GTAC | 3 cut(s) | 792, 1217, 1504 |
| RsaNI | GTAC | 3 cut(s) | 791, 1216, 1503 |
| RseI | CAYNNNNRTG | 4 cut(s) | 806, 1918, 3456, 3578 |
| SalI | GTCGAC | 2 cut(s) | 62, 378 |
| SatI | GCNGC | 1 cut(s) | 2144 |
| Sau96I | GGNCC | 3 cut(s) | 1324, 1343, 2981 |
| SchI | GAGTC | 4 cut(s) | 630, 767, 2530, 3743 |
| ScrFI | CCNGG | 2 cut(s) | 2604, 3169 |
| SduI | GDGCHC | 2 cut(s) | 109, 1245 |
| SfaNI | GCATC | 4 cut(s) | 295, 2419, 2487, 2723 |
| Sfr274I | CTCGAG | 1 cut(s) | 2705 |
| SinI | GGWCC | 1 cut(s) | 1324 |
| SlaI | CTCGAG | 1 cut(s) | 2705 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 806, 1918, 3456, 3578 |
| SmlI | CTYRAG | 4 cut(s) | 961, 2427, 2705, 2728 |
| SmoI | CTYRAG | 4 cut(s) | 961, 2427, 2705, 2728 |
| SpeI | ACTAGT | 1 cut(s) | 206 |
| SsiI | CCGC | 1 cut(s) | 2144 |
| SspI | AATATT | 3 cut(s) | 2455, 2676, 3656 |
| SspMI | CTAG | 9 cut(s) | 207, 266, 1050, 1584, 1845, 2124, 2504, 3426, 3735 |
| StyD4I | CCNGG | 2 cut(s) | 2602, 3167 |
| StyI | CCWWGG | 4 cut(s) | 1520, 2751, 2762, 3006 |
| TaaI | ACNGT | 1 cut(s) | 2599 |
| TaiI | ACGT | 3 cut(s) | 1221, 1267, 2690 |
| TaqI | TCGA | 6 cut(s) | 63, 300, 354, 379, 2706, 3209 |
| TaqII | GACCGA | 1 cut(s) | 81 |
| TauI | GCSGC | 1 cut(s) | 2146 |
| TscAI | CASTG | 2 cut(s) | 117, 3319 |
| TseFI | GTSAC | 4 cut(s) | 2107, 2593, 3188, 3460 |
| Tsp45I | GTSAC | 4 cut(s) | 2107, 2593, 3188, 3460 |
| TspRI | CASTG | 2 cut(s) | 117, 3319 |
| Vha464I | CTTAAG | 1 cut(s) | 2728 |
| VneI | GTGCAC | 1 cut(s) | 105 |
| VpaK11BI | GGWCC | 1 cut(s) | 1324 |
| VspI | ATTAAT | 1 cut(s) | 572 |
| XapI | RAATTY | 9 cut(s) | 741, 869, 1201, 1644, 2554, 2722, 2998, 3328, 3601 |
| XbaI | TCTAGA | 2 cut(s) | 265, 2123 |
| XhoI | CTCGAG | 1 cut(s) | 2705 |
| XmiI | GTMKAC | 4 cut(s) | 63, 379, 1588, 3271 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2555 |
| XspI | CTAG | 9 cut(s) | 207, 266, 1050, 1584, 1845, 2124, 2504, 3426, 3735 |
| Zsp2I | ATGCAT | 3 cut(s) | 3032, 3575, 3581 |