pycom01g01490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0001044
Physical Location & Seq
Forward (+)
1381717 .. 1383687
1971 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g01490.11

Sequence Viewer

Length: 1380 bp
ATGCAAGTATTTTCATCACATTCATCTTTACAATCTGCCCTTAATTACAATCTGTGCATTTTATTTAATTTCTTAGAAAGTGTCTTAGTTTGTGTTTTTAAGTGTTTTGAATCAATTTATTTCCCAAATTCGTCCAAAGTAGTCAAGGTGCTCAAAACTGCCCAGAAAGTGTTTTTAAGGCAATTTTGTGTGTTTTGGTGCTGTTTTGAGTCTTTTGATTTGTTTTATCAGTTTCCAAGTGATTTAGTAATCCCTCCTAATCCCCGGTTTAGATCGATCCCTACTTATACATATACTACAATTGTCACAAGAGGCAACTTGTTAGTCGAAATAGGAATTGACTCACGATTAGGAAACTTACCATCATGCTTGGGCAACAACTCAAGGGCATGTAATCTAGGTGTGCCGTGGGTTAACCTAGGTGTTACCTCCTCGTTGTTGCGTTCCAAGCCTCTTGTAATGGCTTTTTCAAGCGCATCGTCATTCAAATCGTCAAGATATCCCTGCGCCAAAGAATCAATTATATCAATAGAGAAACATGAATGGTCCTCACTAGGGTACTTAATAGAATCAGAAAGATTGAAATTAATAACTTCCCCATCAAATTCCATGGACAAAGTTCCGTTAAACACGTCAATCTTGGTCCGGGCCGTTTTCATGAATGGCCTTCCAAGGAGGATGGGTAATGAAGTGGCGTTAGATCTATCGGCCAATTGTATGATTACACCATCATTTTTTAACGCTCCTAAATTCATAGATTCTAGCATGGCAGATTCAAAGCGAATATTACCAATGACACAAGGAATTGTAAAACTACCTGGATCTTTGCATTTTGGGGGTAGTTTTCGTTGCAAGATGGCAGAGACATTTTCACTTACCTTGACAACCTCCTTGGTCGAAATCCTCTTCCTAGTGGTGCACAACTCCTTCAAAAACTTGGTCTCTAGAATGTCTTTTTCAGCTTCCTCCATCTTCGTTTGCATGAACCTACTAGGAAAAGGAACATTCGAAGGAAAAACATTAGTAGGAACTGAATTTGACACATTCTTACCTTTATTGGACAGATTGGATGGTTTAGGGTCACTAGAGAGTGGCGGCAAAGGGAGTTCCACCCTTGCCGTGGGTTTGGTTGTTTCCCCCTCTTCAAAAACCTGCCTGATGCGAGATTTATACGCACACAAATTAAACCCTCTTTTTGTCAATTGTAGTATATGTATAAGTAGGGATCGTTCTAGACCGGGGATTAGGAGGGATTACTCAAAGAATGTAAAACTAAACTTTAAAACTCTAAAACAAACCAAAAGACTCAAACAGTACCCAAAGTACTCGAAACTTACTTTGGACGAATTTGGGAAACAAAATGAATCAAAACACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

460

Amino Acids

51.23

Weight (kDa)

9.52

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1160
AciI CCGC 1 cut(s) 1095
AclWI GGATC 3 cut(s) 271, 829, 1233
AcoI YGGCCR 1 cut(s) 708
AcsI RAATTY 5 cut(s) 127, 604, 749, 1034, 1346
AfaI GTAC 3 cut(s) 560, 1316, 1325
AfiI CCNNNNNNNGG 2 cut(s) 555, 1120
AflIII ACRYGT 1 cut(s) 630
AgsI TTSAA 7 cut(s) 110, 471, 487, 583, 777, 931, 1146
AjiI CACGTC 1 cut(s) 633
AjnI CCWGG 1 cut(s) 817
AjuI GAANNNNNNNTTGG 2 cut(s) 1322, 1354
AluBI AGCT 1 cut(s) 962
AluI AGCT 1 cut(s) 962
Alw21I GWGCWC 2 cut(s) 153, 921
Alw26I GTCTC 2 cut(s) 857, 946
Alw44I GTGCAC 1 cut(s) 917
AlwI GGATC 3 cut(s) 271, 829, 1233
AoxI GGCC 3 cut(s) 648, 664, 708
ApaLI GTGCAC 1 cut(s) 917
ApoI RAATTY 5 cut(s) 127, 604, 749, 1034, 1346
ArsI GACNNNNNNTTYG 2 cut(s) 924, 956
AseI ATTAAT 1 cut(s) 587
AspA2I CCTAGG 1 cut(s) 418
AspLEI GCGC 2 cut(s) 476, 509
AspS9I GGNCC 3 cut(s) 546, 643, 648
AsuC2I CCSGG 3 cut(s) 265, 647, 1239
AsuII TTCGAA 1 cut(s) 1008
AvaII GGWCC 2 cut(s) 546, 643
AvrII CCTAGG 1 cut(s) 418
BaeGI GKGCMC 1 cut(s) 921
Bbv12I GWGCWC 2 cut(s) 153, 921
BccI CCATC 7 cut(s) 370, 607, 673, 736, 850, 977, 1064
BceAI ACGGC 3 cut(s) 391, 635, 1103
BciT130I CCWGG 1 cut(s) 819
BcnI CCSGG 3 cut(s) 265, 647, 1239
BcoDI GTCTC 2 cut(s) 857, 946
BfaI CTAG 9 cut(s) 398, 419, 554, 762, 911, 945, 992, 1085, 1233
BfuAI ACCTGC 1 cut(s) 1160
BglII AGATCT 1 cut(s) 700
BisI GCNGC 1 cut(s) 1096
BlnI CCTAGG 1 cut(s) 418
BlsI GCNGC 1 cut(s) 1097
BmcAI AGTACT 1 cut(s) 1325
Bme1390I CCNGG 4 cut(s) 265, 647, 819, 1239
Bme18I GGWCC 2 cut(s) 546, 643
BmgBI CACGTC 1 cut(s) 633
BmgT120I GGNCC 3 cut(s) 546, 643, 648
BmrFI CCNGG 4 cut(s) 265, 647, 819, 1239
BmsI GCATC 2 cut(s) 485, 1149
Bpu14I TTCGAA 1 cut(s) 1008
BpuEI CTTGAG 1 cut(s) 367
BpuMI CCSGG 3 cut(s) 265, 647, 1239
Bsa29I ATCGAT 1 cut(s) 275
BsaI GGTCTC 1 cut(s) 946
BsaJI CCNNGG 8 cut(s) 263, 407, 418, 609, 671, 891, 1119, 1238
BsaXI ACNNNNNCTCC 2 cut(s) 667, 697
Bsc4I CCNNNNNNNGG 2 cut(s) 555, 1120
BseBI CCWGG 1 cut(s) 819
BseCI ATCGAT 1 cut(s) 275
BseDI CCNNGG 8 cut(s) 263, 407, 418, 609, 671, 891, 1119, 1238
BseGI GGATG 2 cut(s) 684, 1075
BseLI CCNNNNNNNGG 2 cut(s) 555, 1120
BseRI GAGGAG 1 cut(s) 421
BseSI GKGCMC 1 cut(s) 921
BshFI GGCC 3 cut(s) 650, 666, 710
BshVI ATCGAT 1 cut(s) 275
BsiHKAI GWGCWC 2 cut(s) 153, 921
BsiSI CCGG 3 cut(s) 265, 646, 1238
BslI CCNNNNNNNGG 2 cut(s) 555, 1120
BsmAI GTCTC 2 cut(s) 857, 946
BsnI GGCC 3 cut(s) 650, 666, 710
Bso31I GGTCTC 1 cut(s) 946
Bsp119I TTCGAA 1 cut(s) 1008
Bsp1286I GDGCHC 2 cut(s) 153, 921
Bsp143I GATC 5 cut(s) 272, 276, 700, 821, 1225
Bsp19I CCATGG 1 cut(s) 609
BspACI CCGC 1 cut(s) 1095
BspANI GGCC 3 cut(s) 650, 666, 710
BspDI ATCGAT 1 cut(s) 275
BspHI TCATGA 1 cut(s) 657
BspMI ACCTGC 1 cut(s) 1160
BspPI GGATC 3 cut(s) 271, 829, 1233
BspT104I TTCGAA 1 cut(s) 1008
BspTNI GGTCTC 1 cut(s) 946
BssECI CCNNGG 8 cut(s) 263, 407, 418, 609, 671, 891, 1119, 1238
BssMI GATC 5 cut(s) 272, 276, 700, 821, 1225
BssT1I CCWWGG 4 cut(s) 418, 609, 671, 891
Bst2UI CCWGG 1 cut(s) 819
Bst4CI ACNGT 1 cut(s) 1314
Bst6I CTCTTC 2 cut(s) 911, 1147
BstBI TTCGAA 1 cut(s) 1008
BstDEI CTNAG 2 cut(s) 73, 85
BstDSI CCRYGG 3 cut(s) 407, 609, 1119
BstF5I GGATG 2 cut(s) 684, 1075
BstHHI GCGC 2 cut(s) 476, 509
BstKTI GATC 5 cut(s) 275, 279, 703, 824, 1228
BstMAI GTCTC 2 cut(s) 857, 946
BstMBI GATC 5 cut(s) 272, 276, 700, 821, 1225
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstNI CCWGG 1 cut(s) 819
BstNSI RCATGY 1 cut(s) 393
BstSCI CCNGG 4 cut(s) 263, 645, 817, 1237
BstSLI GKGCMC 1 cut(s) 921
BstX2I RGATCY 2 cut(s) 700, 821
BstYI RGATCY 2 cut(s) 700, 821
Bsu15I ATCGAT 1 cut(s) 275
BsuRI GGCC 3 cut(s) 650, 666, 710
BsuTUI ATCGAT 1 cut(s) 275
BtgI CCRYGG 3 cut(s) 407, 609, 1119
BtrI CACGTC 1 cut(s) 633
BtsCI GGATG 2 cut(s) 684, 1075
BveI ACCTGC 1 cut(s) 1160
CciI TCATGA 1 cut(s) 657
CfoI GCGC 2 cut(s) 476, 509
Cfr13I GGNCC 3 cut(s) 546, 643, 648
ClaI ATCGAT 1 cut(s) 275
Csp6I GTAC 3 cut(s) 559, 1315, 1324
CviAII CATG 7 cut(s) 366, 390, 539, 610, 658, 766, 982
CviJI RGCY 6 cut(s) 451, 464, 650, 666, 710, 962
CviKI_1 RGCY 6 cut(s) 451, 464, 650, 666, 710, 962
CviQI GTAC 3 cut(s) 559, 1315, 1324
DdeI CTNAG 2 cut(s) 73, 85
DpnI GATC 5 cut(s) 274, 278, 702, 823, 1227
DpnII GATC 5 cut(s) 272, 276, 700, 821, 1225
DraI TTTAAA 1 cut(s) 1282
EaeI YGGCCR 1 cut(s) 708
Eam1104I CTCTTC 2 cut(s) 911, 1147
EarI CTCTTC 2 cut(s) 911, 1147
Eco130I CCWWGG 4 cut(s) 418, 609, 671, 891
Eco31I GGTCTC 1 cut(s) 946
Eco32I GATATC 1 cut(s) 500
Eco47I GGWCC 2 cut(s) 546, 643
EcoRII CCWGG 1 cut(s) 817
EcoRV GATATC 1 cut(s) 500
EcoT14I CCWWGG 4 cut(s) 418, 609, 671, 891
ErhI CCWWGG 4 cut(s) 418, 609, 671, 891
FaeI CATG 7 cut(s) 369, 393, 542, 613, 661, 769, 985
FatI CATG 7 cut(s) 365, 389, 538, 609, 657, 765, 981
Fnu4HI GCNGC 1 cut(s) 1096
FokI GGATG 2 cut(s) 691, 1082
Fsp4HI GCNGC 1 cut(s) 1096
FspBI CTAG 9 cut(s) 398, 419, 554, 762, 911, 945, 992, 1085, 1233
GlaI GCGC 2 cut(s) 475, 508
GluI GCNGC 1 cut(s) 1096
HaeIII GGCC 3 cut(s) 650, 666, 710
HapII CCGG 3 cut(s) 265, 646, 1238
HhaI GCGC 2 cut(s) 476, 509
Hin1II CATG 7 cut(s) 369, 393, 542, 613, 661, 769, 985
Hin6I GCGC 2 cut(s) 474, 507
HinP1I GCGC 2 cut(s) 474, 507
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 9 cut(s) 110, 209, 341, 515, 569, 758, 773, 1305, 1364
HpaI GTTAAC 1 cut(s) 415
HpaII CCGG 3 cut(s) 265, 646, 1238
Hpy166II GTNNAC 2 cut(s) 415, 919
Hpy188I TCNGA 1 cut(s) 574
Hpy188III TCNNGA 5 cut(s) 345, 495, 658, 945, 1233
Hpy8I GTNNAC 2 cut(s) 415, 919
HpyAV CCTTC 3 cut(s) 677, 937, 1004
HpyCH4III ACNGT 1 cut(s) 1314
HpyCH4IV ACGT 1 cut(s) 632
HpyCH4V TGCA 6 cut(s) 4, 57, 829, 852, 919, 981
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
HpyF3I CTNAG 2 cut(s) 73, 85
HpySE526I ACGT 1 cut(s) 632
Hsp92II CATG 7 cut(s) 369, 393, 542, 613, 661, 769, 985
HspAI GCGC 2 cut(s) 474, 507
KspAI GTTAAC 1 cut(s) 415
Kzo9I GATC 5 cut(s) 272, 276, 700, 821, 1225
LmnI GCTCC 1 cut(s) 748
LpnPI CCDG 9 cut(s) 176, 278, 517, 659, 804, 831, 1165, 1169, 1251
LweI GCATC 2 cut(s) 485, 1149
MaeI CTAG 9 cut(s) 398, 419, 554, 762, 911, 945, 992, 1085, 1233
MaeII ACGT 1 cut(s) 632
MaeIII GTNAC 3 cut(s) 304, 424, 1080
MalI GATC 5 cut(s) 274, 278, 702, 823, 1227
MboI GATC 5 cut(s) 272, 276, 700, 821, 1225
MboII GAAGA 3 cut(s) 898, 964, 1134
MfeI CAATTG 3 cut(s) 300, 712, 1201
MflI RGATCY 2 cut(s) 700, 821
MhlI GDGCHC 2 cut(s) 153, 921
MlyI GAGTC 3 cut(s) 218, 335, 1299
MspI CCGG 3 cut(s) 265, 646, 1238
MspR9I CCNGG 4 cut(s) 265, 647, 819, 1239
MunI CAATTG 3 cut(s) 300, 712, 1201
MvaI CCWGG 1 cut(s) 819
MwoI GCNNNNNNNGC 1 cut(s) 448
NciI CCSGG 3 cut(s) 265, 647, 1239
NcoI CCATGG 1 cut(s) 609
NdeII GATC 5 cut(s) 272, 276, 700, 821, 1225
NlaIII CATG 7 cut(s) 369, 393, 542, 613, 661, 769, 985
NmuCI GTSAC 2 cut(s) 304, 1080
NspI RCATGY 1 cut(s) 393
NspV TTCGAA 1 cut(s) 1008
PagI TCATGA 1 cut(s) 657
PfeI GAWTC 6 cut(s) 110, 515, 569, 758, 773, 1364
PkrI GCNGC 1 cut(s) 1097
PleI GAGTC 3 cut(s) 217, 335, 1299
PpsI GAGTC 3 cut(s) 217, 335, 1299
PshBI ATTAAT 1 cut(s) 587
Psp6I CCWGG 1 cut(s) 817
PspGI CCWGG 1 cut(s) 817
PspPI GGNCC 3 cut(s) 546, 643, 648
PsrI GAACNNNNNNTAC 2 cut(s) 1213, 1245
PsuI RGATCY 2 cut(s) 700, 821
RsaI GTAC 3 cut(s) 560, 1316, 1325
RsaNI GTAC 3 cut(s) 559, 1315, 1324
SatI GCNGC 1 cut(s) 1096
Sau3AI GATC 5 cut(s) 272, 276, 700, 821, 1225
Sau96I GGNCC 3 cut(s) 546, 643, 648
ScaI AGTACT 1 cut(s) 1325
SchI GAGTC 3 cut(s) 218, 335, 1299
ScrFI CCNGG 4 cut(s) 265, 647, 819, 1239
SduI GDGCHC 2 cut(s) 153, 921
SfaNI GCATC 2 cut(s) 485, 1149
SfuI TTCGAA 1 cut(s) 1008
SinI GGWCC 2 cut(s) 546, 643
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
SsiI CCGC 1 cut(s) 1095
SspI AATATT 1 cut(s) 786
SspMI CTAG 9 cut(s) 398, 419, 554, 762, 911, 945, 992, 1085, 1233
StyD4I CCNGG 4 cut(s) 263, 645, 817, 1237
StyI CCWWGG 4 cut(s) 418, 609, 671, 891
TaaI ACNGT 1 cut(s) 1314
TaiI ACGT 1 cut(s) 635
TaqI TCGA 5 cut(s) 275, 327, 897, 1008, 1328
TatI WGTACW 1 cut(s) 1323
TauI GCSGC 1 cut(s) 1098
TfiI GAWTC 6 cut(s) 110, 515, 569, 758, 773, 1364
TseFI GTSAC 2 cut(s) 304, 1080
Tsp45I GTSAC 2 cut(s) 304, 1080
TspDTI ATGAA 8 cut(s) 12, 555, 646, 674, 702, 742, 998, 1377
TspGWI ACGGA 1 cut(s) 612
VneI GTGCAC 1 cut(s) 917
VpaK11BI GGWCC 2 cut(s) 546, 643
VspI ATTAAT 1 cut(s) 587
XapI RAATTY 5 cut(s) 127, 604, 749, 1034, 1346
XbaI TCTAGA 2 cut(s) 944, 1232
XceI RCATGY 1 cut(s) 393
XcmI CCANNNNNNNNNTGG 1 cut(s) 1117
XmaJI CCTAGG 1 cut(s) 418
XspI CTAG 9 cut(s) 398, 419, 554, 762, 911, 945, 992, 1085, 1233
ZrmI AGTACT 1 cut(s) 1325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.